data_7VYG # _model_server_result.job_id szcuW0c77ksbcTlxOt6_TA _model_server_result.datetime_utc '2024-12-21 17:15:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"TA","auth_seq_id":702}' # _entry.id 7VYG # _exptl.entry_id 7VYG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 FA N N ? 31 GA N N ? 31 JA N N ? 31 TA N N ? 31 UA N N ? 31 XA N N ? 31 YA N N ? 31 BB N N ? 31 CB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VYG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 30 PEE U 1 401 401 PEE PEE . FA 31 CDL V 1 201 201 CDL CDL . GA 31 CDL V 1 202 203 CDL CDL . HA 30 PEE W 1 201 202 PEE PEE . IA 32 8Q1 X 1 201 201 8Q1 8Q1 . JA 31 CDL a 1 201 201 CDL CDL . KA 33 PLX a 1 202 101 PLX PLX . LA 33 PLX e 1 201 201 PLX PLX . MA 30 PEE f 1 101 101 PEE PEE . NA 33 PLX g 1 201 705 PLX PLX . OA 30 PEE j 1 201 101 PEE PEE . PA 30 PEE j 1 202 201 PEE PEE . QA 33 PLX j 1 203 202 PLX PLX . RA 33 PLX j 1 204 203 PLX PLX . SA 30 PEE l 1 701 207 PEE PEE . TA 31 CDL l 1 702 712 CDL CDL . UA 31 CDL l 1 703 713 CDL CDL . VA 30 PEE l 1 704 719 PEE PEE . WA 30 PEE l 1 705 720 PEE PEE . XA 31 CDL m 1 201 101 CDL CDL . YA 31 CDL n 1 101 102 CDL CDL . ZA 30 PEE r 1 501 202 PEE PEE . AB 33 PLX r 1 502 205 PLX PLX . BB 31 CDL r 1 503 714 CDL CDL . CB 31 CDL s 1 401 201 CDL CDL . DB 34 UQ s 1 402 402 UQ UQ . EB 30 PEE v 1 201 101 PEE PEE . FB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . TA 31 230.404 193.195 134.151 1 29.44 ? C1 CDL 702 l 1 HETATM 2 O O1 CDL . . . TA 31 229.57 192.606 133.201 1 29.44 ? O1 CDL 702 l 1 HETATM 3 C CA2 CDL . . . TA 31 230.646 194.659 133.709 1 29.44 ? CA2 CDL 702 l 1 HETATM 4 O OA2 CDL . . . TA 31 230.296 194.759 132.337 1 29.44 ? OA2 CDL 702 l 1 HETATM 5 P PA1 CDL . . . TA 31 230.374 196.242 131.605 1 29.44 ? PA1 CDL 702 l 1 HETATM 6 O OA3 CDL . . . TA 31 231.815 196.624 131.392 1 29.44 ? OA3 CDL 702 l 1 HETATM 7 O OA4 CDL . . . TA 31 229.701 197.262 132.469 1 29.44 ? OA4 CDL 702 l 1 HETATM 8 O OA5 CDL . . . TA 31 229.599 196.165 130.143 1 29.44 ? OA5 CDL 702 l 1 HETATM 9 C CA3 CDL . . . TA 31 230.055 195.204 129.208 1 29.44 ? CA3 CDL 702 l 1 HETATM 10 C CA4 CDL . . . TA 31 229.52 195.586 127.839 1 29.44 ? CA4 CDL 702 l 1 HETATM 11 O OA6 CDL . . . TA 31 228.478 196.508 127.992 1 29.44 ? OA6 CDL 702 l 1 HETATM 12 C CA5 CDL . . . TA 31 228.812 197.822 127.572 1 29.44 ? CA5 CDL 702 l 1 HETATM 13 O OA7 CDL . . . TA 31 229.925 198.221 127.702 1 29.44 ? OA7 CDL 702 l 1 HETATM 14 C C11 CDL . . . TA 31 227.726 198.738 126.93 1 29.44 ? C11 CDL 702 l 1 HETATM 15 C C12 CDL . . . TA 31 227.498 198.395 125.456 1 29.44 ? C12 CDL 702 l 1 HETATM 16 C C13 CDL . . . TA 31 226.89 199.55 124.667 1 29.44 ? C13 CDL 702 l 1 HETATM 17 C C14 CDL . . . TA 31 227.756 199.915 123.448 1 29.44 ? C14 CDL 702 l 1 HETATM 18 C C15 CDL . . . TA 31 226.985 200.78 122.412 1 29.44 ? C15 CDL 702 l 1 HETATM 19 C C16 CDL . . . TA 31 225.858 199.992 121.701 1 29.44 ? C16 CDL 702 l 1 HETATM 20 C C17 CDL . . . TA 31 225.265 200.787 120.5 1 29.44 ? C17 CDL 702 l 1 HETATM 21 C C18 CDL . . . TA 31 226.321 201.072 119.406 1 29.44 ? C18 CDL 702 l 1 HETATM 22 C C19 CDL . . . TA 31 226.819 199.757 118.747 1 29.44 ? C19 CDL 702 l 1 HETATM 23 C C20 CDL . . . TA 31 227.151 199.933 117.248 1 29.44 ? C20 CDL 702 l 1 HETATM 24 C C21 CDL . . . TA 31 227.351 198.567 116.542 1 29.44 ? C21 CDL 702 l 1 HETATM 25 C C22 CDL . . . TA 31 227.888 198.73 115.095 1 29.44 ? C22 CDL 702 l 1 HETATM 26 C C23 CDL . . . TA 31 229.307 199.34 115.08 1 29.44 ? C23 CDL 702 l 1 HETATM 27 C C24 CDL . . . TA 31 229.834 199.564 113.641 1 29.44 ? C24 CDL 702 l 1 HETATM 28 C C25 CDL . . . TA 31 228.981 200.581 112.865 1 29.44 ? C25 CDL 702 l 1 HETATM 29 C C26 CDL . . . TA 31 229.672 201.046 111.565 1 29.44 ? C26 CDL 702 l 1 HETATM 30 C C27 CDL . . . TA 31 231.193 201.164 111.717 1 29.44 ? C27 CDL 702 l 1 HETATM 31 C CA6 CDL . . . TA 31 228.983 194.328 127.133 1 29.44 ? CA6 CDL 702 l 1 HETATM 32 O OA8 CDL . . . TA 31 227.574 194.427 127.078 1 29.44 ? OA8 CDL 702 l 1 HETATM 33 C CA7 CDL . . . TA 31 227.067 194.894 125.826 1 29.44 ? CA7 CDL 702 l 1 HETATM 34 O OA9 CDL . . . TA 31 226.031 195.46 125.787 1 29.44 ? OA9 CDL 702 l 1 HETATM 35 C C31 CDL . . . TA 31 227.861 194.66 124.527 1 29.44 ? C31 CDL 702 l 1 HETATM 36 C C32 CDL . . . TA 31 227.016 193.982 123.453 1 29.44 ? C32 CDL 702 l 1 HETATM 37 C C33 CDL . . . TA 31 226.772 194.905 122.252 1 29.44 ? C33 CDL 702 l 1 HETATM 38 C C34 CDL . . . TA 31 225.541 195.816 122.459 1 29.44 ? C34 CDL 702 l 1 HETATM 39 C C35 CDL . . . TA 31 224.248 194.997 122.709 1 29.44 ? C35 CDL 702 l 1 HETATM 40 C C36 CDL . . . TA 31 223.009 195.643 122.051 1 29.44 ? C36 CDL 702 l 1 HETATM 41 C C37 CDL . . . TA 31 223.345 196.283 120.696 1 29.44 ? C37 CDL 702 l 1 HETATM 42 C C38 CDL . . . TA 31 222.777 195.476 119.524 1 29.44 ? C38 CDL 702 l 1 HETATM 43 C C39 CDL . . . TA 31 223.434 195.849 118.183 1 29.44 ? C39 CDL 702 l 1 HETATM 44 C C40 CDL . . . TA 31 224.029 194.616 117.471 1 29.44 ? C40 CDL 702 l 1 HETATM 45 C C41 CDL . . . TA 31 225.332 194.954 116.669 1 29.44 ? C41 CDL 702 l 1 HETATM 46 C C42 CDL . . . TA 31 225.94 193.686 116.013 1 29.44 ? C42 CDL 702 l 1 HETATM 47 C C43 CDL . . . TA 31 227.378 193.91 115.466 1 29.44 ? C43 CDL 702 l 1 HETATM 48 C C44 CDL . . . TA 31 228.092 192.56 115.194 1 29.44 ? C44 CDL 702 l 1 HETATM 49 C C45 CDL . . . TA 31 228.186 191.714 116.461 1 29.44 ? C45 CDL 702 l 1 HETATM 50 C C46 CDL . . . TA 31 229.145 190.519 116.313 1 29.44 ? C46 CDL 702 l 1 HETATM 51 C C47 CDL . . . TA 31 228.93 189.47 117.4 1 29.44 ? C47 CDL 702 l 1 HETATM 52 C CB2 CDL . . . TA 31 231.721 192.349 134.189 1 29.44 ? CB2 CDL 702 l 1 HETATM 53 O OB2 CDL . . . TA 31 232.649 192.927 133.281 1 29.44 ? OB2 CDL 702 l 1 HETATM 54 P PB2 CDL . . . TA 31 234.176 192.245 133.202 1 29.44 ? PB2 CDL 702 l 1 HETATM 55 O OB3 CDL . . . TA 31 234.086 190.792 133.618 1 29.44 ? OB3 CDL 702 l 1 HETATM 56 O OB4 CDL . . . TA 31 235.1 192.979 134.143 1 29.44 ? OB4 CDL 702 l 1 HETATM 57 O OB5 CDL . . . TA 31 234.765 192.342 131.638 1 29.44 ? OB5 CDL 702 l 1 HETATM 58 C CB3 CDL . . . TA 31 234.817 191.153 130.861 1 29.44 ? CB3 CDL 702 l 1 HETATM 59 C CB4 CDL . . . TA 31 233.774 191.27 129.742 1 29.44 ? CB4 CDL 702 l 1 HETATM 60 O OB6 CDL . . . TA 31 233.769 192.59 129.261 1 29.44 ? OB6 CDL 702 l 1 HETATM 61 C CB5 CDL . . . TA 31 233.729 192.678 127.843 1 29.44 ? CB5 CDL 702 l 1 HETATM 62 O OB7 CDL . . . TA 31 234.176 191.8 127.187 1 29.44 ? OB7 CDL 702 l 1 HETATM 63 C C51 CDL . . . TA 31 233.101 193.909 127.162 1 29.44 ? C51 CDL 702 l 1 HETATM 64 C C52 CDL . . . TA 31 233.123 193.787 125.63 1 29.44 ? C52 CDL 702 l 1 HETATM 65 C C53 CDL . . . TA 31 233.177 195.156 124.939 1 29.44 ? C53 CDL 702 l 1 HETATM 66 C C54 CDL . . . TA 31 231.806 195.864 124.932 1 29.44 ? C54 CDL 702 l 1 HETATM 67 C C55 CDL . . . TA 31 231.174 195.882 123.533 1 29.44 ? C55 CDL 702 l 1 HETATM 68 C C56 CDL . . . TA 31 230.457 197.223 123.236 1 29.44 ? C56 CDL 702 l 1 HETATM 69 C C57 CDL . . . TA 31 230.467 197.567 121.733 1 29.44 ? C57 CDL 702 l 1 HETATM 70 C C58 CDL . . . TA 31 230.098 196.354 120.845 1 29.44 ? C58 CDL 702 l 1 HETATM 71 C C59 CDL . . . TA 31 228.925 196.672 119.886 1 29.44 ? C59 CDL 702 l 1 HETATM 72 C C60 CDL . . . TA 31 228.797 195.638 118.752 1 29.44 ? C60 CDL 702 l 1 HETATM 73 C C61 CDL . . . TA 31 230.181 195.209 118.194 1 29.44 ? C61 CDL 702 l 1 HETATM 74 C C62 CDL . . . TA 31 230.369 195.592 116.71 1 29.44 ? C62 CDL 702 l 1 HETATM 75 C C63 CDL . . . TA 31 231.51 194.804 116.051 1 29.44 ? C63 CDL 702 l 1 HETATM 76 C C64 CDL . . . TA 31 231.675 195.146 114.562 1 29.44 ? C64 CDL 702 l 1 HETATM 77 C C65 CDL . . . TA 31 232.929 195.97 114.289 1 29.44 ? C65 CDL 702 l 1 HETATM 78 C C66 CDL . . . TA 31 232.756 197.441 114.653 1 29.44 ? C66 CDL 702 l 1 HETATM 79 C CB6 CDL . . . TA 31 232.393 190.93 130.288 1 29.44 ? CB6 CDL 702 l 1 HETATM 80 O OB8 CDL . . . TA 31 231.425 191.212 129.281 1 29.44 ? OB8 CDL 702 l 1 HETATM 81 C CB7 CDL . . . TA 31 230.898 190.064 128.639 1 29.44 ? CB7 CDL 702 l 1 HETATM 82 O OB9 CDL . . . TA 31 230.496 189.153 129.28 1 29.44 ? OB9 CDL 702 l 1 HETATM 83 C C71 CDL . . . TA 31 230.835 189.998 127.098 1 29.44 ? C71 CDL 702 l 1 HETATM 84 C C72 CDL . . . TA 31 229.482 190.491 126.569 1 29.44 ? C72 CDL 702 l 1 HETATM 85 C C73 CDL . . . TA 31 228.826 189.502 125.592 1 29.44 ? C73 CDL 702 l 1 HETATM 86 C C74 CDL . . . TA 31 228.634 190.116 124.197 1 29.44 ? C74 CDL 702 l 1 HETATM 87 C C75 CDL . . . TA 31 229.977 190.267 123.434 1 29.44 ? C75 CDL 702 l 1 HETATM 88 C C76 CDL . . . TA 31 230.16 191.683 122.827 1 29.44 ? C76 CDL 702 l 1 HETATM 89 C C77 CDL . . . TA 31 229.704 191.751 121.339 1 29.44 ? C77 CDL 702 l 1 HETATM 90 C C78 CDL . . . TA 31 230.885 191.762 120.358 1 29.44 ? C78 CDL 702 l 1 HETATM 91 C C79 CDL . . . TA 31 231.851 192.944 120.592 1 29.44 ? C79 CDL 702 l 1 HETATM 92 C C80 CDL . . . TA 31 232.905 193.08 119.461 1 29.44 ? C80 CDL 702 l 1 HETATM 93 C C81 CDL . . . TA 31 233.676 194.398 119.536 1 29.44 ? C81 CDL 702 l 1 HETATM 94 C C82 CDL . . . TA 31 234.5 194.683 118.244 1 29.44 ? C82 CDL 702 l 1 HETATM 95 C C83 CDL . . . TA 31 235.086 196.109 118.216 1 29.44 ? C83 CDL 702 l 1 HETATM 96 C C84 CDL . . . TA 31 234.207 197.117 118.995 1 29.44 ? C84 CDL 702 l 1 HETATM 97 C C85 CDL . . . TA 31 233.836 198.354 118.158 1 29.44 ? C85 CDL 702 l 1 HETATM 98 C C86 CDL . . . TA 31 232.765 199.207 118.842 1 29.44 ? C86 CDL 702 l 1 HETATM 99 C C87 CDL . . . TA 31 231.831 199.867 117.83 1 29.44 ? C87 CDL 702 l 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 1324 _model_server_stats.query_time_ms 1213 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 99 #