data_7VYI # _model_server_result.job_id R2QmELfQKGCWER0kJNHpsg _model_server_result.datetime_utc '2024-12-21 16:37:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":401}' # _entry.id 7VYI # _exptl.entry_id 7VYI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 32 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 32 GA N N ? 32 KA N N ? 32 LA N N ? 32 OA N N ? 32 UA N N ? 32 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VYI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE U 1 101 101 PEE PEE . EA 30 PEE U 1 102 401 PEE PEE . FA 31 8Q1 X 1 201 201 8Q1 8Q1 . GA 32 CDL a 1 201 201 CDL CDL . HA 33 PLX a 1 202 101 PLX PLX . IA 30 PEE b 1 201 720 PEE PEE . JA 33 PLX g 1 201 705 PLX PLX . KA 32 CDL g 1 202 102 CDL CDL . LA 32 CDL i 1 401 401 CDL CDL . MA 30 PEE i 1 402 718 PEE PEE . NA 33 PLX j 1 201 203 PLX PLX . OA 32 CDL l 1 701 713 CDL CDL . PA 30 PEE l 1 702 719 PEE PEE . QA 30 PEE m 1 201 202 PEE PEE . RA 30 PEE r 1 501 202 PEE PEE . SA 33 PLX r 1 502 205 PLX PLX . TA 33 PLX r 1 503 201 PLX PLX . UA 32 CDL r 1 504 712 CDL CDL . VA 32 CDL r 1 505 714 CDL CDL . WA 34 UQ s 1 401 403 UQ UQ . XA 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . LA 32 180.886 138.934 133.507 1 42.63 ? C1 CDL 401 i 1 HETATM 2 O O1 CDL . . . LA 32 179.743 139.616 133.928 1 42.63 ? O1 CDL 401 i 1 HETATM 3 C CA2 CDL . . . LA 32 182.112 139.847 133.772 1 42.63 ? CA2 CDL 401 i 1 HETATM 4 O OA2 CDL . . . LA 32 182.948 139.819 132.623 1 42.63 ? OA2 CDL 401 i 1 HETATM 5 P PA1 CDL . . . LA 32 184.183 140.921 132.519 1 42.63 ? PA1 CDL 401 i 1 HETATM 6 O OA3 CDL . . . LA 32 183.699 142.266 133.001 1 42.63 ? OA3 CDL 401 i 1 HETATM 7 O OA4 CDL . . . LA 32 185.332 140.468 133.369 1 42.63 ? OA4 CDL 401 i 1 HETATM 8 O OA5 CDL . . . LA 32 184.686 141.048 130.941 1 42.63 ? OA5 CDL 401 i 1 HETATM 9 C CA3 CDL . . . LA 32 184.372 142.232 130.224 1 42.63 ? CA3 CDL 401 i 1 HETATM 10 C CA4 CDL . . . LA 32 183.6 141.829 128.976 1 42.63 ? CA4 CDL 401 i 1 HETATM 11 O OA6 CDL . . . LA 32 183.987 142.634 127.894 1 42.63 ? OA6 CDL 401 i 1 HETATM 12 C CA5 CDL . . . LA 32 184.476 141.887 126.788 1 42.63 ? CA5 CDL 401 i 1 HETATM 13 O OA7 CDL . . . LA 32 184.464 140.695 126.824 1 42.63 ? OA7 CDL 401 i 1 HETATM 14 C C11 CDL . . . LA 32 185.03 142.619 125.527 1 42.63 ? C11 CDL 401 i 1 HETATM 15 C C12 CDL . . . LA 32 184.55 141.975 124.222 1 42.63 ? C12 CDL 401 i 1 HETATM 16 C C13 CDL . . . LA 32 185.321 142.493 123.011 1 42.63 ? C13 CDL 401 i 1 HETATM 17 C C14 CDL . . . LA 32 184.389 142.976 121.884 1 42.63 ? C14 CDL 401 i 1 HETATM 18 C C15 CDL . . . LA 32 183.776 141.796 121.077 1 42.63 ? C15 CDL 401 i 1 HETATM 19 C C16 CDL . . . LA 32 184.812 141.062 120.187 1 42.63 ? C16 CDL 401 i 1 HETATM 20 C C17 CDL . . . LA 32 185.744 142.045 119.414 1 42.63 ? C17 CDL 401 i 1 HETATM 21 C C18 CDL . . . LA 32 185.078 142.61 118.133 1 42.63 ? C18 CDL 401 i 1 HETATM 22 C CA6 CDL . . . LA 32 182.087 141.982 129.228 1 42.63 ? CA6 CDL 401 i 1 HETATM 23 O OA8 CDL . . . LA 32 181.592 140.741 129.691 1 42.63 ? OA8 CDL 401 i 1 HETATM 24 C CA7 CDL . . . LA 32 181.036 139.918 128.662 1 42.63 ? CA7 CDL 401 i 1 HETATM 25 O OA9 CDL . . . LA 32 181.629 138.972 128.275 1 42.63 ? OA9 CDL 401 i 1 HETATM 26 C C31 CDL . . . LA 32 179.66 140.261 128.061 1 42.63 ? C31 CDL 401 i 1 HETATM 27 C C32 CDL . . . LA 32 179.348 139.419 126.826 1 42.63 ? C32 CDL 401 i 1 HETATM 28 C C33 CDL . . . LA 32 179.803 140.11 125.533 1 42.63 ? C33 CDL 401 i 1 HETATM 29 C C34 CDL . . . LA 32 179.137 141.494 125.355 1 42.63 ? C34 CDL 401 i 1 HETATM 30 C C35 CDL . . . LA 32 180.163 142.601 124.997 1 42.63 ? C35 CDL 401 i 1 HETATM 31 C C36 CDL . . . LA 32 180.207 142.886 123.478 1 42.63 ? C36 CDL 401 i 1 HETATM 32 C C37 CDL . . . LA 32 181.089 144.098 123.14 1 42.63 ? C37 CDL 401 i 1 HETATM 33 C C38 CDL . . . LA 32 180.434 145.028 122.112 1 42.63 ? C38 CDL 401 i 1 HETATM 34 C C39 CDL . . . LA 32 180.281 144.365 120.73 1 42.63 ? C39 CDL 401 i 1 HETATM 35 C C40 CDL . . . LA 32 181.124 145.068 119.643 1 42.63 ? C40 CDL 401 i 1 HETATM 36 C C41 CDL . . . LA 32 180.475 144.945 118.221 1 42.63 ? C41 CDL 401 i 1 HETATM 37 C C42 CDL . . . LA 32 181.539 144.897 117.091 1 42.63 ? C42 CDL 401 i 1 HETATM 38 C CB2 CDL . . . LA 32 180.948 137.57 134.278 1 42.63 ? CB2 CDL 401 i 1 HETATM 39 O OB2 CDL . . . LA 32 179.711 136.897 134.075 1 42.63 ? OB2 CDL 401 i 1 HETATM 40 P PB2 CDL . . . LA 32 179.669 135.225 134.222 1 42.63 ? PB2 CDL 401 i 1 HETATM 41 O OB3 CDL . . . LA 32 178.415 134.809 134.967 1 42.63 ? OB3 CDL 401 i 1 HETATM 42 O OB4 CDL . . . LA 32 180.884 134.766 134.992 1 42.63 ? OB4 CDL 401 i 1 HETATM 43 O OB5 CDL . . . LA 32 179.671 134.526 132.697 1 42.63 ? OB5 CDL 401 i 1 HETATM 44 C CB3 CDL . . . LA 32 180.247 133.235 132.541 1 42.63 ? CB3 CDL 401 i 1 HETATM 45 C CB4 CDL . . . LA 32 180.96 133.167 131.182 1 42.63 ? CB4 CDL 401 i 1 HETATM 46 O OB6 CDL . . . LA 32 180.073 133.566 130.163 1 42.63 ? OB6 CDL 401 i 1 HETATM 47 C CB5 CDL . . . LA 32 180.261 134.906 129.718 1 42.63 ? CB5 CDL 401 i 1 HETATM 48 O OB7 CDL . . . LA 32 181 135.628 130.3 1 42.63 ? OB7 CDL 401 i 1 HETATM 49 C C51 CDL . . . LA 32 179.501 135.421 128.477 1 42.63 ? C51 CDL 401 i 1 HETATM 50 C C52 CDL . . . LA 32 180.076 134.853 127.169 1 42.63 ? C52 CDL 401 i 1 HETATM 51 C C53 CDL . . . LA 32 179.082 134.944 126.001 1 42.63 ? C53 CDL 401 i 1 HETATM 52 C C54 CDL . . . LA 32 179.68 134.389 124.691 1 42.63 ? C54 CDL 401 i 1 HETATM 53 C C55 CDL . . . LA 32 180.03 135.501 123.69 1 42.63 ? C55 CDL 401 i 1 HETATM 54 C C56 CDL . . . LA 32 180.47 134.937 122.313 1 42.63 ? C56 CDL 401 i 1 HETATM 55 C CB6 CDL . . . LA 32 181.419 131.735 130.924 1 42.63 ? CB6 CDL 401 i 1 HETATM 56 O OB8 CDL . . . LA 32 180.337 131.022 130.332 1 42.63 ? OB8 CDL 401 i 1 HETATM 57 C CB7 CDL . . . LA 32 180.354 129.627 130.581 1 42.63 ? CB7 CDL 401 i 1 HETATM 58 O OB9 CDL . . . LA 32 180.359 129.222 131.696 1 42.63 ? OB9 CDL 401 i 1 HETATM 59 C C71 CDL . . . LA 32 180.363 128.629 129.398 1 42.63 ? C71 CDL 401 i 1 HETATM 60 C C72 CDL . . . LA 32 179.353 127.489 129.59 1 42.63 ? C72 CDL 401 i 1 HETATM 61 C C73 CDL . . . LA 32 178.547 127.196 128.314 1 42.63 ? C73 CDL 401 i 1 HETATM 62 C C74 CDL . . . LA 32 177.067 127.587 128.456 1 42.63 ? C74 CDL 401 i 1 HETATM 63 C C75 CDL . . . LA 32 176.15 126.787 127.491 1 42.63 ? C75 CDL 401 i 1 HETATM 64 C C76 CDL . . . LA 32 175.049 127.67 126.848 1 42.63 ? C76 CDL 401 i 1 HETATM 65 C C77 CDL . . . LA 32 174.503 127.059 125.524 1 42.63 ? C77 CDL 401 i 1 HETATM 66 C C78 CDL . . . LA 32 173 126.757 125.598 1 42.63 ? C78 CDL 401 i 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 73 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 66 #