data_7VYI
#
_model_server_result.job_id            LqE4Fw1wl_qp6RKbblvyJQ 
_model_server_result.datetime_utc      '2024-10-19 11:38:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vyi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"HA","auth_seq_id":202}' 
#
_entry.id    7VYI 
#
_exptl.entry_id    7VYI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              767.132 
_entity.id                          33 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VYI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VYI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 33 HA N N 
? 33 JA N N 
? 33 NA N N 
? 33 SA N N 
? 33 TA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C42 H89 N O8 P 1' 
_chem_comp.formula_weight    767.132 
_chem_comp.id                PLX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VYI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 101 101 PEE PEE . 
EA 30 PEE U 1 102 401 PEE PEE . 
FA 31 8Q1 X 1 201 201 8Q1 8Q1 . 
GA 32 CDL a 1 201 201 CDL CDL . 
HA 33 PLX a 1 202 101 PLX PLX . 
IA 30 PEE b 1 201 720 PEE PEE . 
JA 33 PLX g 1 201 705 PLX PLX . 
KA 32 CDL g 1 202 102 CDL CDL . 
LA 32 CDL i 1 401 401 CDL CDL . 
MA 30 PEE i 1 402 718 PEE PEE . 
NA 33 PLX j 1 201 203 PLX PLX . 
OA 32 CDL l 1 701 713 CDL CDL . 
PA 30 PEE l 1 702 719 PEE PEE . 
QA 30 PEE m 1 201 202 PEE PEE . 
RA 30 PEE r 1 501 202 PEE PEE . 
SA 33 PLX r 1 502 205 PLX PLX . 
TA 33 PLX r 1 503 201 PLX PLX . 
UA 32 CDL r 1 504 712 CDL CDL . 
VA 32 CDL r 1 505 714 CDL CDL . 
WA 34 UQ s 1 401 403 UQ UQ . 
XA 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 PLX . . . HA 33 238.414 174.114 107.402 1 33.54 ? C23 PLX 202 a 1 
HETATM 2 C C22 PLX . . . HA 33 236.913 173.704 107.31 1 33.54 ? C22 PLX 202 a 1 
HETATM 3 C C21 PLX . . . HA 33 235.963 174.944 107.224 1 33.54 ? C21 PLX 202 a 1 
HETATM 4 C C20 PLX . . . HA 33 234.469 174.54 106.991 1 33.54 ? C20 PLX 202 a 1 
HETATM 5 C C19 PLX . . . HA 33 233.962 173.505 108.049 1 33.54 ? C19 PLX 202 a 1 
HETATM 6 C C18 PLX . . . HA 33 232.511 172.986 107.732 1 33.54 ? C18 PLX 202 a 1 
HETATM 7 C C17 PLX . . . HA 33 231.949 172.063 108.883 1 33.54 ? C17 PLX 202 a 1 
HETATM 8 C C16 PLX . . . HA 33 230.886 171.036 108.363 1 33.54 ? C16 PLX 202 a 1 
HETATM 9 C C15 PLX . . . HA 33 230.244 170.203 109.536 1 33.54 ? C15 PLX 202 a 1 
HETATM 10 C C14 PLX . . . HA 33 228.7 170.436 109.66 1 33.54 ? C14 PLX 202 a 1 
HETATM 11 C C13 PLX . . . HA 33 227.868 169.268 109.009 1 33.54 ? C13 PLX 202 a 1 
HETATM 12 C C12 PLX . . . HA 33 226.332 169.568 108.988 1 33.54 ? C12 PLX 202 a 1 
HETATM 13 C C11 PLX . . . HA 33 225.813 169.902 107.549 1 33.54 ? C11 PLX 202 a 1 
HETATM 14 C C10 PLX . . . HA 33 225.14 168.68 106.843 1 33.54 ? C10 PLX 202 a 1 
HETATM 15 C C9 PLX . . . HA 33 224.85 167.485 107.822 1 33.54 ? C9 PLX 202 a 1 
HETATM 16 C C8 PLX . . . HA 33 223.699 166.542 107.305 1 33.54 ? C8 PLX 202 a 1 
HETATM 17 C C7 PLX . . . HA 33 223.455 166.682 105.752 1 33.54 ? C7 PLX 202 a 1 
HETATM 18 C C6 PLX . . . HA 33 223.369 165.302 105.047 1 33.54 ? C6 PLX 202 a 1 
HETATM 19 O O7 PLX . . . HA 33 222.575 165.408 103.927 1 33.54 ? O7 PLX 202 a 1 
HETATM 20 O O6 PLX . . . HA 33 224.67 164.883 104.665 1 33.54 ? O6 PLX 202 a 1 
HETATM 21 C C4 PLX . . . HA 33 224.99 163.574 105.064 1 33.54 ? C4 PLX 202 a 1 
HETATM 22 C C3 PLX . . . HA 33 224.614 162.594 103.942 1 33.54 ? C3 PLX 202 a 1 
HETATM 23 O O4 PLX . . . HA 33 224.41 163.351 102.744 1 33.54 ? O4 PLX 202 a 1 
HETATM 24 P P1 PLX . . . HA 33 223.43 162.705 101.551 1 33.54 ? P1 PLX 202 a 1 
HETATM 25 O O1 PLX . . . HA 33 223.633 163.58 100.143 1 33.54 ? O1 PLX 202 a 1 
HETATM 26 C C2 PLX . . . HA 33 223.452 162.908 98.896 1 33.54 ? C2 PLX 202 a 1 
HETATM 27 C C1 PLX . . . HA 33 224.288 163.672 97.813 1 33.54 ? C1 PLX 202 a 1 
HETATM 28 N N1 PLX . . . HA 33 225.629 163.027 97.613 1 33.54 ? N1 PLX 202 a 1 
HETATM 29 C C1C PLX . . . HA 33 225.395 161.789 96.844 1 33.54 ? C1C PLX 202 a 1 
HETATM 30 C C1B PLX . . . HA 33 226.45 163.993 96.824 1 33.54 ? C1B PLX 202 a 1 
HETATM 31 C C1A PLX . . . HA 33 226.44 162.644 98.796 1 33.54 ? C1A PLX 202 a 1 
HETATM 32 O O2 PLX . . . HA 33 221.982 162.779 101.986 1 33.54 ? O2 PLX 202 a 1 
HETATM 33 C C5 PLX . . . HA 33 226.5 163.476 105.359 1 33.54 ? C5 PLX 202 a 1 
HETATM 34 O O8 PLX . . . HA 33 226.776 164.256 106.524 1 33.54 ? O8 PLX 202 a 1 
HETATM 35 C C24 PLX . . . HA 33 227.561 163.595 107.494 1 33.54 ? C24 PLX 202 a 1 
HETATM 36 O O9 PLX . . . HA 33 227.377 162.223 107.388 1 33.54 ? O9 PLX 202 a 1 
HETATM 37 C C25 PLX . . . HA 33 227.138 164.063 108.903 1 33.54 ? C25 PLX 202 a 1 
HETATM 38 C C26 PLX . . . HA 33 227.924 165.33 109.374 1 33.54 ? C26 PLX 202 a 1 
HETATM 39 C C27 PLX . . . HA 33 228.502 165.163 110.815 1 33.54 ? C27 PLX 202 a 1 
HETATM 40 C C28 PLX . . . HA 33 230.05 165.402 110.865 1 33.54 ? C28 PLX 202 a 1 
HETATM 41 C C29 PLX . . . HA 33 230.439 166.658 111.712 1 33.54 ? C29 PLX 202 a 1 
HETATM 42 C C30 PLX . . . HA 33 231.788 166.449 112.501 1 33.54 ? C30 PLX 202 a 1 
HETATM 43 C C31 PLX . . . HA 33 231.609 166.573 114.061 1 33.54 ? C31 PLX 202 a 1 
HETATM 44 C C32 PLX . . . HA 33 230.422 165.689 114.616 1 33.54 ? C32 PLX 202 a 1 
HETATM 45 C C33 PLX . . . HA 33 230.641 165.277 116.128 1 33.54 ? C33 PLX 202 a 1 
HETATM 46 C C34 PLX . . . HA 33 230.519 163.717 116.357 1 33.54 ? C34 PLX 202 a 1 
HETATM 47 C C35 PLX . . . HA 33 230.81 163.307 117.863 1 33.54 ? C35 PLX 202 a 1 
HETATM 48 C C36 PLX . . . HA 33 231.948 162.233 117.985 1 33.54 ? C36 PLX 202 a 1 
HETATM 49 C C37 PLX . . . HA 33 232.166 161.756 119.467 1 33.54 ? C37 PLX 202 a 1 
HETATM 50 C C38 PLX . . . HA 33 232.616 162.923 120.404 1 33.54 ? C38 PLX 202 a 1 
HETATM 51 C C39 PLX . . . HA 33 233.099 162.416 121.787 1 33.54 ? C39 PLX 202 a 1 
HETATM 52 O O3 PLX . . . HA 33 223.813 161.259 101.308 1 33.54 ? O3 PLX 202 a 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    58 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           52 
#