data_7VYG # _model_server_result.job_id f8hqWMVMuFP0thOHqJAwEQ _model_server_result.datetime_utc '2024-12-21 17:01:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"UA","auth_seq_id":703}' # _entry.id 7VYG # _exptl.entry_id 7VYG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 FA N N ? 31 GA N N ? 31 JA N N ? 31 TA N N ? 31 UA N N ? 31 XA N N ? 31 YA N N ? 31 BB N N ? 31 CB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VYG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 30 PEE U 1 401 401 PEE PEE . FA 31 CDL V 1 201 201 CDL CDL . GA 31 CDL V 1 202 203 CDL CDL . HA 30 PEE W 1 201 202 PEE PEE . IA 32 8Q1 X 1 201 201 8Q1 8Q1 . JA 31 CDL a 1 201 201 CDL CDL . KA 33 PLX a 1 202 101 PLX PLX . LA 33 PLX e 1 201 201 PLX PLX . MA 30 PEE f 1 101 101 PEE PEE . NA 33 PLX g 1 201 705 PLX PLX . OA 30 PEE j 1 201 101 PEE PEE . PA 30 PEE j 1 202 201 PEE PEE . QA 33 PLX j 1 203 202 PLX PLX . RA 33 PLX j 1 204 203 PLX PLX . SA 30 PEE l 1 701 207 PEE PEE . TA 31 CDL l 1 702 712 CDL CDL . UA 31 CDL l 1 703 713 CDL CDL . VA 30 PEE l 1 704 719 PEE PEE . WA 30 PEE l 1 705 720 PEE PEE . XA 31 CDL m 1 201 101 CDL CDL . YA 31 CDL n 1 101 102 CDL CDL . ZA 30 PEE r 1 501 202 PEE PEE . AB 33 PLX r 1 502 205 PLX PLX . BB 31 CDL r 1 503 714 CDL CDL . CB 31 CDL s 1 401 201 CDL CDL . DB 34 UQ s 1 402 402 UQ UQ . EB 30 PEE v 1 201 101 PEE PEE . FB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . UA 31 217.057 238.299 144.869 1 36.93 ? C1 CDL 703 l 1 HETATM 2 O O1 CDL . . . UA 31 217.756 239.479 144.605 1 36.93 ? O1 CDL 703 l 1 HETATM 3 C CA2 CDL . . . UA 31 215.552 238.561 144.604 1 36.93 ? CA2 CDL 703 l 1 HETATM 4 O OA2 CDL . . . UA 31 215.427 239.173 143.327 1 36.93 ? OA2 CDL 703 l 1 HETATM 5 P PA1 CDL . . . UA 31 214.184 240.241 143.08 1 36.93 ? PA1 CDL 703 l 1 HETATM 6 O OA3 CDL . . . UA 31 212.869 239.546 143.316 1 36.93 ? OA3 CDL 703 l 1 HETATM 7 O OA4 CDL . . . UA 31 214.316 241.387 144.038 1 36.93 ? OA4 CDL 703 l 1 HETATM 8 O OA5 CDL . . . UA 31 214.244 240.814 141.523 1 36.93 ? OA5 CDL 703 l 1 HETATM 9 C CA3 CDL . . . UA 31 213.361 241.861 141.153 1 36.93 ? CA3 CDL 703 l 1 HETATM 10 C CA4 CDL . . . UA 31 213.831 242.439 139.826 1 36.93 ? CA4 CDL 703 l 1 HETATM 11 O OA6 CDL . . . UA 31 213.159 241.796 138.777 1 36.93 ? OA6 CDL 703 l 1 HETATM 12 C CA5 CDL . . . UA 31 212.961 242.618 137.634 1 36.93 ? CA5 CDL 703 l 1 HETATM 13 O OA7 CDL . . . UA 31 213.135 243.794 137.708 1 36.93 ? OA7 CDL 703 l 1 HETATM 14 C C11 CDL . . . UA 31 212.526 241.979 136.28 1 36.93 ? C11 CDL 703 l 1 HETATM 15 C C12 CDL . . . UA 31 211.392 242.756 135.604 1 36.93 ? C12 CDL 703 l 1 HETATM 16 C C13 CDL . . . UA 31 211.545 242.78 134.086 1 36.93 ? C13 CDL 703 l 1 HETATM 17 C C14 CDL . . . UA 31 210.677 241.721 133.379 1 36.93 ? C14 CDL 703 l 1 HETATM 18 C C15 CDL . . . UA 31 209.346 241.428 134.132 1 36.93 ? C15 CDL 703 l 1 HETATM 19 C C16 CDL . . . UA 31 208.36 240.589 133.281 1 36.93 ? C16 CDL 703 l 1 HETATM 20 C C17 CDL . . . UA 31 206.874 240.843 133.678 1 36.93 ? C17 CDL 703 l 1 HETATM 21 C C18 CDL . . . UA 31 206.418 239.95 134.861 1 36.93 ? C18 CDL 703 l 1 HETATM 22 C C19 CDL . . . UA 31 204.906 240.111 135.191 1 36.93 ? C19 CDL 703 l 1 HETATM 23 C C20 CDL . . . UA 31 204.06 240.492 133.952 1 36.93 ? C20 CDL 703 l 1 HETATM 24 C C21 CDL . . . UA 31 202.534 240.426 134.229 1 36.93 ? C21 CDL 703 l 1 HETATM 25 C C22 CDL . . . UA 31 202.008 238.963 134.278 1 36.93 ? C22 CDL 703 l 1 HETATM 26 C C23 CDL . . . UA 31 200.526 238.881 134.708 1 36.93 ? C23 CDL 703 l 1 HETATM 27 C C24 CDL . . . UA 31 200.012 237.42 134.782 1 36.93 ? C24 CDL 703 l 1 HETATM 28 C C25 CDL . . . UA 31 199.905 236.768 133.393 1 36.93 ? C25 CDL 703 l 1 HETATM 29 C C26 CDL . . . UA 31 199.605 235.255 133.477 1 36.93 ? C26 CDL 703 l 1 HETATM 30 C C27 CDL . . . UA 31 199.081 234.698 132.149 1 36.93 ? C27 CDL 703 l 1 HETATM 31 C CA6 CDL . . . UA 31 215.348 242.217 139.676 1 36.93 ? CA6 CDL 703 l 1 HETATM 32 O OA8 CDL . . . UA 31 215.844 243.123 138.711 1 36.93 ? OA8 CDL 703 l 1 HETATM 33 C CA7 CDL . . . UA 31 216.703 242.524 137.737 1 36.93 ? CA7 CDL 703 l 1 HETATM 34 O OA9 CDL . . . UA 31 216.912 241.362 137.766 1 36.93 ? OA9 CDL 703 l 1 HETATM 35 C C31 CDL . . . UA 31 217.364 243.393 136.653 1 36.93 ? C31 CDL 703 l 1 HETATM 36 C C32 CDL . . . UA 31 216.35 243.982 135.678 1 36.93 ? C32 CDL 703 l 1 HETATM 37 C C33 CDL . . . UA 31 216.655 243.581 134.23 1 36.93 ? C33 CDL 703 l 1 HETATM 38 C C34 CDL . . . UA 31 217.81 244.414 133.632 1 36.93 ? C34 CDL 703 l 1 HETATM 39 C C35 CDL . . . UA 31 217.337 245.286 132.441 1 36.93 ? C35 CDL 703 l 1 HETATM 40 C C36 CDL . . . UA 31 216.571 246.544 132.91 1 36.93 ? C36 CDL 703 l 1 HETATM 41 C C37 CDL . . . UA 31 216.684 247.708 131.912 1 36.93 ? C37 CDL 703 l 1 HETATM 42 C C38 CDL . . . UA 31 218.031 247.714 131.177 1 36.93 ? C38 CDL 703 l 1 HETATM 43 C C39 CDL . . . UA 31 217.91 248.258 129.742 1 36.93 ? C39 CDL 703 l 1 HETATM 44 C C40 CDL . . . UA 31 219.291 248.544 129.114 1 36.93 ? C40 CDL 703 l 1 HETATM 45 C C41 CDL . . . UA 31 219.18 249.195 127.693 1 36.93 ? C41 CDL 703 l 1 HETATM 46 C C42 CDL . . . UA 31 217.917 248.719 126.924 1 36.93 ? C42 CDL 703 l 1 HETATM 47 C C43 CDL . . . UA 31 218.167 248.595 125.393 1 36.93 ? C43 CDL 703 l 1 HETATM 48 C C44 CDL . . . UA 31 219.082 249.724 124.849 1 36.93 ? C44 CDL 703 l 1 HETATM 49 C C45 CDL . . . UA 31 219.276 249.628 123.338 1 36.93 ? C45 CDL 703 l 1 HETATM 50 C C46 CDL . . . UA 31 220.657 250.14 122.89 1 36.93 ? C46 CDL 703 l 1 HETATM 51 C C47 CDL . . . UA 31 221.649 249.002 122.672 1 36.93 ? C47 CDL 703 l 1 HETATM 52 C CB2 CDL . . . UA 31 217.64 237.178 143.943 1 36.93 ? CB2 CDL 703 l 1 HETATM 53 O OB2 CDL . . . UA 31 218.956 237.549 143.56 1 36.93 ? OB2 CDL 703 l 1 HETATM 54 P PB2 CDL . . . UA 31 219.958 236.38 142.894 1 36.93 ? PB2 CDL 703 l 1 HETATM 55 O OB3 CDL . . . UA 31 221.293 236.389 143.613 1 36.93 ? OB3 CDL 703 l 1 HETATM 56 O OB4 CDL . . . UA 31 219.318 235.023 143.049 1 36.93 ? OB4 CDL 703 l 1 HETATM 57 O OB5 CDL . . . UA 31 220.192 236.706 141.267 1 36.93 ? OB5 CDL 703 l 1 HETATM 58 C CB3 CDL . . . UA 31 219.307 237.612 140.622 1 36.93 ? CB3 CDL 703 l 1 HETATM 59 C CB4 CDL . . . UA 31 219.582 237.553 139.113 1 36.93 ? CB4 CDL 703 l 1 HETATM 60 O OB6 CDL . . . UA 31 220.217 238.736 138.701 1 36.93 ? OB6 CDL 703 l 1 HETATM 61 C CB5 CDL . . . UA 31 220.934 238.62 137.478 1 36.93 ? CB5 CDL 703 l 1 HETATM 62 O OB7 CDL . . . UA 31 221.349 237.568 137.13 1 36.93 ? OB7 CDL 703 l 1 HETATM 63 C C51 CDL . . . UA 31 221.177 239.865 136.604 1 36.93 ? C51 CDL 703 l 1 HETATM 64 C C52 CDL . . . UA 31 219.865 240.523 136.146 1 36.93 ? C52 CDL 703 l 1 HETATM 65 C C53 CDL . . . UA 31 219.762 240.614 134.618 1 36.93 ? C53 CDL 703 l 1 HETATM 66 C C54 CDL . . . UA 31 221.142 240.803 133.959 1 36.93 ? C54 CDL 703 l 1 HETATM 67 C C55 CDL . . . UA 31 221.034 241.075 132.453 1 36.93 ? C55 CDL 703 l 1 HETATM 68 C C56 CDL . . . UA 31 220.773 242.574 132.166 1 36.93 ? C56 CDL 703 l 1 HETATM 69 C C57 CDL . . . UA 31 220.787 242.878 130.657 1 36.93 ? C57 CDL 703 l 1 HETATM 70 C C58 CDL . . . UA 31 219.654 242.125 129.921 1 36.93 ? C58 CDL 703 l 1 HETATM 71 C C59 CDL . . . UA 31 218.388 242.993 129.722 1 36.93 ? C59 CDL 703 l 1 HETATM 72 C C60 CDL . . . UA 31 218.709 244.343 129.057 1 36.93 ? C60 CDL 703 l 1 HETATM 73 C C61 CDL . . . UA 31 219.301 244.169 127.634 1 36.93 ? C61 CDL 703 l 1 HETATM 74 C C62 CDL . . . UA 31 220.476 245.135 127.373 1 36.93 ? C62 CDL 703 l 1 HETATM 75 C C63 CDL . . . UA 31 220.832 245.221 125.882 1 36.93 ? C63 CDL 703 l 1 HETATM 76 C C64 CDL . . . UA 31 219.585 245.223 124.983 1 36.93 ? C64 CDL 703 l 1 HETATM 77 C C65 CDL . . . UA 31 219.832 244.538 123.644 1 36.93 ? C65 CDL 703 l 1 HETATM 78 C C66 CDL . . . UA 31 218.613 244.56 122.728 1 36.93 ? C66 CDL 703 l 1 HETATM 79 C C67 CDL . . . UA 31 217.722 245.78 122.954 1 36.93 ? C67 CDL 703 l 1 HETATM 80 C CB6 CDL . . . UA 31 218.274 237.398 138.348 1 36.93 ? CB6 CDL 703 l 1 HETATM 81 O OB8 CDL . . . UA 31 217.396 238.473 138.665 1 36.93 ? OB8 CDL 703 l 1 HETATM 82 C CB7 CDL . . . UA 31 216.028 238.119 138.572 1 36.93 ? CB7 CDL 703 l 1 HETATM 83 O OB9 CDL . . . UA 31 215.545 237.416 139.394 1 36.93 ? OB9 CDL 703 l 1 HETATM 84 C C71 CDL . . . UA 31 215.163 238.643 137.401 1 36.93 ? C71 CDL 703 l 1 HETATM 85 C C72 CDL . . . UA 31 215.475 237.942 136.071 1 36.93 ? C72 CDL 703 l 1 HETATM 86 C C73 CDL . . . UA 31 214.607 238.472 134.917 1 36.93 ? C73 CDL 703 l 1 HETATM 87 C C74 CDL . . . UA 31 215.101 239.823 134.377 1 36.93 ? C74 CDL 703 l 1 HETATM 88 C C75 CDL . . . UA 31 216.251 239.673 133.344 1 36.93 ? C75 CDL 703 l 1 HETATM 89 C C76 CDL . . . UA 31 216.031 240.547 132.081 1 36.93 ? C76 CDL 703 l 1 HETATM 90 C C77 CDL . . . UA 31 215.671 239.7 130.825 1 36.93 ? C77 CDL 703 l 1 HETATM 91 C C78 CDL . . . UA 31 214.316 240.099 130.22 1 36.93 ? C78 CDL 703 l 1 HETATM 92 C C79 CDL . . . UA 31 213.834 239.102 129.143 1 36.93 ? C79 CDL 703 l 1 HETATM 93 C C80 CDL . . . UA 31 212.346 239.318 128.762 1 36.93 ? C80 CDL 703 l 1 HETATM 94 C C81 CDL . . . UA 31 211.917 238.475 127.562 1 36.93 ? C81 CDL 703 l 1 HETATM 95 C C82 CDL . . . UA 31 210.39 238.579 127.28 1 36.93 ? C82 CDL 703 l 1 HETATM 96 C C83 CDL . . . UA 31 209.547 237.841 128.339 1 36.93 ? C83 CDL 703 l 1 HETATM 97 C C84 CDL . . . UA 31 208.088 238.355 128.4 1 36.93 ? C84 CDL 703 l 1 HETATM 98 C C85 CDL . . . UA 31 207.099 237.269 128.869 1 36.93 ? C85 CDL 703 l 1 HETATM 99 C C86 CDL . . . UA 31 205.719 237.841 129.208 1 36.93 ? C86 CDL 703 l 1 HETATM 100 C C87 CDL . . . UA 31 204.847 236.852 129.979 1 36.93 ? C87 CDL 703 l 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 100 #