data_7VYG
#
_model_server_result.job_id            ZIkQ9bGdwRzsAHoCqfv0lg 
_model_server_result.datetime_utc      '2024-12-21 16:44:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vyg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CB","auth_seq_id":401}' 
#
_entry.id    7VYG 
#
_exptl.entry_id    7VYG 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          31 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VYG 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VYG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 31 FA N N 
? 31 GA N N 
? 31 JA N N 
? 31 TA N N 
? 31 UA N N 
? 31 XA N N 
? 31 YA N N 
? 31 BB N N 
? 31 CB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VYG 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE Q 1 101 718 PEE PEE . 
EA 30 PEE U 1 401 401 PEE PEE . 
FA 31 CDL V 1 201 201 CDL CDL . 
GA 31 CDL V 1 202 203 CDL CDL . 
HA 30 PEE W 1 201 202 PEE PEE . 
IA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
JA 31 CDL a 1 201 201 CDL CDL . 
KA 33 PLX a 1 202 101 PLX PLX . 
LA 33 PLX e 1 201 201 PLX PLX . 
MA 30 PEE f 1 101 101 PEE PEE . 
NA 33 PLX g 1 201 705 PLX PLX . 
OA 30 PEE j 1 201 101 PEE PEE . 
PA 30 PEE j 1 202 201 PEE PEE . 
QA 33 PLX j 1 203 202 PLX PLX . 
RA 33 PLX j 1 204 203 PLX PLX . 
SA 30 PEE l 1 701 207 PEE PEE . 
TA 31 CDL l 1 702 712 CDL CDL . 
UA 31 CDL l 1 703 713 CDL CDL . 
VA 30 PEE l 1 704 719 PEE PEE . 
WA 30 PEE l 1 705 720 PEE PEE . 
XA 31 CDL m 1 201 101 CDL CDL . 
YA 31 CDL n 1 101 102 CDL CDL . 
ZA 30 PEE r 1 501 202 PEE PEE . 
AB 33 PLX r 1 502 205 PLX PLX . 
BB 31 CDL r 1 503 714 CDL CDL . 
CB 31 CDL s 1 401 201 CDL CDL . 
DB 34 UQ s 1 402 402 UQ UQ . 
EB 30 PEE v 1 201 101 PEE PEE . 
FB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . CB 31 128.907 154.406 142.499 1 33.7 ? C1 CDL 401 s 1 
HETATM 2 O O1 CDL . . . CB 31 128.816 155.463 141.592 1 33.7 ? O1 CDL 401 s 1 
HETATM 3 C CA2 CDL . . . CB 31 127.51 153.743 142.592 1 33.7 ? CA2 CDL 401 s 1 
HETATM 4 O OA2 CDL . . . CB 31 126.544 154.674 142.127 1 33.7 ? OA2 CDL 401 s 1 
HETATM 5 P PA1 CDL . . . CB 31 124.951 154.361 142.451 1 33.7 ? PA1 CDL 401 s 1 
HETATM 6 O OA3 CDL . . . CB 31 124.821 152.929 142.889 1 33.7 ? OA3 CDL 401 s 1 
HETATM 7 O OA4 CDL . . . CB 31 124.453 155.261 143.541 1 33.7 ? OA4 CDL 401 s 1 
HETATM 8 O OA5 CDL . . . CB 31 124.06 154.592 141.072 1 33.7 ? OA5 CDL 401 s 1 
HETATM 9 C CA3 CDL . . . CB 31 124.6 154.105 139.855 1 33.7 ? CA3 CDL 401 s 1 
HETATM 10 C CA4 CDL . . . CB 31 123.525 153.312 139.131 1 33.7 ? CA4 CDL 401 s 1 
HETATM 11 O OA6 CDL . . . CB 31 123.462 152.012 139.649 1 33.7 ? OA6 CDL 401 s 1 
HETATM 12 C CA5 CDL . . . CB 31 122.16 151.441 139.612 1 33.7 ? CA5 CDL 401 s 1 
HETATM 13 O OA7 CDL . . . CB 31 121.206 152.123 139.823 1 33.7 ? OA7 CDL 401 s 1 
HETATM 14 C C11 CDL . . . CB 31 121.977 149.926 139.282 1 33.7 ? C11 CDL 401 s 1 
HETATM 15 C C12 CDL . . . CB 31 123.26 149.29 138.734 1 33.7 ? C12 CDL 401 s 1 
HETATM 16 C C13 CDL . . . CB 31 123.407 149.472 137.227 1 33.7 ? C13 CDL 401 s 1 
HETATM 17 C C14 CDL . . . CB 31 124.035 148.241 136.547 1 33.7 ? C14 CDL 401 s 1 
HETATM 18 C C15 CDL . . . CB 31 123.278 147.844 135.248 1 33.7 ? C15 CDL 401 s 1 
HETATM 19 C C16 CDL . . . CB 31 124.155 147.017 134.275 1 33.7 ? C16 CDL 401 s 1 
HETATM 20 C C17 CDL . . . CB 31 125.617 147.547 134.211 1 33.7 ? C17 CDL 401 s 1 
HETATM 21 C C18 CDL . . . CB 31 125.771 148.736 133.23 1 33.7 ? C18 CDL 401 s 1 
HETATM 22 C C19 CDL . . . CB 31 125.727 148.289 131.742 1 33.7 ? C19 CDL 401 s 1 
HETATM 23 C C20 CDL . . . CB 31 127.116 147.85 131.219 1 33.7 ? C20 CDL 401 s 1 
HETATM 24 C C21 CDL . . . CB 31 126.999 146.832 130.055 1 33.7 ? C21 CDL 401 s 1 
HETATM 25 C C22 CDL . . . CB 31 126.074 145.643 130.438 1 33.7 ? C22 CDL 401 s 1 
HETATM 26 C C23 CDL . . . CB 31 126.02 144.54 129.356 1 33.7 ? C23 CDL 401 s 1 
HETATM 27 C CA6 CDL . . . CB 31 123.882 153.235 137.636 1 33.7 ? CA6 CDL 401 s 1 
HETATM 28 O OA8 CDL . . . CB 31 124.966 152.339 137.498 1 33.7 ? OA8 CDL 401 s 1 
HETATM 29 C CA7 CDL . . . CB 31 125.999 152.81 136.631 1 33.7 ? CA7 CDL 401 s 1 
HETATM 30 O OA9 CDL . . . CB 31 126.92 153.396 137.082 1 33.7 ? OA9 CDL 401 s 1 
HETATM 31 C C31 CDL . . . CB 31 125.921 152.552 135.115 1 33.7 ? C31 CDL 401 s 1 
HETATM 32 C C32 CDL . . . CB 31 127.286 152.71 134.452 1 33.7 ? C32 CDL 401 s 1 
HETATM 33 C C33 CDL . . . CB 31 127.4 151.971 133.112 1 33.7 ? C33 CDL 401 s 1 
HETATM 34 C C34 CDL . . . CB 31 126.276 152.372 132.13 1 33.7 ? C34 CDL 401 s 1 
HETATM 35 C C35 CDL . . . CB 31 126.591 153.695 131.384 1 33.7 ? C35 CDL 401 s 1 
HETATM 36 C C36 CDL . . . CB 31 127.366 153.47 130.065 1 33.7 ? C36 CDL 401 s 1 
HETATM 37 C C37 CDL . . . CB 31 126.98 152.155 129.367 1 33.7 ? C37 CDL 401 s 1 
HETATM 38 C C38 CDL . . . CB 31 128.1 151.633 128.458 1 33.7 ? C38 CDL 401 s 1 
HETATM 39 C C39 CDL . . . CB 31 127.816 151.901 126.967 1 33.7 ? C39 CDL 401 s 1 
HETATM 40 C C40 CDL . . . CB 31 128.239 153.321 126.527 1 33.7 ? C40 CDL 401 s 1 
HETATM 41 C C41 CDL . . . CB 31 129.791 153.461 126.349 1 33.7 ? C41 CDL 401 s 1 
HETATM 42 C C42 CDL . . . CB 31 130.204 154.911 125.982 1 33.7 ? C42 CDL 401 s 1 
HETATM 43 C C43 CDL . . . CB 31 129.394 155.465 124.775 1 33.7 ? C43 CDL 401 s 1 
HETATM 44 C CB2 CDL . . . CB 31 129.996 153.417 141.961 1 33.7 ? CB2 CDL 401 s 1 
HETATM 45 O OB2 CDL . . . CB 31 129.348 152.437 141.162 1 33.7 ? OB2 CDL 401 s 1 
HETATM 46 P PB2 CDL . . . CB 31 130.3 151.434 140.216 1 33.7 ? PB2 CDL 401 s 1 
HETATM 47 O OB3 CDL . . . CB 31 131.644 151.247 140.889 1 33.7 ? OB3 CDL 401 s 1 
HETATM 48 O OB4 CDL . . . CB 31 129.625 150.096 140.056 1 33.7 ? OB4 CDL 401 s 1 
HETATM 49 O OB5 CDL . . . CB 31 130.522 152.118 138.704 1 33.7 ? OB5 CDL 401 s 1 
HETATM 50 C CB3 CDL . . . CB 31 131.419 151.467 137.815 1 33.7 ? CB3 CDL 401 s 1 
HETATM 51 C CB4 CDL . . . CB 31 130.789 151.45 136.418 1 33.7 ? CB4 CDL 401 s 1 
HETATM 52 O OB6 CDL . . . CB 31 131.675 150.836 135.511 1 33.7 ? OB6 CDL 401 s 1 
HETATM 53 C CB5 CDL . . . CB 31 131.048 149.978 134.561 1 33.7 ? CB5 CDL 401 s 1 
HETATM 54 O OB7 CDL . . . CB 31 129.866 149.896 134.522 1 33.7 ? OB7 CDL 401 s 1 
HETATM 55 C C51 CDL . . . CB 31 131.903 149.151 133.579 1 33.7 ? C51 CDL 401 s 1 
HETATM 56 C C52 CDL . . . CB 31 131.052 148.252 132.663 1 33.7 ? C52 CDL 401 s 1 
HETATM 57 C C53 CDL . . . CB 31 131.099 148.716 131.198 1 33.7 ? C53 CDL 401 s 1 
HETATM 58 C C54 CDL . . . CB 31 130.716 147.618 130.179 1 33.7 ? C54 CDL 401 s 1 
HETATM 59 C C55 CDL . . . CB 31 130.574 146.218 130.799 1 33.7 ? C55 CDL 401 s 1 
HETATM 60 C C56 CDL . . . CB 31 130.336 145.119 129.728 1 33.7 ? C56 CDL 401 s 1 
HETATM 61 C C57 CDL . . . CB 31 130.65 143.704 130.256 1 33.7 ? C57 CDL 401 s 1 
HETATM 62 C C58 CDL . . . CB 31 131.765 142.993 129.45 1 33.7 ? C58 CDL 401 s 1 
HETATM 63 C C59 CDL . . . CB 31 131.612 141.453 129.482 1 33.7 ? C59 CDL 401 s 1 
HETATM 64 C C60 CDL . . . CB 31 132.769 140.72 128.778 1 33.7 ? C60 CDL 401 s 1 
HETATM 65 C C61 CDL . . . CB 31 132.81 140.983 127.249 1 33.7 ? C61 CDL 401 s 1 
HETATM 66 C C62 CDL . . . CB 31 132.374 139.744 126.438 1 33.7 ? C62 CDL 401 s 1 
HETATM 67 C C63 CDL . . . CB 31 133.323 139.433 125.271 1 33.7 ? C63 CDL 401 s 1 
HETATM 68 C C64 CDL . . . CB 31 133.199 140.436 124.116 1 33.7 ? C64 CDL 401 s 1 
HETATM 69 C CB6 CDL . . . CB 31 130.517 152.886 135.994 1 33.7 ? CB6 CDL 401 s 1 
HETATM 70 O OB8 CDL . . . CB 31 131.052 153.077 134.691 1 33.7 ? OB8 CDL 401 s 1 
HETATM 71 C CB7 CDL . . . CB 31 131.352 154.427 134.401 1 33.7 ? CB7 CDL 401 s 1 
HETATM 72 O OB9 CDL . . . CB 31 131.946 155.078 135.192 1 33.7 ? OB9 CDL 401 s 1 
HETATM 73 C C71 CDL . . . CB 31 130.91 155.047 133.056 1 33.7 ? C71 CDL 401 s 1 
HETATM 74 C C72 CDL . . . CB 31 130.397 153.981 132.079 1 33.7 ? C72 CDL 401 s 1 
HETATM 75 C C73 CDL . . . CB 31 131.139 154.002 130.733 1 33.7 ? C73 CDL 401 s 1 
HETATM 76 C C74 CDL . . . CB 31 131.463 152.588 130.228 1 33.7 ? C74 CDL 401 s 1 
HETATM 77 C C75 CDL . . . CB 31 132.439 152.603 129.02 1 33.7 ? C75 CDL 401 s 1 
HETATM 78 C C76 CDL . . . CB 31 133.887 152.235 129.434 1 33.7 ? C76 CDL 401 s 1 
HETATM 79 C C77 CDL . . . CB 31 134.599 151.364 128.358 1 33.7 ? C77 CDL 401 s 1 
HETATM 80 C C78 CDL . . . CB 31 134.64 149.882 128.752 1 33.7 ? C78 CDL 401 s 1 
HETATM 81 C C79 CDL . . . CB 31 134.811 148.959 127.529 1 33.7 ? C79 CDL 401 s 1 
HETATM 82 C C80 CDL . . . CB 31 133.819 149.314 126.391 1 33.7 ? C80 CDL 401 s 1 
HETATM 83 C C81 CDL . . . CB 31 132.371 148.971 126.742 1 33.7 ? C81 CDL 401 s 1 
HETATM 84 C C82 CDL . . . CB 31 131.359 149.689 125.802 1 33.7 ? C82 CDL 401 s 1 
HETATM 85 C C83 CDL . . . CB 31 131.776 149.573 124.324 1 33.7 ? C83 CDL 401 s 1 
HETATM 86 C C84 CDL . . . CB 31 130.898 150.418 123.368 1 33.7 ? C84 CDL 401 s 1 
HETATM 87 C C85 CDL . . . CB 31 129.471 150.656 123.894 1 33.7 ? C85 CDL 401 s 1 
HETATM 88 C C86 CDL . . . CB 31 128.793 151.835 123.19 1 33.7 ? C86 CDL 401 s 1 
HETATM 89 C C87 CDL . . . CB 31 128.19 151.441 121.843 1 33.7 ? C87 CDL 401 s 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    63 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           89 
#