data_7VYI # _model_server_result.job_id hMFXtHE5SnDWC1ZGIly-LQ _model_server_result.datetime_utc '2024-10-19 11:53:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"QA","auth_seq_id":201}' # _entry.id 7VYI # _exptl.entry_id 7VYI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 EA N N ? 30 IA N N ? 30 MA N N ? 30 PA N N ? 30 QA N N ? 30 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 7VYI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE U 1 101 101 PEE PEE . EA 30 PEE U 1 102 401 PEE PEE . FA 31 8Q1 X 1 201 201 8Q1 8Q1 . GA 32 CDL a 1 201 201 CDL CDL . HA 33 PLX a 1 202 101 PLX PLX . IA 30 PEE b 1 201 720 PEE PEE . JA 33 PLX g 1 201 705 PLX PLX . KA 32 CDL g 1 202 102 CDL CDL . LA 32 CDL i 1 401 401 CDL CDL . MA 30 PEE i 1 402 718 PEE PEE . NA 33 PLX j 1 201 203 PLX PLX . OA 32 CDL l 1 701 713 CDL CDL . PA 30 PEE l 1 702 719 PEE PEE . QA 30 PEE m 1 201 202 PEE PEE . RA 30 PEE r 1 501 202 PEE PEE . SA 33 PLX r 1 502 205 PLX PLX . TA 33 PLX r 1 503 201 PLX PLX . UA 32 CDL r 1 504 712 CDL CDL . VA 32 CDL r 1 505 714 CDL CDL . WA 34 UQ s 1 401 403 UQ UQ . XA 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . QA 30 132.702 139.045 128.404 1 40.72 ? C27 PEE 201 m 1 HETATM 2 C C26 PEE . . . QA 30 132.757 140.434 127.768 1 40.72 ? C26 PEE 201 m 1 HETATM 3 C C25 PEE . . . QA 30 132.316 140.43 126.308 1 40.72 ? C25 PEE 201 m 1 HETATM 4 C C24 PEE . . . QA 30 132.025 141.839 125.795 1 40.72 ? C24 PEE 201 m 1 HETATM 5 C C23 PEE . . . QA 30 130.83 141.887 124.844 1 40.72 ? C23 PEE 201 m 1 HETATM 6 C C22 PEE . . . QA 30 131.198 141.504 123.411 1 40.72 ? C22 PEE 201 m 1 HETATM 7 C C21 PEE . . . QA 30 130.029 141.715 122.443 1 40.72 ? C21 PEE 201 m 1 HETATM 8 C C20 PEE . . . QA 30 130.454 141.61 120.977 1 40.72 ? C20 PEE 201 m 1 HETATM 9 C C19 PEE . . . QA 30 130.105 140.253 120.363 1 40.72 ? C19 PEE 201 m 1 HETATM 10 C C18 PEE . . . QA 30 130.233 140.258 118.838 1 40.72 ? C18 PEE 201 m 1 HETATM 11 C C17 PEE . . . QA 30 129.902 138.898 118.222 1 40.72 ? C17 PEE 201 m 1 HETATM 12 C C16 PEE . . . QA 30 130.167 138.856 116.717 1 40.72 ? C16 PEE 201 m 1 HETATM 13 C C15 PEE . . . QA 30 128.946 139.281 115.898 1 40.72 ? C15 PEE 201 m 1 HETATM 14 C C14 PEE . . . QA 30 129.165 139.164 114.386 1 40.72 ? C14 PEE 201 m 1 HETATM 15 C C13 PEE . . . QA 30 129.966 137.916 113.996 1 40.72 ? C13 PEE 201 m 1 HETATM 16 C C12 PEE . . . QA 30 129.136 136.627 114.089 1 40.72 ? C12 PEE 201 m 1 HETATM 17 C C11 PEE . . . QA 30 128.625 136.139 112.727 1 40.72 ? C11 PEE 201 m 1 HETATM 18 C C10 PEE . . . QA 30 129.693 135.377 111.929 1 40.72 ? C10 PEE 201 m 1 HETATM 19 O O4 PEE . . . QA 30 130.739 135.887 111.707 1 40.72 ? O4 PEE 201 m 1 HETATM 20 O O2 PEE . . . QA 30 129.429 134.084 111.445 1 40.72 ? O2 PEE 201 m 1 HETATM 21 C C2 PEE . . . QA 30 129.516 133.029 112.369 1 40.72 ? C2 PEE 201 m 1 HETATM 22 C C1 PEE . . . QA 30 129.721 131.722 111.604 1 40.72 ? C1 PEE 201 m 1 HETATM 23 O O3P PEE . . . QA 30 131.077 131.633 111.249 1 40.72 ? O3P PEE 201 m 1 HETATM 24 P P PEE . . . QA 30 131.709 130.149 110.882 1 40.72 ? P PEE 201 m 1 HETATM 25 O O2P PEE . . . QA 30 131.671 129.26 112.1 1 40.72 ? O2P PEE 201 m 1 HETATM 26 O O1P PEE . . . QA 30 133.139 130.303 110.428 1 40.72 ? O1P PEE 201 m 1 HETATM 27 O O4P PEE . . . QA 30 130.823 129.472 109.664 1 40.72 ? O4P PEE 201 m 1 HETATM 28 C C4 PEE . . . QA 30 130.786 130.137 108.427 1 40.72 ? C4 PEE 201 m 1 HETATM 29 C C5 PEE . . . QA 30 130.29 129.151 107.369 1 40.72 ? C5 PEE 201 m 1 HETATM 30 N N PEE . . . QA 30 128.868 128.913 107.534 1 40.72 ? N PEE 201 m 1 HETATM 31 C C3 PEE . . . QA 30 130.691 133.222 113.324 1 40.72 ? C3 PEE 201 m 1 HETATM 32 O O3 PEE . . . QA 30 130.406 132.534 114.509 1 40.72 ? O3 PEE 201 m 1 HETATM 33 C C30 PEE . . . QA 30 131.526 131.942 115.104 1 40.72 ? C30 PEE 201 m 1 HETATM 34 O O5 PEE . . . QA 30 132.114 131.083 114.539 1 40.72 ? O5 PEE 201 m 1 HETATM 35 C C31 PEE . . . QA 30 131.992 132.418 116.482 1 40.72 ? C31 PEE 201 m 1 HETATM 36 C C32 PEE . . . QA 30 131.1 133.537 117.025 1 40.72 ? C32 PEE 201 m 1 HETATM 37 C C33 PEE . . . QA 30 131.561 134.056 118.389 1 40.72 ? C33 PEE 201 m 1 HETATM 38 C C34 PEE . . . QA 30 130.958 135.426 118.71 1 40.72 ? C34 PEE 201 m 1 HETATM 39 C C35 PEE . . . QA 30 131.3 135.905 120.125 1 40.72 ? C35 PEE 201 m 1 HETATM 40 C C36 PEE . . . QA 30 130.578 135.091 121.203 1 40.72 ? C36 PEE 201 m 1 HETATM 41 C C37 PEE . . . QA 30 130.34 135.899 122.481 1 40.72 ? C37 PEE 201 m 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #