data_7VYI # _model_server_result.job_id piDXW6hrVqgPjyo-Jwb0QQ _model_server_result.datetime_utc '2024-10-19 11:33:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"MA","auth_seq_id":402}' # _entry.id 7VYI # _exptl.entry_id 7VYI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 EA N N ? 30 IA N N ? 30 MA N N ? 30 PA N N ? 30 QA N N ? 30 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 7VYI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE U 1 101 101 PEE PEE . EA 30 PEE U 1 102 401 PEE PEE . FA 31 8Q1 X 1 201 201 8Q1 8Q1 . GA 32 CDL a 1 201 201 CDL CDL . HA 33 PLX a 1 202 101 PLX PLX . IA 30 PEE b 1 201 720 PEE PEE . JA 33 PLX g 1 201 705 PLX PLX . KA 32 CDL g 1 202 102 CDL CDL . LA 32 CDL i 1 401 401 CDL CDL . MA 30 PEE i 1 402 718 PEE PEE . NA 33 PLX j 1 201 203 PLX PLX . OA 32 CDL l 1 701 713 CDL CDL . PA 30 PEE l 1 702 719 PEE PEE . QA 30 PEE m 1 201 202 PEE PEE . RA 30 PEE r 1 501 202 PEE PEE . SA 33 PLX r 1 502 205 PLX PLX . TA 33 PLX r 1 503 201 PLX PLX . UA 32 CDL r 1 504 712 CDL CDL . VA 32 CDL r 1 505 714 CDL CDL . WA 34 UQ s 1 401 403 UQ UQ . XA 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . MA 30 181.432 181.094 117.894 1 32.15 ? C27 PEE 402 i 1 HETATM 2 C C26 PEE . . . MA 30 181.534 181.17 119.418 1 32.15 ? C26 PEE 402 i 1 HETATM 3 C C25 PEE . . . MA 30 182.798 180.501 119.944 1 32.15 ? C25 PEE 402 i 1 HETATM 4 C C24 PEE . . . MA 30 182.52 179.137 120.571 1 32.15 ? C24 PEE 402 i 1 HETATM 5 C C23 PEE . . . MA 30 183.689 178.655 121.428 1 32.15 ? C23 PEE 402 i 1 HETATM 6 C C22 PEE . . . MA 30 184.144 179.714 122.432 1 32.15 ? C22 PEE 402 i 1 HETATM 7 C C21 PEE . . . MA 30 185.563 179.455 122.948 1 32.15 ? C21 PEE 402 i 1 HETATM 8 C C20 PEE . . . MA 30 186.245 180.737 123.429 1 32.15 ? C20 PEE 402 i 1 HETATM 9 C C19 PEE . . . MA 30 186.684 180.647 124.891 1 32.15 ? C19 PEE 402 i 1 HETATM 10 C C18 PEE . . . MA 30 185.576 180.103 125.793 1 32.15 ? C18 PEE 402 i 1 HETATM 11 C C17 PEE . . . MA 30 186.057 178.93 126.647 1 32.15 ? C17 PEE 402 i 1 HETATM 12 C C16 PEE . . . MA 30 186.766 179.391 127.919 1 32.15 ? C16 PEE 402 i 1 HETATM 13 C C15 PEE . . . MA 30 186.901 178.258 128.937 1 32.15 ? C15 PEE 402 i 1 HETATM 14 C C14 PEE . . . MA 30 186.996 178.775 130.375 1 32.15 ? C14 PEE 402 i 1 HETATM 15 C C13 PEE . . . MA 30 187.14 177.63 131.383 1 32.15 ? C13 PEE 402 i 1 HETATM 16 C C12 PEE . . . MA 30 186.797 178.057 132.816 1 32.15 ? C12 PEE 402 i 1 HETATM 17 C C11 PEE . . . MA 30 185.304 178.354 132.999 1 32.15 ? C11 PEE 402 i 1 HETATM 18 C C10 PEE . . . MA 30 184.791 177.876 134.364 1 32.15 ? C10 PEE 402 i 1 HETATM 19 O O4 PEE . . . MA 30 185.544 177.415 135.151 1 32.15 ? O4 PEE 402 i 1 HETATM 20 O O2 PEE . . . MA 30 183.428 177.98 134.678 1 32.15 ? O2 PEE 402 i 1 HETATM 21 C C2 PEE . . . MA 30 182.74 176.762 134.6 1 32.15 ? C2 PEE 402 i 1 HETATM 22 C C1 PEE . . . MA 30 182.411 176.267 136.007 1 32.15 ? C1 PEE 402 i 1 HETATM 23 O O3P PEE . . . MA 30 183.565 175.674 136.545 1 32.15 ? O3P PEE 402 i 1 HETATM 24 P P PEE . . . MA 30 183.681 174.024 136.55 1 32.15 ? P PEE 402 i 1 HETATM 25 O O2P PEE . . . MA 30 182.814 173.45 135.453 1 32.15 ? O2P PEE 402 i 1 HETATM 26 O O1P PEE . . . MA 30 185.118 173.622 136.32 1 32.15 ? O1P PEE 402 i 1 HETATM 27 O O4P PEE . . . MA 30 183.174 173.444 138.013 1 32.15 ? O4P PEE 402 i 1 HETATM 28 C C4 PEE . . . MA 30 183.932 173.75 139.155 1 32.15 ? C4 PEE 402 i 1 HETATM 29 C C5 PEE . . . MA 30 182.972 174.206 140.256 1 32.15 ? C5 PEE 402 i 1 HETATM 30 N N PEE . . . MA 30 182.131 173.102 140.684 1 32.15 ? N PEE 402 i 1 HETATM 31 C C3 PEE . . . MA 30 181.452 176.961 133.806 1 32.15 ? C3 PEE 402 i 1 HETATM 32 O O3 PEE . . . MA 30 181.283 175.864 132.953 1 32.15 ? O3 PEE 402 i 1 HETATM 33 C C30 PEE . . . MA 30 181.738 176.07 131.644 1 32.15 ? C30 PEE 402 i 1 HETATM 34 O O5 PEE . . . MA 30 182.438 176.992 131.39 1 32.15 ? O5 PEE 402 i 1 HETATM 35 C C31 PEE . . . MA 30 181.326 175.103 130.534 1 32.15 ? C31 PEE 402 i 1 HETATM 36 C C32 PEE . . . MA 30 181.416 175.738 129.145 1 32.15 ? C32 PEE 402 i 1 HETATM 37 C C33 PEE . . . MA 30 182.759 175.479 128.459 1 32.15 ? C33 PEE 402 i 1 HETATM 38 C C34 PEE . . . MA 30 182.592 175.256 126.954 1 32.15 ? C34 PEE 402 i 1 HETATM 39 C C35 PEE . . . MA 30 183.772 175.804 126.147 1 32.15 ? C35 PEE 402 i 1 HETATM 40 C C36 PEE . . . MA 30 183.625 175.525 124.649 1 32.15 ? C36 PEE 402 i 1 HETATM 41 C C37 PEE . . . MA 30 182.495 176.337 124.013 1 32.15 ? C37 PEE 402 i 1 HETATM 42 C C38 PEE . . . MA 30 181.409 175.445 123.412 1 32.15 ? C38 PEE 402 i 1 HETATM 43 C C39 PEE . . . MA 30 180.48 176.208 122.473 1 32.15 ? C39 PEE 402 i 1 HETATM 44 C C40 PEE . . . MA 30 179.094 175.576 122.397 1 32.15 ? C40 PEE 402 i 1 HETATM 45 C C41 PEE . . . MA 30 178.229 176.193 121.305 1 32.15 ? C41 PEE 402 i 1 HETATM 46 C C42 PEE . . . MA 30 176.768 175.783 121.43 1 32.15 ? C42 PEE 402 i 1 HETATM 47 C C43 PEE . . . MA 30 175.949 176.171 120.203 1 32.15 ? C43 PEE 402 i 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 47 #