data_7VYI
#
_model_server_result.job_id            foBEOmaBLHxDRExMG5EiaQ 
_model_server_result.datetime_utc      '2024-12-30 17:53:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vyi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"GA","auth_seq_id":201}' 
#
_entry.id    7VYI 
#
_exptl.entry_id    7VYI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          32 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VYI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VYI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 32 GA N N 
? 32 KA N N 
? 32 LA N N 
? 32 OA N N 
? 32 UA N N 
? 32 VA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VYI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 101 101 PEE PEE . 
EA 30 PEE U 1 102 401 PEE PEE . 
FA 31 8Q1 X 1 201 201 8Q1 8Q1 . 
GA 32 CDL a 1 201 201 CDL CDL . 
HA 33 PLX a 1 202 101 PLX PLX . 
IA 30 PEE b 1 201 720 PEE PEE . 
JA 33 PLX g 1 201 705 PLX PLX . 
KA 32 CDL g 1 202 102 CDL CDL . 
LA 32 CDL i 1 401 401 CDL CDL . 
MA 30 PEE i 1 402 718 PEE PEE . 
NA 33 PLX j 1 201 203 PLX PLX . 
OA 32 CDL l 1 701 713 CDL CDL . 
PA 30 PEE l 1 702 719 PEE PEE . 
QA 30 PEE m 1 201 202 PEE PEE . 
RA 30 PEE r 1 501 202 PEE PEE . 
SA 33 PLX r 1 502 205 PLX PLX . 
TA 33 PLX r 1 503 201 PLX PLX . 
UA 32 CDL r 1 504 712 CDL CDL . 
VA 32 CDL r 1 505 714 CDL CDL . 
WA 34 UQ s 1 401 403 UQ UQ . 
XA 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . GA 32 239.618 185.337 99.197 1 34.59 ? C1 CDL 201 a 1 
HETATM 2 O O1 CDL . . . GA 32 239.731 184.427 98.143 1 34.59 ? O1 CDL 201 a 1 
HETATM 3 C CA2 CDL . . . GA 32 240.85 185.159 100.12 1 34.59 ? CA2 CDL 201 a 1 
HETATM 4 O OA2 CDL . . . GA 32 241.813 186.141 99.768 1 34.59 ? OA2 CDL 201 a 1 
HETATM 5 P PA1 CDL . . . GA 32 243.41 185.837 100.096 1 34.59 ? PA1 CDL 201 a 1 
HETATM 6 O OA3 CDL . . . GA 32 243.843 184.598 99.354 1 34.59 ? OA3 CDL 201 a 1 
HETATM 7 O OA4 CDL . . . GA 32 244.244 186.999 99.65 1 34.59 ? OA4 CDL 201 a 1 
HETATM 8 O OA5 CDL . . . GA 32 243.613 185.609 101.728 1 34.59 ? OA5 CDL 201 a 1 
HETATM 9 C CA3 CDL . . . GA 32 244.785 184.941 102.165 1 34.59 ? CA3 CDL 201 a 1 
HETATM 10 C CA4 CDL . . . GA 32 244.679 184.682 103.661 1 34.59 ? CA4 CDL 201 a 1 
HETATM 11 O OA6 CDL . . . GA 32 243.574 185.362 104.195 1 34.59 ? OA6 CDL 201 a 1 
HETATM 12 C CA5 CDL . . . GA 32 242.708 184.527 104.954 1 34.59 ? CA5 CDL 201 a 1 
HETATM 13 O OA7 CDL . . . GA 32 242.743 183.346 104.806 1 34.59 ? OA7 CDL 201 a 1 
HETATM 14 C C11 CDL . . . GA 32 241.717 185.145 105.989 1 34.59 ? C11 CDL 201 a 1 
HETATM 15 C C12 CDL . . . GA 32 241.892 184.54 107.387 1 34.59 ? C12 CDL 201 a 1 
HETATM 16 C C13 CDL . . . GA 32 240.74 184.899 108.322 1 34.59 ? C13 CDL 201 a 1 
HETATM 17 C C14 CDL . . . GA 32 239.921 183.663 108.741 1 34.59 ? C14 CDL 201 a 1 
HETATM 18 C C15 CDL . . . GA 32 238.902 183.985 109.873 1 34.59 ? C15 CDL 201 a 1 
HETATM 19 C C16 CDL . . . GA 32 238.642 182.762 110.786 1 34.59 ? C16 CDL 201 a 1 
HETATM 20 C C17 CDL . . . GA 32 237.167 182.676 111.284 1 34.59 ? C17 CDL 201 a 1 
HETATM 21 C C18 CDL . . . GA 32 236.824 181.264 111.825 1 34.59 ? C18 CDL 201 a 1 
HETATM 22 C C19 CDL . . . GA 32 235.439 181.207 112.529 1 34.59 ? C19 CDL 201 a 1 
HETATM 23 C C20 CDL . . . GA 32 235.565 180.961 114.051 1 34.59 ? C20 CDL 201 a 1 
HETATM 24 C C21 CDL . . . GA 32 236.257 182.142 114.78 1 34.59 ? C21 CDL 201 a 1 
HETATM 25 C C22 CDL . . . GA 32 236.246 181.98 116.327 1 34.59 ? C22 CDL 201 a 1 
HETATM 26 C C23 CDL . . . GA 32 237.154 183.013 117.035 1 34.59 ? C23 CDL 201 a 1 
HETATM 27 C C24 CDL . . . GA 32 238.635 182.556 117.105 1 34.59 ? C24 CDL 201 a 1 
HETATM 28 C C25 CDL . . . GA 32 239.485 183.118 115.952 1 34.59 ? C25 CDL 201 a 1 
HETATM 29 C C26 CDL . . . GA 32 240.958 182.653 116.022 1 34.59 ? C26 CDL 201 a 1 
HETATM 30 C C27 CDL . . . GA 32 241.654 183.101 117.312 1 34.59 ? C27 CDL 201 a 1 
HETATM 31 C CA6 CDL . . . GA 32 245.963 185.177 104.351 1 34.59 ? CA6 CDL 201 a 1 
HETATM 32 O OA8 CDL . . . GA 32 246.068 186.57 104.137 1 34.59 ? OA8 CDL 201 a 1 
HETATM 33 C CA7 CDL . . . GA 32 247.095 187.195 104.909 1 34.59 ? CA7 CDL 201 a 1 
HETATM 34 O OA9 CDL . . . GA 32 247.433 186.719 105.937 1 34.59 ? OA9 CDL 201 a 1 
HETATM 35 C C31 CDL . . . GA 32 247.764 188.487 104.403 1 34.59 ? C31 CDL 201 a 1 
HETATM 36 C C32 CDL . . . GA 32 247.214 189.73 105.097 1 34.59 ? C32 CDL 201 a 1 
HETATM 37 C C33 CDL . . . GA 32 248.33 190.62 105.663 1 34.59 ? C33 CDL 201 a 1 
HETATM 38 C C34 CDL . . . GA 32 249.543 190.727 104.708 1 34.59 ? C34 CDL 201 a 1 
HETATM 39 C C35 CDL . . . GA 32 250.155 192.153 104.69 1 34.59 ? C35 CDL 201 a 1 
HETATM 40 C C36 CDL . . . GA 32 251.602 192.185 105.237 1 34.59 ? C36 CDL 201 a 1 
HETATM 41 C C37 CDL . . . GA 32 251.794 191.269 106.457 1 34.59 ? C37 CDL 201 a 1 
HETATM 42 C C38 CDL . . . GA 32 252.953 190.283 106.266 1 34.59 ? C38 CDL 201 a 1 
HETATM 43 C C39 CDL . . . GA 32 254.25 190.994 105.835 1 34.59 ? C39 CDL 201 a 1 
HETATM 44 C C40 CDL . . . GA 32 254.985 191.635 107.033 1 34.59 ? C40 CDL 201 a 1 
HETATM 45 C C41 CDL . . . GA 32 255.566 190.563 108.018 1 34.59 ? C41 CDL 201 a 1 
HETATM 46 C C42 CDL . . . GA 32 256.751 189.777 107.394 1 34.59 ? C42 CDL 201 a 1 
HETATM 47 C C43 CDL . . . GA 32 257.955 190.698 107.044 1 34.59 ? C43 CDL 201 a 1 
HETATM 48 C C44 CDL . . . GA 32 258.5 191.451 108.286 1 34.59 ? C44 CDL 201 a 1 
HETATM 49 C C45 CDL . . . GA 32 259.706 192.324 107.95 1 34.59 ? C45 CDL 201 a 1 
HETATM 50 C C46 CDL . . . GA 32 259.299 193.672 107.323 1 34.59 ? C46 CDL 201 a 1 
HETATM 51 C C47 CDL . . . GA 32 260.391 194.241 106.422 1 34.59 ? C47 CDL 201 a 1 
HETATM 52 C CB2 CDL . . . GA 32 238.264 185.057 99.933 1 34.59 ? CB2 CDL 201 a 1 
HETATM 53 O OB2 CDL . . . GA 32 238.55 184.591 101.245 1 34.59 ? OB2 CDL 201 a 1 
HETATM 54 P PB2 CDL . . . GA 32 237.261 184.374 102.296 1 34.59 ? PB2 CDL 201 a 1 
HETATM 55 O OB3 CDL . . . GA 32 235.967 184.618 101.545 1 34.59 ? OB3 CDL 201 a 1 
HETATM 56 O OB4 CDL . . . GA 32 237.274 182.962 102.829 1 34.59 ? OB4 CDL 201 a 1 
HETATM 57 O OB5 CDL . . . GA 32 237.377 185.45 103.575 1 34.59 ? OB5 CDL 201 a 1 
HETATM 58 C CB3 CDL . . . GA 32 237.457 184.92 104.89 1 34.59 ? CB3 CDL 201 a 1 
HETATM 59 C CB4 CDL . . . GA 32 236.84 185.933 105.864 1 34.59 ? CB4 CDL 201 a 1 
HETATM 60 O OB6 CDL . . . GA 32 237.716 186.118 106.95 1 34.59 ? OB6 CDL 201 a 1 
HETATM 61 C CB5 CDL . . . GA 32 237.782 187.458 107.429 1 34.59 ? CB5 CDL 201 a 1 
HETATM 62 O OB7 CDL . . . GA 32 236.786 188.066 107.64 1 34.59 ? OB7 CDL 201 a 1 
HETATM 63 C C51 CDL . . . GA 32 239.153 188.122 107.671 1 34.59 ? C51 CDL 201 a 1 
HETATM 64 C C52 CDL . . . GA 32 239.017 189.579 108.144 1 34.59 ? C52 CDL 201 a 1 
HETATM 65 C C53 CDL . . . GA 32 239.301 190.588 107.019 1 34.59 ? C53 CDL 201 a 1 
HETATM 66 C C54 CDL . . . GA 32 238.969 192.034 107.445 1 34.59 ? C54 CDL 201 a 1 
HETATM 67 C C55 CDL . . . GA 32 240.177 192.976 107.335 1 34.59 ? C55 CDL 201 a 1 
HETATM 68 C C56 CDL . . . GA 32 239.99 194.256 108.19 1 34.59 ? C56 CDL 201 a 1 
HETATM 69 C C57 CDL . . . GA 32 239.024 195.263 107.532 1 34.59 ? C57 CDL 201 a 1 
HETATM 70 C C58 CDL . . . GA 32 237.903 195.713 108.501 1 34.59 ? C58 CDL 201 a 1 
HETATM 71 C C59 CDL . . . GA 32 236.877 196.658 107.827 1 34.59 ? C59 CDL 201 a 1 
HETATM 72 C C60 CDL . . . GA 32 236.007 197.389 108.865 1 34.59 ? C60 CDL 201 a 1 
HETATM 73 C C61 CDL . . . GA 32 236.836 198.383 109.723 1 34.59 ? C61 CDL 201 a 1 
HETATM 74 C C62 CDL . . . GA 32 236.126 199.742 109.909 1 34.59 ? C62 CDL 201 a 1 
HETATM 75 C C63 CDL . . . GA 32 235.327 199.806 111.219 1 34.59 ? C63 CDL 201 a 1 
HETATM 76 C CB6 CDL . . . GA 32 235.503 185.401 106.369 1 34.59 ? CB6 CDL 201 a 1 
HETATM 77 O OB8 CDL . . . GA 32 235.76 184.308 107.246 1 34.59 ? OB8 CDL 201 a 1 
HETATM 78 C CB7 CDL . . . GA 32 234.666 183.421 107.39 1 34.59 ? CB7 CDL 201 a 1 
HETATM 79 O OB9 CDL . . . GA 32 234.103 183.014 106.428 1 34.59 ? OB9 CDL 201 a 1 
HETATM 80 C C71 CDL . . . GA 32 234.204 182.98 108.799 1 34.59 ? C71 CDL 201 a 1 
HETATM 81 C C72 CDL . . . GA 32 232.824 183.546 109.156 1 34.59 ? C72 CDL 201 a 1 
HETATM 82 C C73 CDL . . . GA 32 232.135 182.755 110.28 1 34.59 ? C73 CDL 201 a 1 
HETATM 83 C C74 CDL . . . GA 32 231.752 183.661 111.46 1 34.59 ? C74 CDL 201 a 1 
HETATM 84 C C75 CDL . . . GA 32 231.057 182.882 112.608 1 34.59 ? C75 CDL 201 a 1 
HETATM 85 C C76 CDL . . . GA 32 231.975 182.723 113.848 1 34.59 ? C76 CDL 201 a 1 
HETATM 86 C C77 CDL . . . GA 32 231.936 181.279 114.431 1 34.59 ? C77 CDL 201 a 1 
HETATM 87 C C78 CDL . . . GA 32 231.393 181.254 115.866 1 34.59 ? C78 CDL 201 a 1 
HETATM 88 C C79 CDL . . . GA 32 232.14 182.243 116.785 1 34.59 ? C79 CDL 201 a 1 
HETATM 89 C C80 CDL . . . GA 32 231.239 182.785 117.924 1 34.59 ? C80 CDL 201 a 1 
HETATM 90 C C81 CDL . . . GA 32 231.999 183.714 118.871 1 34.59 ? C81 CDL 201 a 1 
HETATM 91 C C82 CDL . . . GA 32 231.054 184.437 119.874 1 34.59 ? C82 CDL 201 a 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    84 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           91 
#