data_7VYH # _model_server_result.job_id BfetwE9qXX_QtaJZueSzrA _model_server_result.datetime_utc '2024-12-21 17:14:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":302}' # _entry.id 7VYH # _exptl.entry_id 7VYH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 21 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 21 _struct_asym.id X _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 11 F CYS 24 1_555 E SG CYS 45 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 F CB SER 44 G SER 112 1_555 Z O1 8Q1 . G 8Q1 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale2 P C HIS 39 Q HIS 117 1_555 P N 2MR 40 Q 2MR 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 P C 2MR 40 Q 2MR 118 1_555 P N GLY 41 Q GLY 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A SG CYS 352 A CYS 379 1_555 S FE4 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc2 A SG CYS 355 A CYS 382 1_555 S FE1 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc3 A SG CYS 358 A CYS 385 1_555 S FE3 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc4 A SG CYS 398 A CYS 425 1_555 S FE2 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 B SG CYS 77 B CYS 113 1_555 U FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc6 B SG CYS 80 B CYS 116 1_555 U FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc7 B SG CYS 83 B CYS 119 1_555 U FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc8 B SG CYS 87 B CYS 123 1_555 V FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc9 B SG CYS 116 B CYS 152 1_555 V FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc10 B SG CYS 119 B CYS 155 1_555 V FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc11 B SG CYS 122 B CYS 158 1_555 V FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc12 B SG CYS 126 B CYS 162 1_555 U FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc13 C SG CYS 31 C CYS 71 1_555 W FE3 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc14 C SG CYS 32 C CYS 72 1_555 W FE2 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc15 C SG CYS 126 C CYS 166 1_555 W FE1 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc16 L SG CYS 36 M CYS 64 1_555 DA FE2 FES . M FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc17 L SG CYS 47 M CYS 75 1_555 DA FE2 FES . M FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc18 L SG CYS 50 M CYS 78 1_555 DA FE1 FES . M FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc19 L SG CYS 64 M CYS 92 1_555 DA FE1 FES . M FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc20 L NE2 HIS 96 M HIS 124 1_555 BA FE3 SF4 . M SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc21 L SG CYS 100 M CYS 128 1_555 BA FE2 SF4 . M SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc22 L SG CYS 103 M CYS 131 1_555 BA FE1 SF4 . M SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc23 L OE1 GLN 105 M GLN 133 1_555 EA MG MG . M MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc24 L SG CYS 109 M CYS 137 1_555 BA FE4 SF4 . M SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc25 L SG CYS 148 M CYS 176 1_555 CA FE4 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc26 L SG CYS 151 M CYS 179 1_555 CA FE1 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc27 L SG CYS 154 M CYS 182 1_555 CA FE3 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc28 L O ILE 195 M ILE 223 1_555 EA MG MG . M MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc29 L SG CYS 198 M CYS 226 1_555 CA FE2 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc30 L O VAL 200 M VAL 228 1_555 EA MG MG . M MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc31 L O LEU 203 M LEU 231 1_555 EA MG MG . M MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc32 N SG CYS 103 O CYS 135 1_555 GA FE1 FES . O FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc33 N SG CYS 108 O CYS 140 1_555 GA FE1 FES . O FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc34 N SG CYS 144 O CYS 176 1_555 GA FE2 FES . O FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc35 N SG CYS 148 O CYS 180 1_555 GA FE2 FES . O FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc36 Q SG CYS 59 T CYS 86 1_555 HA ZN ZN . T ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc37 Q NE2 HIS 68 T HIS 95 1_555 HA ZN ZN . T ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc38 Q SG CYS 84 T CYS 111 1_555 HA ZN ZN . T ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 7VYH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 19 SF4 A 1 501 501 SF4 SF4 . T 20 FMN A 1 502 502 FMN FMN . U 19 SF4 B 1 301 301 SF4 SF4 . V 19 SF4 B 1 302 302 SF4 SF4 . W 19 SF4 C 1 301 301 SF4 SF4 . X 21 PEE C 1 302 311 PEE PEE . Y 22 PLX C 1 303 312 PLX PLX . Z 23 8Q1 G 1 201 201 8Q1 8Q1 . AA 24 NDP J 1 401 401 NDP NDP . BA 19 SF4 M 1 801 801 SF4 SF4 . CA 19 SF4 M 1 802 802 SF4 SF4 . DA 25 FES M 1 803 803 FES FES . EA 26 MG M 1 804 805 MG MG . FA 27 CDL N 1 201 202 CDL CDL . GA 25 FES O 1 301 301 FES FES . HA 28 ZN T 1 201 150 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C23 PEE . . . X 21 105.865 138.179 138.835 1 49.43 ? C23 PEE 302 C 1 HETATM 2 C C22 PEE . . . X 21 106.046 139.109 140.034 1 49.43 ? C22 PEE 302 C 1 HETATM 3 C C21 PEE . . . X 21 104.724 139.717 140.51 1 49.43 ? C21 PEE 302 C 1 HETATM 4 C C20 PEE . . . X 21 103.658 138.653 140.776 1 49.43 ? C20 PEE 302 C 1 HETATM 5 C C19 PEE . . . X 21 102.484 139.205 141.587 1 49.43 ? C19 PEE 302 C 1 HETATM 6 C C18 PEE . . . X 21 102.921 139.688 142.971 1 49.43 ? C18 PEE 302 C 1 HETATM 7 C C17 PEE . . . X 21 101.747 139.86 143.936 1 49.43 ? C17 PEE 302 C 1 HETATM 8 C C16 PEE . . . X 21 100.974 141.153 143.688 1 49.43 ? C16 PEE 302 C 1 HETATM 9 C C15 PEE . . . X 21 100.689 141.907 144.987 1 49.43 ? C15 PEE 302 C 1 HETATM 10 C C14 PEE . . . X 21 101.922 141.987 145.893 1 49.43 ? C14 PEE 302 C 1 HETATM 11 C C13 PEE . . . X 21 102.173 143.409 146.406 1 49.43 ? C13 PEE 302 C 1 HETATM 12 C C12 PEE . . . X 21 103.299 143.47 147.447 1 49.43 ? C12 PEE 302 C 1 HETATM 13 C C11 PEE . . . X 21 102.766 143.281 148.872 1 49.43 ? C11 PEE 302 C 1 HETATM 14 C C10 PEE . . . X 21 103.77 143.708 149.951 1 49.43 ? C10 PEE 302 C 1 HETATM 15 O O4 PEE . . . X 21 104.794 144.212 149.646 1 49.43 ? O4 PEE 302 C 1 HETATM 16 O O2 PEE . . . X 21 103.462 143.503 151.304 1 49.43 ? O2 PEE 302 C 1 HETATM 17 C C2 PEE . . . X 21 104.428 142.782 152.015 1 49.43 ? C2 PEE 302 C 1 HETATM 18 C C1 PEE . . . X 21 104.308 143.128 153.495 1 49.43 ? C1 PEE 302 C 1 HETATM 19 O O3P PEE . . . X 21 104.675 144.473 153.659 1 49.43 ? O3P PEE 302 C 1 HETATM 20 P P PEE . . . X 21 103.978 145.341 154.879 1 49.43 ? P PEE 302 C 1 HETATM 21 O O2P PEE . . . X 21 103.243 146.524 154.3 1 49.43 ? O2P PEE 302 C 1 HETATM 22 O O1P PEE . . . X 21 103.002 144.465 155.623 1 49.43 ? O1P PEE 302 C 1 HETATM 23 O O4P PEE . . . X 21 105.15 145.882 155.911 1 49.43 ? O4P PEE 302 C 1 HETATM 24 C C4 PEE . . . X 21 105.716 144.985 156.833 1 49.43 ? C4 PEE 302 C 1 HETATM 25 C C5 PEE . . . X 21 107.184 145.362 157.04 1 49.43 ? C5 PEE 302 C 1 HETATM 26 N N PEE . . . X 21 107.284 146.575 157.829 1 49.43 ? N PEE 302 C 1 HETATM 27 C C3 PEE . . . X 21 104.194 141.286 151.827 1 49.43 ? C3 PEE 302 C 1 HETATM 28 O O3 PEE . . . X 21 105.273 140.752 151.112 1 49.43 ? O3 PEE 302 C 1 HETATM 29 C C30 PEE . . . X 21 105.201 139.365 150.924 1 49.43 ? C30 PEE 302 C 1 HETATM 30 O O5 PEE . . . X 21 104.332 138.745 151.436 1 49.43 ? O5 PEE 302 C 1 HETATM 31 C C31 PEE . . . X 21 106.249 138.647 150.07 1 49.43 ? C31 PEE 302 C 1 HETATM 32 C C32 PEE . . . X 21 105.935 138.692 148.571 1 49.43 ? C32 PEE 302 C 1 HETATM 33 C C33 PEE . . . X 21 104.593 138.036 148.24 1 49.43 ? C33 PEE 302 C 1 HETATM 34 C C34 PEE . . . X 21 104.285 138.081 146.743 1 49.43 ? C34 PEE 302 C 1 HETATM 35 C C35 PEE . . . X 21 105.262 137.228 145.929 1 49.43 ? C35 PEE 302 C 1 HETATM 36 C C36 PEE . . . X 21 104.757 136.971 144.508 1 49.43 ? C36 PEE 302 C 1 HETATM 37 C C37 PEE . . . X 21 105.277 135.649 143.943 1 49.43 ? C37 PEE 302 C 1 HETATM 38 C C38 PEE . . . X 21 106.782 135.689 143.673 1 49.43 ? C38 PEE 302 C 1 HETATM 39 C C39 PEE . . . X 21 107.201 134.679 142.611 1 49.43 ? C39 PEE 302 C 1 HETATM 40 C C40 PEE . . . X 21 108.62 134.159 142.814 1 49.43 ? C40 PEE 302 C 1 HETATM 41 C C41 PEE . . . X 21 109.122 133.421 141.578 1 49.43 ? C41 PEE 302 C 1 HETATM 42 C C42 PEE . . . X 21 110.275 132.467 141.867 1 49.43 ? C42 PEE 302 C 1 HETATM 43 C C43 PEE . . . X 21 110.658 131.655 140.634 1 49.43 ? C43 PEE 302 C 1 HETATM 44 C C44 PEE . . . X 21 109.61 130.61 140.27 1 49.43 ? C44 PEE 302 C 1 HETATM 45 C C45 PEE . . . X 21 110.099 129.184 140.516 1 49.43 ? C45 PEE 302 C 1 HETATM 46 C C46 PEE . . . X 21 109.547 128.2 139.486 1 49.43 ? C46 PEE 302 C 1 HETATM 47 C C47 PEE . . . X 21 110.379 126.921 139.391 1 49.43 ? C47 PEE 302 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 47 #