data_7VYI # _model_server_result.job_id vR6qhc5xm7Q9eO2mEz3rNg _model_server_result.datetime_utc '2024-12-21 17:23:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":202}' # _entry.id 7VYI # _exptl.entry_id 7VYI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 767.132 _entity.id 33 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 33 HA N N ? 33 JA N N ? 33 NA N N ? 33 SA N N ? 33 TA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C42 H89 N O8 P 1' _chem_comp.formula_weight 767.132 _chem_comp.id PLX _chem_comp.mon_nstd_flag . _chem_comp.name (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VYI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE U 1 101 101 PEE PEE . EA 30 PEE U 1 102 401 PEE PEE . FA 31 8Q1 X 1 201 201 8Q1 8Q1 . GA 32 CDL a 1 201 201 CDL CDL . HA 33 PLX a 1 202 101 PLX PLX . IA 30 PEE b 1 201 720 PEE PEE . JA 33 PLX g 1 201 705 PLX PLX . KA 32 CDL g 1 202 102 CDL CDL . LA 32 CDL i 1 401 401 CDL CDL . MA 30 PEE i 1 402 718 PEE PEE . NA 33 PLX j 1 201 203 PLX PLX . OA 32 CDL l 1 701 713 CDL CDL . PA 30 PEE l 1 702 719 PEE PEE . QA 30 PEE m 1 201 202 PEE PEE . RA 30 PEE r 1 501 202 PEE PEE . SA 33 PLX r 1 502 205 PLX PLX . TA 33 PLX r 1 503 201 PLX PLX . UA 32 CDL r 1 504 712 CDL CDL . VA 32 CDL r 1 505 714 CDL CDL . WA 34 UQ s 1 401 403 UQ UQ . XA 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C23 PLX . . . HA 33 238.414 174.114 107.402 1 33.54 ? C23 PLX 202 a 1 HETATM 2 C C22 PLX . . . HA 33 236.913 173.704 107.31 1 33.54 ? C22 PLX 202 a 1 HETATM 3 C C21 PLX . . . HA 33 235.963 174.944 107.224 1 33.54 ? C21 PLX 202 a 1 HETATM 4 C C20 PLX . . . HA 33 234.469 174.54 106.991 1 33.54 ? C20 PLX 202 a 1 HETATM 5 C C19 PLX . . . HA 33 233.962 173.505 108.049 1 33.54 ? C19 PLX 202 a 1 HETATM 6 C C18 PLX . . . HA 33 232.511 172.986 107.732 1 33.54 ? C18 PLX 202 a 1 HETATM 7 C C17 PLX . . . HA 33 231.949 172.063 108.883 1 33.54 ? C17 PLX 202 a 1 HETATM 8 C C16 PLX . . . HA 33 230.886 171.036 108.363 1 33.54 ? C16 PLX 202 a 1 HETATM 9 C C15 PLX . . . HA 33 230.244 170.203 109.536 1 33.54 ? C15 PLX 202 a 1 HETATM 10 C C14 PLX . . . HA 33 228.7 170.436 109.66 1 33.54 ? C14 PLX 202 a 1 HETATM 11 C C13 PLX . . . HA 33 227.868 169.268 109.009 1 33.54 ? C13 PLX 202 a 1 HETATM 12 C C12 PLX . . . HA 33 226.332 169.568 108.988 1 33.54 ? C12 PLX 202 a 1 HETATM 13 C C11 PLX . . . HA 33 225.813 169.902 107.549 1 33.54 ? C11 PLX 202 a 1 HETATM 14 C C10 PLX . . . HA 33 225.14 168.68 106.843 1 33.54 ? C10 PLX 202 a 1 HETATM 15 C C9 PLX . . . HA 33 224.85 167.485 107.822 1 33.54 ? C9 PLX 202 a 1 HETATM 16 C C8 PLX . . . HA 33 223.699 166.542 107.305 1 33.54 ? C8 PLX 202 a 1 HETATM 17 C C7 PLX . . . HA 33 223.455 166.682 105.752 1 33.54 ? C7 PLX 202 a 1 HETATM 18 C C6 PLX . . . HA 33 223.369 165.302 105.047 1 33.54 ? C6 PLX 202 a 1 HETATM 19 O O7 PLX . . . HA 33 222.575 165.408 103.927 1 33.54 ? O7 PLX 202 a 1 HETATM 20 O O6 PLX . . . HA 33 224.67 164.883 104.665 1 33.54 ? O6 PLX 202 a 1 HETATM 21 C C4 PLX . . . HA 33 224.99 163.574 105.064 1 33.54 ? C4 PLX 202 a 1 HETATM 22 C C3 PLX . . . HA 33 224.614 162.594 103.942 1 33.54 ? C3 PLX 202 a 1 HETATM 23 O O4 PLX . . . HA 33 224.41 163.351 102.744 1 33.54 ? O4 PLX 202 a 1 HETATM 24 P P1 PLX . . . HA 33 223.43 162.705 101.551 1 33.54 ? P1 PLX 202 a 1 HETATM 25 O O1 PLX . . . HA 33 223.633 163.58 100.143 1 33.54 ? O1 PLX 202 a 1 HETATM 26 C C2 PLX . . . HA 33 223.452 162.908 98.896 1 33.54 ? C2 PLX 202 a 1 HETATM 27 C C1 PLX . . . HA 33 224.288 163.672 97.813 1 33.54 ? C1 PLX 202 a 1 HETATM 28 N N1 PLX . . . HA 33 225.629 163.027 97.613 1 33.54 ? N1 PLX 202 a 1 HETATM 29 C C1C PLX . . . HA 33 225.395 161.789 96.844 1 33.54 ? C1C PLX 202 a 1 HETATM 30 C C1B PLX . . . HA 33 226.45 163.993 96.824 1 33.54 ? C1B PLX 202 a 1 HETATM 31 C C1A PLX . . . HA 33 226.44 162.644 98.796 1 33.54 ? C1A PLX 202 a 1 HETATM 32 O O2 PLX . . . HA 33 221.982 162.779 101.986 1 33.54 ? O2 PLX 202 a 1 HETATM 33 C C5 PLX . . . HA 33 226.5 163.476 105.359 1 33.54 ? C5 PLX 202 a 1 HETATM 34 O O8 PLX . . . HA 33 226.776 164.256 106.524 1 33.54 ? O8 PLX 202 a 1 HETATM 35 C C24 PLX . . . HA 33 227.561 163.595 107.494 1 33.54 ? C24 PLX 202 a 1 HETATM 36 O O9 PLX . . . HA 33 227.377 162.223 107.388 1 33.54 ? O9 PLX 202 a 1 HETATM 37 C C25 PLX . . . HA 33 227.138 164.063 108.903 1 33.54 ? C25 PLX 202 a 1 HETATM 38 C C26 PLX . . . HA 33 227.924 165.33 109.374 1 33.54 ? C26 PLX 202 a 1 HETATM 39 C C27 PLX . . . HA 33 228.502 165.163 110.815 1 33.54 ? C27 PLX 202 a 1 HETATM 40 C C28 PLX . . . HA 33 230.05 165.402 110.865 1 33.54 ? C28 PLX 202 a 1 HETATM 41 C C29 PLX . . . HA 33 230.439 166.658 111.712 1 33.54 ? C29 PLX 202 a 1 HETATM 42 C C30 PLX . . . HA 33 231.788 166.449 112.501 1 33.54 ? C30 PLX 202 a 1 HETATM 43 C C31 PLX . . . HA 33 231.609 166.573 114.061 1 33.54 ? C31 PLX 202 a 1 HETATM 44 C C32 PLX . . . HA 33 230.422 165.689 114.616 1 33.54 ? C32 PLX 202 a 1 HETATM 45 C C33 PLX . . . HA 33 230.641 165.277 116.128 1 33.54 ? C33 PLX 202 a 1 HETATM 46 C C34 PLX . . . HA 33 230.519 163.717 116.357 1 33.54 ? C34 PLX 202 a 1 HETATM 47 C C35 PLX . . . HA 33 230.81 163.307 117.863 1 33.54 ? C35 PLX 202 a 1 HETATM 48 C C36 PLX . . . HA 33 231.948 162.233 117.985 1 33.54 ? C36 PLX 202 a 1 HETATM 49 C C37 PLX . . . HA 33 232.166 161.756 119.467 1 33.54 ? C37 PLX 202 a 1 HETATM 50 C C38 PLX . . . HA 33 232.616 162.923 120.404 1 33.54 ? C38 PLX 202 a 1 HETATM 51 C C39 PLX . . . HA 33 233.099 162.416 121.787 1 33.54 ? C39 PLX 202 a 1 HETATM 52 O O3 PLX . . . HA 33 223.813 161.259 101.308 1 33.54 ? O3 PLX 202 a 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 61 _model_server_stats.query_time_ms 474 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 52 #