data_7VYG # _model_server_result.job_id M4EbWTtqynB8c1kSi55k1g _model_server_result.datetime_utc '2024-12-21 17:24:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BB","auth_seq_id":503}' # _entry.id 7VYG # _exptl.entry_id 7VYG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 FA N N ? 31 GA N N ? 31 JA N N ? 31 TA N N ? 31 UA N N ? 31 XA N N ? 31 YA N N ? 31 BB N N ? 31 CB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VYG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 30 PEE U 1 401 401 PEE PEE . FA 31 CDL V 1 201 201 CDL CDL . GA 31 CDL V 1 202 203 CDL CDL . HA 30 PEE W 1 201 202 PEE PEE . IA 32 8Q1 X 1 201 201 8Q1 8Q1 . JA 31 CDL a 1 201 201 CDL CDL . KA 33 PLX a 1 202 101 PLX PLX . LA 33 PLX e 1 201 201 PLX PLX . MA 30 PEE f 1 101 101 PEE PEE . NA 33 PLX g 1 201 705 PLX PLX . OA 30 PEE j 1 201 101 PEE PEE . PA 30 PEE j 1 202 201 PEE PEE . QA 33 PLX j 1 203 202 PLX PLX . RA 33 PLX j 1 204 203 PLX PLX . SA 30 PEE l 1 701 207 PEE PEE . TA 31 CDL l 1 702 712 CDL CDL . UA 31 CDL l 1 703 713 CDL CDL . VA 30 PEE l 1 704 719 PEE PEE . WA 30 PEE l 1 705 720 PEE PEE . XA 31 CDL m 1 201 101 CDL CDL . YA 31 CDL n 1 101 102 CDL CDL . ZA 30 PEE r 1 501 202 PEE PEE . AB 33 PLX r 1 502 205 PLX PLX . BB 31 CDL r 1 503 714 CDL CDL . CB 31 CDL s 1 401 201 CDL CDL . DB 34 UQ s 1 402 402 UQ UQ . EB 30 PEE v 1 201 101 PEE PEE . FB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . BB 31 208.742 151.948 135.709 1 32.53 ? C1 CDL 503 r 1 HETATM 2 O O1 CDL . . . BB 31 207.924 151.797 134.585 1 32.53 ? O1 CDL 503 r 1 HETATM 3 C CA2 CDL . . . BB 31 208.147 153.096 136.562 1 32.53 ? CA2 CDL 503 r 1 HETATM 4 O OA2 CDL . . . BB 31 206.95 153.523 135.931 1 32.53 ? OA2 CDL 503 r 1 HETATM 5 P PA1 CDL . . . BB 31 205.862 154.379 136.838 1 32.53 ? PA1 CDL 503 r 1 HETATM 6 O OA3 CDL . . . BB 31 206.172 154.188 138.302 1 32.53 ? OA3 CDL 503 r 1 HETATM 7 O OA4 CDL . . . BB 31 204.478 153.882 136.55 1 32.53 ? OA4 CDL 503 r 1 HETATM 8 O OA5 CDL . . . BB 31 205.954 155.99 136.456 1 32.53 ? OA5 CDL 503 r 1 HETATM 9 C CA3 CDL . . . BB 31 204.778 156.767 136.6 1 32.53 ? CA3 CDL 503 r 1 HETATM 10 C CA4 CDL . . . BB 31 204.401 157.318 135.234 1 32.53 ? CA4 CDL 503 r 1 HETATM 11 O OA6 CDL . . . BB 31 203.264 158.124 135.352 1 32.53 ? OA6 CDL 503 r 1 HETATM 12 C CA5 CDL . . . BB 31 203.551 159.497 135.569 1 32.53 ? CA5 CDL 503 r 1 HETATM 13 O OA7 CDL . . . BB 31 204.647 159.839 135.884 1 32.53 ? OA7 CDL 503 r 1 HETATM 14 C C11 CDL . . . BB 31 202.43 160.562 135.384 1 32.53 ? C11 CDL 503 r 1 HETATM 15 C C12 CDL . . . BB 31 202.968 161.841 134.74 1 32.53 ? C12 CDL 503 r 1 HETATM 16 C C13 CDL . . . BB 31 201.895 162.576 133.946 1 32.53 ? C13 CDL 503 r 1 HETATM 17 C C14 CDL . . . BB 31 202.399 162.958 132.545 1 32.53 ? C14 CDL 503 r 1 HETATM 18 C C15 CDL . . . BB 31 201.289 162.833 131.466 1 32.53 ? C15 CDL 503 r 1 HETATM 19 C C16 CDL . . . BB 31 201.877 162.531 130.067 1 32.53 ? C16 CDL 503 r 1 HETATM 20 C C17 CDL . . . BB 31 201.682 161.038 129.67 1 32.53 ? C17 CDL 503 r 1 HETATM 21 C C18 CDL . . . BB 31 201.279 160.878 128.184 1 32.53 ? C18 CDL 503 r 1 HETATM 22 C C19 CDL . . . BB 31 202.438 161.234 127.214 1 32.53 ? C19 CDL 503 r 1 HETATM 23 C C20 CDL . . . BB 31 202.523 160.246 126.027 1 32.53 ? C20 CDL 503 r 1 HETATM 24 C C21 CDL . . . BB 31 203.872 160.348 125.265 1 32.53 ? C21 CDL 503 r 1 HETATM 25 C C22 CDL . . . BB 31 204.154 159.081 124.41 1 32.53 ? C22 CDL 503 r 1 HETATM 26 C C23 CDL . . . BB 31 204.747 157.922 125.243 1 32.53 ? C23 CDL 503 r 1 HETATM 27 C C24 CDL . . . BB 31 206.279 158.057 125.433 1 32.53 ? C24 CDL 503 r 1 HETATM 28 C C25 CDL . . . BB 31 206.901 156.812 126.088 1 32.53 ? C25 CDL 503 r 1 HETATM 29 C C26 CDL . . . BB 31 206.335 156.557 127.502 1 32.53 ? C26 CDL 503 r 1 HETATM 30 C CA6 CDL . . . BB 31 204.097 156.159 134.267 1 32.53 ? CA6 CDL 503 r 1 HETATM 31 O OA8 CDL . . . BB 31 203.288 156.672 133.229 1 32.53 ? OA8 CDL 503 r 1 HETATM 32 C CA7 CDL . . . BB 31 203.887 156.585 131.937 1 32.53 ? CA7 CDL 503 r 1 HETATM 33 O OA9 CDL . . . BB 31 204.85 155.922 131.777 1 32.53 ? OA9 CDL 503 r 1 HETATM 34 C C31 CDL . . . BB 31 203.282 157.365 130.755 1 32.53 ? C31 CDL 503 r 1 HETATM 35 C C32 CDL . . . BB 31 203.073 156.489 129.524 1 32.53 ? C32 CDL 503 r 1 HETATM 36 C C33 CDL . . . BB 31 202.753 157.316 128.272 1 32.53 ? C33 CDL 503 r 1 HETATM 37 C C34 CDL . . . BB 31 201.286 157.152 127.814 1 32.53 ? C34 CDL 503 r 1 HETATM 38 C C35 CDL . . . BB 31 201.185 156.336 126.498 1 32.53 ? C35 CDL 503 r 1 HETATM 39 C C36 CDL . . . BB 31 199.809 156.495 125.812 1 32.53 ? C36 CDL 503 r 1 HETATM 40 C C37 CDL . . . BB 31 199.727 155.726 124.484 1 32.53 ? C37 CDL 503 r 1 HETATM 41 C C38 CDL . . . BB 31 200.724 156.249 123.444 1 32.53 ? C38 CDL 503 r 1 HETATM 42 C C39 CDL . . . BB 31 200.123 157.378 122.584 1 32.53 ? C39 CDL 503 r 1 HETATM 43 C C40 CDL . . . BB 31 201.098 158.561 122.402 1 32.53 ? C40 CDL 503 r 1 HETATM 44 C C41 CDL . . . BB 31 200.464 159.734 121.579 1 32.53 ? C41 CDL 503 r 1 HETATM 45 C C42 CDL . . . BB 31 201.521 160.487 120.727 1 32.53 ? C42 CDL 503 r 1 HETATM 46 C C43 CDL . . . BB 31 200.967 161.804 120.11 1 32.53 ? C43 CDL 503 r 1 HETATM 47 C C44 CDL . . . BB 31 201.411 163.07 120.893 1 32.53 ? C44 CDL 503 r 1 HETATM 48 C C45 CDL . . . BB 31 200.526 163.354 122.105 1 32.53 ? C45 CDL 503 r 1 HETATM 49 C C46 CDL . . . BB 31 201.174 162.906 123.429 1 32.53 ? C46 CDL 503 r 1 HETATM 50 C C47 CDL . . . BB 31 200.137 162.554 124.49 1 32.53 ? C47 CDL 503 r 1 HETATM 51 C CB2 CDL . . . BB 31 210.2 152.25 135.219 1 32.53 ? CB2 CDL 503 r 1 HETATM 52 O OB2 CDL . . . BB 31 210.727 151.071 134.622 1 32.53 ? OB2 CDL 503 r 1 HETATM 53 P PB2 CDL . . . BB 31 210.467 150.819 132.984 1 32.53 ? PB2 CDL 503 r 1 HETATM 54 O OB3 CDL . . . BB 31 211.682 151.269 132.195 1 32.53 ? OB3 CDL 503 r 1 HETATM 55 O OB4 CDL . . . BB 31 210.225 149.349 132.739 1 32.53 ? OB4 CDL 503 r 1 HETATM 56 O OB5 CDL . . . BB 31 209.128 151.699 132.491 1 32.53 ? OB5 CDL 503 r 1 HETATM 57 C CB3 CDL . . . BB 31 209.344 152.942 131.837 1 32.53 ? CB3 CDL 503 r 1 HETATM 58 C CB4 CDL . . . BB 31 208.533 152.955 130.536 1 32.53 ? CB4 CDL 503 r 1 HETATM 59 O OB6 CDL . . . BB 31 209.281 153.591 129.526 1 32.53 ? OB6 CDL 503 r 1 HETATM 60 C CB5 CDL . . . BB 31 210.144 152.72 128.801 1 32.53 ? CB5 CDL 503 r 1 HETATM 61 O OB7 CDL . . . BB 31 211.15 152.326 129.291 1 32.53 ? OB7 CDL 503 r 1 HETATM 62 C C51 CDL . . . BB 31 209.766 152.284 127.373 1 32.53 ? C51 CDL 503 r 1 HETATM 63 C C52 CDL . . . BB 31 209.737 153.47 126.397 1 32.53 ? C52 CDL 503 r 1 HETATM 64 C C53 CDL . . . BB 31 209.831 153.014 124.934 1 32.53 ? C53 CDL 503 r 1 HETATM 65 C C54 CDL . . . BB 31 210.815 151.841 124.743 1 32.53 ? C54 CDL 503 r 1 HETATM 66 C C55 CDL . . . BB 31 211.918 152.166 123.726 1 32.53 ? C55 CDL 503 r 1 HETATM 67 C C56 CDL . . . BB 31 212.647 150.891 123.227 1 32.53 ? C56 CDL 503 r 1 HETATM 68 C C57 CDL . . . BB 31 213.284 151.085 121.836 1 32.53 ? C57 CDL 503 r 1 HETATM 69 C C58 CDL . . . BB 31 214.777 150.679 121.817 1 32.53 ? C58 CDL 503 r 1 HETATM 70 C C59 CDL . . . BB 31 215.571 151.41 120.707 1 32.53 ? C59 CDL 503 r 1 HETATM 71 C C60 CDL . . . BB 31 215.209 150.903 119.3 1 32.53 ? C60 CDL 503 r 1 HETATM 72 C C61 CDL . . . BB 31 216.154 151.469 118.206 1 32.53 ? C61 CDL 503 r 1 HETATM 73 C C62 CDL . . . BB 31 215.393 151.853 116.918 1 32.53 ? C62 CDL 503 r 1 HETATM 74 C C63 CDL . . . BB 31 216.332 152.036 115.715 1 32.53 ? C63 CDL 503 r 1 HETATM 75 C C64 CDL . . . BB 31 217.277 150.838 115.523 1 32.53 ? C64 CDL 503 r 1 HETATM 76 C C65 CDL . . . BB 31 218.719 151.268 115.279 1 32.53 ? C65 CDL 503 r 1 HETATM 77 C C66 CDL . . . BB 31 219.694 150.099 115.364 1 32.53 ? C66 CDL 503 r 1 HETATM 78 C C67 CDL . . . BB 31 221.01 150.386 114.643 1 32.53 ? C67 CDL 503 r 1 HETATM 79 C CB6 CDL . . . BB 31 207.226 153.707 130.767 1 32.53 ? CB6 CDL 503 r 1 HETATM 80 O OB8 CDL . . . BB 31 206.619 153.958 129.504 1 32.53 ? OB8 CDL 503 r 1 HETATM 81 C CB7 CDL . . . BB 31 205.362 153.328 129.33 1 32.53 ? CB7 CDL 503 r 1 HETATM 82 O OB9 CDL . . . BB 31 204.455 153.611 130.04 1 32.53 ? OB9 CDL 503 r 1 HETATM 83 C C71 CDL . . . BB 31 205.172 152.27 128.218 1 32.53 ? C71 CDL 503 r 1 HETATM 84 C C72 CDL . . . BB 31 204.475 152.839 126.975 1 32.53 ? C72 CDL 503 r 1 HETATM 85 C C73 CDL . . . BB 31 205.199 152.442 125.678 1 32.53 ? C73 CDL 503 r 1 HETATM 86 C C74 CDL . . . BB 31 204.277 152.494 124.451 1 32.53 ? C74 CDL 503 r 1 HETATM 87 C C75 CDL . . . BB 31 204.097 153.94 123.915 1 32.53 ? C75 CDL 503 r 1 HETATM 88 C C76 CDL . . . BB 31 204.602 154.097 122.459 1 32.53 ? C76 CDL 503 r 1 HETATM 89 C C77 CDL . . . BB 31 203.795 155.175 121.675 1 32.53 ? C77 CDL 503 r 1 HETATM 90 C C78 CDL . . . BB 31 204.586 155.755 120.494 1 32.53 ? C78 CDL 503 r 1 HETATM 91 C C79 CDL . . . BB 31 206.005 156.2 120.904 1 32.53 ? C79 CDL 503 r 1 HETATM 92 C C80 CDL . . . BB 31 205.985 157.512 121.728 1 32.53 ? C80 CDL 503 r 1 HETATM 93 C C81 CDL . . . BB 31 205.611 158.728 120.882 1 32.53 ? C81 CDL 503 r 1 HETATM 94 C C82 CDL . . . BB 31 206.642 158.982 119.744 1 32.53 ? C82 CDL 503 r 1 HETATM 95 C C83 CDL . . . BB 31 206.023 158.857 118.338 1 32.53 ? C83 CDL 503 r 1 HETATM 96 C C84 CDL . . . BB 31 207.087 158.998 117.223 1 32.53 ? C84 CDL 503 r 1 HETATM 97 C C85 CDL . . . BB 31 206.556 159.769 116 1 32.53 ? C85 CDL 503 r 1 HETATM 98 C C86 CDL . . . BB 31 206.062 161.17 116.369 1 32.53 ? C86 CDL 503 r 1 HETATM 99 C C87 CDL . . . BB 31 204.99 161.675 115.405 1 32.53 ? C87 CDL 503 r 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 325 _model_server_stats.query_time_ms 1253 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 99 #