data_7VYG # _model_server_result.job_id lDPzDLoOGg8IN4eD5IOJJQ _model_server_result.datetime_utc '2024-12-21 17:11:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"SA","auth_seq_id":701}' # _entry.id 7VYG # _exptl.entry_id 7VYG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 EA N N ? 30 HA N N ? 30 MA N N ? 30 OA N N ? 30 PA N N ? 30 SA N N ? 30 VA N N ? 30 WA N N ? 30 ZA N N ? 30 EB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 7VYG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 30 PEE U 1 401 401 PEE PEE . FA 31 CDL V 1 201 201 CDL CDL . GA 31 CDL V 1 202 203 CDL CDL . HA 30 PEE W 1 201 202 PEE PEE . IA 32 8Q1 X 1 201 201 8Q1 8Q1 . JA 31 CDL a 1 201 201 CDL CDL . KA 33 PLX a 1 202 101 PLX PLX . LA 33 PLX e 1 201 201 PLX PLX . MA 30 PEE f 1 101 101 PEE PEE . NA 33 PLX g 1 201 705 PLX PLX . OA 30 PEE j 1 201 101 PEE PEE . PA 30 PEE j 1 202 201 PEE PEE . QA 33 PLX j 1 203 202 PLX PLX . RA 33 PLX j 1 204 203 PLX PLX . SA 30 PEE l 1 701 207 PEE PEE . TA 31 CDL l 1 702 712 CDL CDL . UA 31 CDL l 1 703 713 CDL CDL . VA 30 PEE l 1 704 719 PEE PEE . WA 30 PEE l 1 705 720 PEE PEE . XA 31 CDL m 1 201 101 CDL CDL . YA 31 CDL n 1 101 102 CDL CDL . ZA 30 PEE r 1 501 202 PEE PEE . AB 33 PLX r 1 502 205 PLX PLX . BB 31 CDL r 1 503 714 CDL CDL . CB 31 CDL s 1 401 201 CDL CDL . DB 34 UQ s 1 402 402 UQ UQ . EB 30 PEE v 1 201 101 PEE PEE . FB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 PEE . . . SA 30 169.435 176.871 121.11 1 43 ? C21 PEE 701 l 1 HETATM 2 C C20 PEE . . . SA 30 169.684 178.043 122.061 1 43 ? C20 PEE 701 l 1 HETATM 3 C C19 PEE . . . SA 30 171.145 178.122 122.505 1 43 ? C19 PEE 701 l 1 HETATM 4 C C18 PEE . . . SA 30 171.437 179.382 123.322 1 43 ? C18 PEE 701 l 1 HETATM 5 C C17 PEE . . . SA 30 170.592 179.451 124.593 1 43 ? C17 PEE 701 l 1 HETATM 6 C C16 PEE . . . SA 30 170.985 180.63 125.48 1 43 ? C16 PEE 701 l 1 HETATM 7 C C15 PEE . . . SA 30 169.918 180.948 126.528 1 43 ? C15 PEE 701 l 1 HETATM 8 C C14 PEE . . . SA 30 170.47 181.815 127.664 1 43 ? C14 PEE 701 l 1 HETATM 9 C C13 PEE . . . SA 30 170.805 180.988 128.909 1 43 ? C13 PEE 701 l 1 HETATM 10 C C12 PEE . . . SA 30 170.868 181.836 130.188 1 43 ? C12 PEE 701 l 1 HETATM 11 C C11 PEE . . . SA 30 169.972 183.079 130.122 1 43 ? C11 PEE 701 l 1 HETATM 12 C C10 PEE . . . SA 30 169.278 183.372 131.459 1 43 ? C10 PEE 701 l 1 HETATM 13 O O4 PEE . . . SA 30 168.139 183.081 131.599 1 43 ? O4 PEE 701 l 1 HETATM 14 O O2 PEE . . . SA 30 169.988 183.978 132.508 1 43 ? O2 PEE 701 l 1 HETATM 15 C C2 PEE . . . SA 30 169.421 185.178 132.967 1 43 ? C2 PEE 701 l 1 HETATM 16 C C1 PEE . . . SA 30 168.503 184.9 134.158 1 43 ? C1 PEE 701 l 1 HETATM 17 O O3P PEE . . . SA 30 169.206 185.179 135.34 1 43 ? O3P PEE 701 l 1 HETATM 18 P P PEE . . . SA 30 169.108 184.093 136.583 1 43 ? P PEE 701 l 1 HETATM 19 O O2P PEE . . . SA 30 170.494 183.827 137.127 1 43 ? O2P PEE 701 l 1 HETATM 20 O O1P PEE . . . SA 30 168.508 182.805 136.072 1 43 ? O1P PEE 701 l 1 HETATM 21 O O4P PEE . . . SA 30 168.148 184.715 137.779 1 43 ? O4P PEE 701 l 1 HETATM 22 C C4 PEE . . . SA 30 167.467 183.823 138.625 1 43 ? C4 PEE 701 l 1 HETATM 23 C C5 PEE . . . SA 30 167.121 184.55 139.928 1 43 ? C5 PEE 701 l 1 HETATM 24 N N PEE . . . SA 30 165.854 185.249 139.806 1 43 ? N PEE 701 l 1 HETATM 25 C C3 PEE . . . SA 30 170.519 186.149 133.392 1 43 ? C3 PEE 701 l 1 HETATM 26 O O3 PEE . . . SA 30 171.63 185.962 132.563 1 43 ? O3 PEE 701 l 1 HETATM 27 C C30 PEE . . . SA 30 171.99 187.096 131.824 1 43 ? C30 PEE 701 l 1 HETATM 28 O O5 PEE . . . SA 30 172.352 188.076 132.381 1 43 ? O5 PEE 701 l 1 HETATM 29 C C31 PEE . . . SA 30 171.92 187.066 130.296 1 43 ? C31 PEE 701 l 1 HETATM 30 C C32 PEE . . . SA 30 173.13 186.374 129.666 1 43 ? C32 PEE 701 l 1 HETATM 31 C C33 PEE . . . SA 30 173.019 186.304 128.141 1 43 ? C33 PEE 701 l 1 HETATM 32 C C34 PEE . . . SA 30 171.999 185.262 127.676 1 43 ? C34 PEE 701 l 1 HETATM 33 C C35 PEE . . . SA 30 170.862 185.877 126.852 1 43 ? C35 PEE 701 l 1 HETATM 34 C C36 PEE . . . SA 30 170.531 185.039 125.613 1 43 ? C36 PEE 701 l 1 HETATM 35 C C37 PEE . . . SA 30 169.766 185.838 124.559 1 43 ? C37 PEE 701 l 1 HETATM 36 C C38 PEE . . . SA 30 170.383 185.703 123.167 1 43 ? C38 PEE 701 l 1 HETATM 37 C C39 PEE . . . SA 30 169.621 184.727 122.278 1 43 ? C39 PEE 701 l 1 HETATM 38 C C40 PEE . . . SA 30 170.439 184.3 121.065 1 43 ? C40 PEE 701 l 1 HETATM 39 C C41 PEE . . . SA 30 169.579 183.684 119.969 1 43 ? C41 PEE 701 l 1 HETATM 40 C C42 PEE . . . SA 30 170.414 183.156 118.809 1 43 ? C42 PEE 701 l 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #