data_7VYG # _model_server_result.job_id rcaxISb75pR1mO3Oigdk-Q _model_server_result.datetime_utc '2024-12-21 17:23:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DB","auth_seq_id":402}' # _entry.id 7VYG # _exptl.entry_id 7VYG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 863.343 _entity.id 34 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Coenzyme Q10,(2Z,6E,10Z,14E,18E,22E,26Z)-isomer' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 34 _struct_asym.id DB _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id UQ _chem_comp.mon_nstd_flag . _chem_comp.name 'Coenzyme Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-isomer' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VYG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 30 PEE U 1 401 401 PEE PEE . FA 31 CDL V 1 201 201 CDL CDL . GA 31 CDL V 1 202 203 CDL CDL . HA 30 PEE W 1 201 202 PEE PEE . IA 32 8Q1 X 1 201 201 8Q1 8Q1 . JA 31 CDL a 1 201 201 CDL CDL . KA 33 PLX a 1 202 101 PLX PLX . LA 33 PLX e 1 201 201 PLX PLX . MA 30 PEE f 1 101 101 PEE PEE . NA 33 PLX g 1 201 705 PLX PLX . OA 30 PEE j 1 201 101 PEE PEE . PA 30 PEE j 1 202 201 PEE PEE . QA 33 PLX j 1 203 202 PLX PLX . RA 33 PLX j 1 204 203 PLX PLX . SA 30 PEE l 1 701 207 PEE PEE . TA 31 CDL l 1 702 712 CDL CDL . UA 31 CDL l 1 703 713 CDL CDL . VA 30 PEE l 1 704 719 PEE PEE . WA 30 PEE l 1 705 720 PEE PEE . XA 31 CDL m 1 201 101 CDL CDL . YA 31 CDL n 1 101 102 CDL CDL . ZA 30 PEE r 1 501 202 PEE PEE . AB 33 PLX r 1 502 205 PLX PLX . BB 31 CDL r 1 503 714 CDL CDL . CB 31 CDL s 1 401 201 CDL CDL . DB 34 UQ s 1 402 402 UQ UQ . EB 30 PEE v 1 201 101 PEE PEE . FB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ . . . DB 34 123.033 119.955 148.057 1 27.17 ? C1 UQ 402 s 1 HETATM 2 C C2 UQ . . . DB 34 123.55 119.09 149.216 1 27.17 ? C2 UQ 402 s 1 HETATM 3 C C3 UQ . . . DB 34 124.602 119.481 149.91 1 27.17 ? C3 UQ 402 s 1 HETATM 4 C C4 UQ . . . DB 34 125.307 120.799 149.559 1 27.17 ? C4 UQ 402 s 1 HETATM 5 C C5 UQ . . . DB 34 124.791 121.664 148.4 1 27.17 ? C5 UQ 402 s 1 HETATM 6 C C6 UQ . . . DB 34 123.739 121.274 147.704 1 27.17 ? C6 UQ 402 s 1 HETATM 7 C CM5 UQ . . . DB 34 125.507 122.98 148.057 1 27.17 ? CM5 UQ 402 s 1 HETATM 8 C CM3 UQ . . . DB 34 126.023 117.739 150.581 1 27.17 ? CM3 UQ 402 s 1 HETATM 9 C CM2 UQ . . . DB 34 121.795 118.056 150.386 1 27.17 ? CM2 UQ 402 s 1 HETATM 10 C C7 UQ . . . DB 34 123.208 122.127 146.543 1 27.17 ? C7 UQ 402 s 1 HETATM 11 C C8 UQ . . . DB 34 122.046 122.996 147.052 1 27.17 ? C8 UQ 402 s 1 HETATM 12 C C9 UQ . . . DB 34 120.671 122.325 146.877 1 27.17 ? C9 UQ 402 s 1 HETATM 13 C C10 UQ . . . DB 34 119.688 122.71 147.978 1 27.17 ? C10 UQ 402 s 1 HETATM 14 C C11 UQ . . . DB 34 120.086 122.477 145.472 1 27.17 ? C11 UQ 402 s 1 HETATM 15 C C12 UQ . . . DB 34 119.236 123.761 145.394 1 27.17 ? C12 UQ 402 s 1 HETATM 16 C C13 UQ . . . DB 34 118.396 123.763 144.1 1 27.17 ? C13 UQ 402 s 1 HETATM 17 C C14 UQ . . . DB 34 118.465 125.102 143.328 1 27.17 ? C14 UQ 402 s 1 HETATM 18 C C15 UQ . . . DB 34 118.964 126.273 144.155 1 27.17 ? C15 UQ 402 s 1 HETATM 19 C C16 UQ . . . DB 34 117.233 125.41 142.447 1 27.17 ? C16 UQ 402 s 1 HETATM 20 C C17 UQ . . . DB 34 117.679 126.165 141.162 1 27.17 ? C17 UQ 402 s 1 HETATM 21 C C18 UQ . . . DB 34 116.799 125.713 139.963 1 27.17 ? C18 UQ 402 s 1 HETATM 22 C C19 UQ . . . DB 34 116.236 126.889 139.112 1 27.17 ? C19 UQ 402 s 1 HETATM 23 C C20 UQ . . . DB 34 116.886 128.23 139.427 1 27.17 ? C20 UQ 402 s 1 HETATM 24 C C21 UQ . . . DB 34 116.188 126.578 137.594 1 27.17 ? C21 UQ 402 s 1 HETATM 25 C C22 UQ . . . DB 34 115.052 127.382 136.932 1 27.17 ? C22 UQ 402 s 1 HETATM 26 C C23 UQ . . . DB 34 113.697 126.707 137.221 1 27.17 ? C23 UQ 402 s 1 HETATM 27 C C24 UQ . . . DB 34 112.852 126.47 135.953 1 27.17 ? C24 UQ 402 s 1 HETATM 28 C C25 UQ . . . DB 34 111.677 125.53 136.198 1 27.17 ? C25 UQ 402 s 1 HETATM 29 C C26 UQ . . . DB 34 113.701 126.069 134.728 1 27.17 ? C26 UQ 402 s 1 HETATM 30 C C27 UQ . . . DB 34 113.116 126.718 133.459 1 27.17 ? C27 UQ 402 s 1 HETATM 31 C C28 UQ . . . DB 34 113.496 128.207 133.403 1 27.17 ? C28 UQ 402 s 1 HETATM 32 C C29 UQ . . . DB 34 112.377 129.085 132.814 1 27.17 ? C29 UQ 402 s 1 HETATM 33 C C30 UQ . . . DB 34 112.884 130.446 132.33 1 27.17 ? C30 UQ 402 s 1 HETATM 34 C C31 UQ . . . DB 34 111.525 128.355 131.767 1 27.17 ? C31 UQ 402 s 1 HETATM 35 O O2 UQ . . . DB 34 122.902 117.89 149.535 1 27.17 ? O2 UQ 402 s 1 HETATM 36 O O3 UQ . . . DB 34 125.073 118.694 150.967 1 27.17 ? O3 UQ 402 s 1 HETATM 37 O O4 UQ . . . DB 34 126.249 121.148 150.181 1 27.17 ? O4 UQ 402 s 1 HETATM 38 O O1 UQ . . . DB 34 122.089 119.606 147.433 1 27.17 ? O1 UQ 402 s 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 38 #