data_7VYI # _model_server_result.job_id S2SKCJsfIETVSdO6VLKadg _model_server_result.datetime_utc '2024-12-21 16:39:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":101}' # _entry.id 7VYI # _exptl.entry_id 7VYI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 EA N N ? 30 IA N N ? 30 MA N N ? 30 PA N N ? 30 QA N N ? 30 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 7VYI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE U 1 101 101 PEE PEE . EA 30 PEE U 1 102 401 PEE PEE . FA 31 8Q1 X 1 201 201 8Q1 8Q1 . GA 32 CDL a 1 201 201 CDL CDL . HA 33 PLX a 1 202 101 PLX PLX . IA 30 PEE b 1 201 720 PEE PEE . JA 33 PLX g 1 201 705 PLX PLX . KA 32 CDL g 1 202 102 CDL CDL . LA 32 CDL i 1 401 401 CDL CDL . MA 30 PEE i 1 402 718 PEE PEE . NA 33 PLX j 1 201 203 PLX PLX . OA 32 CDL l 1 701 713 CDL CDL . PA 30 PEE l 1 702 719 PEE PEE . QA 30 PEE m 1 201 202 PEE PEE . RA 30 PEE r 1 501 202 PEE PEE . SA 33 PLX r 1 502 205 PLX PLX . TA 33 PLX r 1 503 201 PLX PLX . UA 32 CDL r 1 504 712 CDL CDL . VA 32 CDL r 1 505 714 CDL CDL . WA 34 UQ s 1 401 403 UQ UQ . XA 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . DA 30 163.279 111.997 124.659 1 32.34 ? C27 PEE 101 U 1 HETATM 2 C C26 PEE . . . DA 30 161.768 112.229 124.643 1 32.34 ? C26 PEE 101 U 1 HETATM 3 C C25 PEE . . . DA 30 161.389 113.616 125.147 1 32.34 ? C25 PEE 101 U 1 HETATM 4 C C24 PEE . . . DA 30 159.902 113.904 124.954 1 32.34 ? C24 PEE 101 U 1 HETATM 5 C C23 PEE . . . DA 30 159.038 113.089 125.915 1 32.34 ? C23 PEE 101 U 1 HETATM 6 C C22 PEE . . . DA 30 158.673 113.866 127.178 1 32.34 ? C22 PEE 101 U 1 HETATM 7 C C21 PEE . . . DA 30 157.295 114.525 127.064 1 32.34 ? C21 PEE 101 U 1 HETATM 8 C C20 PEE . . . DA 30 156.868 115.241 128.345 1 32.34 ? C20 PEE 101 U 1 HETATM 9 C C19 PEE . . . DA 30 157.288 114.484 129.605 1 32.34 ? C19 PEE 101 U 1 HETATM 10 C C18 PEE . . . DA 30 158.205 115.32 130.498 1 32.34 ? C18 PEE 101 U 1 HETATM 11 C C17 PEE . . . DA 30 157.505 116.558 131.061 1 32.34 ? C17 PEE 101 U 1 HETATM 12 C C16 PEE . . . DA 30 158.384 117.307 132.063 1 32.34 ? C16 PEE 101 U 1 HETATM 13 C C15 PEE . . . DA 30 159.216 116.352 132.92 1 32.34 ? C15 PEE 101 U 1 HETATM 14 C C14 PEE . . . DA 30 160.072 117.084 133.956 1 32.34 ? C14 PEE 101 U 1 HETATM 15 C C13 PEE . . . DA 30 160.98 116.123 134.73 1 32.34 ? C13 PEE 101 U 1 HETATM 16 C C12 PEE . . . DA 30 161.29 116.632 136.143 1 32.34 ? C12 PEE 101 U 1 HETATM 17 C C11 PEE . . . DA 30 161.655 115.49 137.098 1 32.34 ? C11 PEE 101 U 1 HETATM 18 C C10 PEE . . . DA 30 161.794 115.972 138.547 1 32.34 ? C10 PEE 101 U 1 HETATM 19 O O4 PEE . . . DA 30 162.499 116.888 138.801 1 32.34 ? O4 PEE 101 U 1 HETATM 20 O O2 PEE . . . DA 30 161.081 115.327 139.569 1 32.34 ? O2 PEE 101 U 1 HETATM 21 C C2 PEE . . . DA 30 161.877 114.906 140.643 1 32.34 ? C2 PEE 101 U 1 HETATM 22 C C1 PEE . . . DA 30 161.43 115.619 141.918 1 32.34 ? C1 PEE 101 U 1 HETATM 23 O O3P PEE . . . DA 30 160.131 115.189 142.231 1 32.34 ? O3P PEE 101 U 1 HETATM 24 P P PEE . . . DA 30 159.158 116.201 143.106 1 32.34 ? P PEE 101 U 1 HETATM 25 O O2P PEE . . . DA 30 157.832 116.364 142.399 1 32.34 ? O2P PEE 101 U 1 HETATM 26 O O1P PEE . . . DA 30 159.825 117.548 143.241 1 32.34 ? O1P PEE 101 U 1 HETATM 27 O O4P PEE . . . DA 30 158.905 115.557 144.607 1 32.34 ? O4P PEE 101 U 1 HETATM 28 C C4 PEE . . . DA 30 159.679 116.031 145.679 1 32.34 ? C4 PEE 101 U 1 HETATM 29 C C5 PEE . . . DA 30 158.986 115.633 146.984 1 32.34 ? C5 PEE 101 U 1 HETATM 30 N N PEE . . . DA 30 159.162 114.214 147.236 1 32.34 ? N PEE 101 U 1 HETATM 31 C C3 PEE . . . DA 30 161.724 113.401 140.831 1 32.34 ? C3 PEE 101 U 1 HETATM 32 O O3 PEE . . . DA 30 161.6 112.807 139.57 1 32.34 ? O3 PEE 101 U 1 HETATM 33 C C30 PEE . . . DA 30 162.549 111.807 139.324 1 32.34 ? C30 PEE 101 U 1 HETATM 34 O O5 PEE . . . DA 30 162.574 110.837 140.004 1 32.34 ? O5 PEE 101 U 1 HETATM 35 C C31 PEE . . . DA 30 163.551 111.966 138.178 1 32.34 ? C31 PEE 101 U 1 HETATM 36 C C32 PEE . . . DA 30 162.945 111.597 136.821 1 32.34 ? C32 PEE 101 U 1 HETATM 37 C C33 PEE . . . DA 30 162.182 110.27 136.869 1 32.34 ? C33 PEE 101 U 1 HETATM 38 C C34 PEE . . . DA 30 162.554 109.337 135.715 1 32.34 ? C34 PEE 101 U 1 HETATM 39 C C35 PEE . . . DA 30 162.203 109.942 134.353 1 32.34 ? C35 PEE 101 U 1 HETATM 40 C C36 PEE . . . DA 30 162.125 108.884 133.249 1 32.34 ? C36 PEE 101 U 1 HETATM 41 C C37 PEE . . . DA 30 163.497 108.517 132.68 1 32.34 ? C37 PEE 101 U 1 HETATM 42 C C38 PEE . . . DA 30 163.386 107.579 131.478 1 32.34 ? C38 PEE 101 U 1 HETATM 43 C C39 PEE . . . DA 30 162.344 106.486 131.692 1 32.34 ? C39 PEE 101 U 1 HETATM 44 C C40 PEE . . . DA 30 161.826 105.913 130.378 1 32.34 ? C40 PEE 101 U 1 HETATM 45 C C41 PEE . . . DA 30 162.933 105.269 129.553 1 32.34 ? C41 PEE 101 U 1 HETATM 46 C C42 PEE . . . DA 30 162.45 104.819 128.18 1 32.34 ? C42 PEE 101 U 1 HETATM 47 C C43 PEE . . . DA 30 161.234 103.902 128.265 1 32.34 ? C43 PEE 101 U 1 HETATM 48 C C44 PEE . . . DA 30 161.55 102.58 128.956 1 32.34 ? C44 PEE 101 U 1 HETATM 49 C C45 PEE . . . DA 30 160.307 101.925 129.556 1 32.34 ? C45 PEE 101 U 1 HETATM 50 C C46 PEE . . . DA 30 159.931 100.628 128.842 1 32.34 ? C46 PEE 101 U 1 HETATM 51 C C47 PEE . . . DA 30 159.24 100.877 127.503 1 32.34 ? C47 PEE 101 U 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #