data_7VYI
#
_model_server_result.job_id            fnUebfQbhH0QJihAviaHgA 
_model_server_result.datetime_utc      '2024-12-21 16:57:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vyi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KA","auth_seq_id":202}' 
#
_entry.id    7VYI 
#
_exptl.entry_id    7VYI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          32 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VYI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VYI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 32 GA N N 
? 32 KA N N 
? 32 LA N N 
? 32 OA N N 
? 32 UA N N 
? 32 VA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VYI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 101 101 PEE PEE . 
EA 30 PEE U 1 102 401 PEE PEE . 
FA 31 8Q1 X 1 201 201 8Q1 8Q1 . 
GA 32 CDL a 1 201 201 CDL CDL . 
HA 33 PLX a 1 202 101 PLX PLX . 
IA 30 PEE b 1 201 720 PEE PEE . 
JA 33 PLX g 1 201 705 PLX PLX . 
KA 32 CDL g 1 202 102 CDL CDL . 
LA 32 CDL i 1 401 401 CDL CDL . 
MA 30 PEE i 1 402 718 PEE PEE . 
NA 33 PLX j 1 201 203 PLX PLX . 
OA 32 CDL l 1 701 713 CDL CDL . 
PA 30 PEE l 1 702 719 PEE PEE . 
QA 30 PEE m 1 201 202 PEE PEE . 
RA 30 PEE r 1 501 202 PEE PEE . 
SA 33 PLX r 1 502 205 PLX PLX . 
TA 33 PLX r 1 503 201 PLX PLX . 
UA 32 CDL r 1 504 712 CDL CDL . 
VA 32 CDL r 1 505 714 CDL CDL . 
WA 34 UQ s 1 401 403 UQ UQ . 
XA 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . KA 32 208.942 156.25 102.08 1 29.63 ? C1 CDL 202 g 1 
HETATM 2 O O1 CDL . . . KA 32 209.952 157.162 101.763 1 29.63 ? O1 CDL 202 g 1 
HETATM 3 C CA2 CDL . . . KA 32 209.182 154.959 101.257 1 29.63 ? CA2 CDL 202 g 1 
HETATM 4 O OA2 CDL . . . KA 32 209.395 153.873 102.148 1 29.63 ? OA2 CDL 202 g 1 
HETATM 5 P PA1 CDL . . . KA 32 209.473 152.35 101.499 1 29.63 ? PA1 CDL 202 g 1 
HETATM 6 O OA3 CDL . . . KA 32 208.554 152.271 100.306 1 29.63 ? OA3 CDL 202 g 1 
HETATM 7 O OA4 CDL . . . KA 32 210.879 152.062 101.064 1 29.63 ? OA4 CDL 202 g 1 
HETATM 8 O OA5 CDL . . . KA 32 209.007 151.231 102.636 1 29.63 ? OA5 CDL 202 g 1 
HETATM 9 C CA3 CDL . . . KA 32 209.997 150.375 103.183 1 29.63 ? CA3 CDL 202 g 1 
HETATM 10 C CA4 CDL . . . KA 32 209.84 150.353 104.696 1 29.63 ? CA4 CDL 202 g 1 
HETATM 11 O OA6 CDL . . . KA 32 210.01 151.649 105.199 1 29.63 ? OA6 CDL 202 g 1 
HETATM 12 C CA5 CDL . . . KA 32 209.503 151.833 106.514 1 29.63 ? CA5 CDL 202 g 1 
HETATM 13 O OA7 CDL . . . KA 32 208.669 151.098 106.942 1 29.63 ? OA7 CDL 202 g 1 
HETATM 14 C C11 CDL . . . KA 32 210.047 152.997 107.399 1 29.63 ? C11 CDL 202 g 1 
HETATM 15 C C12 CDL . . . KA 32 209.071 154.177 107.44 1 29.63 ? C12 CDL 202 g 1 
HETATM 16 C C13 CDL . . . KA 32 208.718 154.671 106.039 1 29.63 ? C13 CDL 202 g 1 
HETATM 17 C C14 CDL . . . KA 32 208.345 156.165 106.022 1 29.63 ? C14 CDL 202 g 1 
HETATM 18 C C15 CDL . . . KA 32 206.995 156.416 105.294 1 29.63 ? C15 CDL 202 g 1 
HETATM 19 C C16 CDL . . . KA 32 206.17 157.547 105.956 1 29.63 ? C16 CDL 202 g 1 
HETATM 20 C C17 CDL . . . KA 32 206.535 158.958 105.403 1 29.63 ? C17 CDL 202 g 1 
HETATM 21 C C18 CDL . . . KA 32 205.417 159.997 105.672 1 29.63 ? C18 CDL 202 g 1 
HETATM 22 C C19 CDL . . . KA 32 205.118 160.176 107.188 1 29.63 ? C19 CDL 202 g 1 
HETATM 23 C C20 CDL . . . KA 32 206.395 160.451 108.019 1 29.63 ? C20 CDL 202 g 1 
HETATM 24 C C21 CDL . . . KA 32 206.181 160.189 109.533 1 29.63 ? C21 CDL 202 g 1 
HETATM 25 C C22 CDL . . . KA 32 207.497 159.77 110.246 1 29.63 ? C22 CDL 202 g 1 
HETATM 26 C C23 CDL . . . KA 32 207.278 159.433 111.738 1 29.63 ? C23 CDL 202 g 1 
HETATM 27 C C24 CDL . . . KA 32 208.37 158.479 112.288 1 29.63 ? C24 CDL 202 g 1 
HETATM 28 C C25 CDL . . . KA 32 208.481 157.191 111.454 1 29.63 ? C25 CDL 202 g 1 
HETATM 29 C C26 CDL . . . KA 32 209.52 156.203 112.03 1 29.63 ? C26 CDL 202 g 1 
HETATM 30 C C27 CDL . . . KA 32 209.746 154.997 111.11 1 29.63 ? C27 CDL 202 g 1 
HETATM 31 C CA6 CDL . . . KA 32 210.912 149.429 105.305 1 29.63 ? CA6 CDL 202 g 1 
HETATM 32 O OA8 CDL . . . KA 32 210.306 148.643 106.313 1 29.63 ? OA8 CDL 202 g 1 
HETATM 33 C CA7 CDL . . . KA 32 211.229 148.105 107.263 1 29.63 ? CA7 CDL 202 g 1 
HETATM 34 O OA9 CDL . . . KA 32 212.392 148.244 107.101 1 29.63 ? OA9 CDL 202 g 1 
HETATM 35 C C31 CDL . . . KA 32 210.709 147.336 108.493 1 29.63 ? C31 CDL 202 g 1 
HETATM 36 C C32 CDL . . . KA 32 211.572 147.558 109.734 1 29.63 ? C32 CDL 202 g 1 
HETATM 37 C C33 CDL . . . KA 32 211.596 149.027 110.18 1 29.63 ? C33 CDL 202 g 1 
HETATM 38 C CB2 CDL . . . KA 32 207.563 156.915 101.739 1 29.63 ? CB2 CDL 202 g 1 
HETATM 39 O OB2 CDL . . . KA 32 206.67 155.89 101.32 1 29.63 ? OB2 CDL 202 g 1 
HETATM 40 P PB2 CDL . . . KA 32 205.083 156.307 100.964 1 29.63 ? PB2 CDL 202 g 1 
HETATM 41 O OB3 CDL . . . KA 32 205.019 157.78 100.607 1 29.63 ? OB3 CDL 202 g 1 
HETATM 42 O OB4 CDL . . . KA 32 204.603 155.482 99.793 1 29.63 ? OB4 CDL 202 g 1 
HETATM 43 O OB5 CDL . . . KA 32 204.103 156.014 102.292 1 29.63 ? OB5 CDL 202 g 1 
HETATM 44 C CB3 CDL . . . KA 32 203.801 157.103 103.155 1 29.63 ? CB3 CDL 202 g 1 
HETATM 45 C CB4 CDL . . . KA 32 202.276 157.234 103.29 1 29.63 ? CB4 CDL 202 g 1 
HETATM 46 O OB6 CDL . . . KA 32 201.978 158.012 104.425 1 29.63 ? OB6 CDL 202 g 1 
HETATM 47 C CB5 CDL . . . KA 32 201.74 159.385 104.136 1 29.63 ? CB5 CDL 202 g 1 
HETATM 48 O OB7 CDL . . . KA 32 201.532 159.727 103.021 1 29.63 ? OB7 CDL 202 g 1 
HETATM 49 C C51 CDL . . . KA 32 201.761 160.431 105.269 1 29.63 ? C51 CDL 202 g 1 
HETATM 50 C C52 CDL . . . KA 32 200.937 159.988 106.49 1 29.63 ? C52 CDL 202 g 1 
HETATM 51 C C53 CDL . . . KA 32 201.353 160.724 107.773 1 29.63 ? C53 CDL 202 g 1 
HETATM 52 C C54 CDL . . . KA 32 201.057 159.889 109.036 1 29.63 ? C54 CDL 202 g 1 
HETATM 53 C C55 CDL . . . KA 32 199.563 159.88 109.397 1 29.63 ? C55 CDL 202 g 1 
HETATM 54 C C56 CDL . . . KA 32 199.071 161.254 109.924 1 29.63 ? C56 CDL 202 g 1 
HETATM 55 C C57 CDL . . . KA 32 199.185 161.361 111.458 1 29.63 ? C57 CDL 202 g 1 
HETATM 56 C C58 CDL . . . KA 32 200.078 162.548 111.897 1 29.63 ? C58 CDL 202 g 1 
HETATM 57 C C59 CDL . . . KA 32 200.659 162.356 113.32 1 29.63 ? C59 CDL 202 g 1 
HETATM 58 C C60 CDL . . . KA 32 201.558 161.111 113.424 1 29.63 ? C60 CDL 202 g 1 
HETATM 59 C C61 CDL . . . KA 32 201.5 160.464 114.835 1 29.63 ? C61 CDL 202 g 1 
HETATM 60 C C62 CDL . . . KA 32 201.009 159 114.797 1 29.63 ? C62 CDL 202 g 1 
HETATM 61 C C63 CDL . . . KA 32 200.012 158.69 115.924 1 29.63 ? C63 CDL 202 g 1 
HETATM 62 C C64 CDL . . . KA 32 200.537 159.114 117.305 1 29.63 ? C64 CDL 202 g 1 
HETATM 63 C CB6 CDL . . . KA 32 201.65 155.853 103.442 1 29.63 ? CB6 CDL 202 g 1 
HETATM 64 O OB8 CDL . . . KA 32 202.254 155.197 104.553 1 29.63 ? OB8 CDL 202 g 1 
HETATM 65 C CB7 CDL . . . KA 32 201.349 154.898 105.602 1 29.63 ? CB7 CDL 202 g 1 
HETATM 66 O OB9 CDL . . . KA 32 200.183 154.871 105.387 1 29.63 ? OB9 CDL 202 g 1 
HETATM 67 C C71 CDL . . . KA 32 201.877 154.588 107.022 1 29.63 ? C71 CDL 202 g 1 
HETATM 68 C C72 CDL . . . KA 32 201.697 155.759 107.996 1 29.63 ? C72 CDL 202 g 1 
HETATM 69 C C73 CDL . . . KA 32 202.916 155.951 108.914 1 29.63 ? C73 CDL 202 g 1 
HETATM 70 C C74 CDL . . . KA 32 204.229 155.511 108.247 1 29.63 ? C74 CDL 202 g 1 
HETATM 71 C C75 CDL . . . KA 32 205.279 155.002 109.271 1 29.63 ? C75 CDL 202 g 1 
HETATM 72 C C76 CDL . . . KA 32 205.81 153.59 108.908 1 29.63 ? C76 CDL 202 g 1 
HETATM 73 C C77 CDL . . . KA 32 206.52 152.889 110.104 1 29.63 ? C77 CDL 202 g 1 
HETATM 74 C C78 CDL . . . KA 32 205.921 153.298 111.456 1 29.63 ? C78 CDL 202 g 1 
HETATM 75 C C79 CDL . . . KA 32 206.823 152.908 112.646 1 29.63 ? C79 CDL 202 g 1 
HETATM 76 C C80 CDL . . . KA 32 206.315 153.534 113.969 1 29.63 ? C80 CDL 202 g 1 
HETATM 77 C C81 CDL . . . KA 32 206.246 155.059 113.894 1 29.63 ? C81 CDL 202 g 1 
HETATM 78 C C82 CDL . . . KA 32 205.381 155.666 115.036 1 29.63 ? C82 CDL 202 g 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    50 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           78 
#