data_7VYI
#
_model_server_result.job_id            ubVTfwsHMum1oSAcuB-44Q 
_model_server_result.datetime_utc      '2024-12-21 16:59:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vyi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"RA","auth_seq_id":501}' 
#
_entry.id    7VYI 
#
_exptl.entry_id    7VYI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          30 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VYI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VYI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 30 DA N N 
? 30 EA N N 
? 30 IA N N 
? 30 MA N N 
? 30 PA N N 
? 30 QA N N 
? 30 RA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
_atom_sites.entry_id                     7VYI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 101 101 PEE PEE . 
EA 30 PEE U 1 102 401 PEE PEE . 
FA 31 8Q1 X 1 201 201 8Q1 8Q1 . 
GA 32 CDL a 1 201 201 CDL CDL . 
HA 33 PLX a 1 202 101 PLX PLX . 
IA 30 PEE b 1 201 720 PEE PEE . 
JA 33 PLX g 1 201 705 PLX PLX . 
KA 32 CDL g 1 202 102 CDL CDL . 
LA 32 CDL i 1 401 401 CDL CDL . 
MA 30 PEE i 1 402 718 PEE PEE . 
NA 33 PLX j 1 201 203 PLX PLX . 
OA 32 CDL l 1 701 713 CDL CDL . 
PA 30 PEE l 1 702 719 PEE PEE . 
QA 30 PEE m 1 201 202 PEE PEE . 
RA 30 PEE r 1 501 202 PEE PEE . 
SA 33 PLX r 1 502 205 PLX PLX . 
TA 33 PLX r 1 503 201 PLX PLX . 
UA 32 CDL r 1 504 712 CDL CDL . 
VA 32 CDL r 1 505 714 CDL CDL . 
WA 34 UQ s 1 401 403 UQ UQ . 
XA 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C27 PEE . . . RA 30 188.03 182.667 118.663 1 26.91 ? C27 PEE 501 r 1 
HETATM 2 C C26 PEE . . . RA 30 186.637 182.61 118.035 1 26.91 ? C26 PEE 501 r 1 
HETATM 3 C C25 PEE . . . RA 30 186.68 182.53 116.514 1 26.91 ? C25 PEE 501 r 1 
HETATM 4 C C24 PEE . . . RA 30 185.527 181.698 115.953 1 26.91 ? C24 PEE 501 r 1 
HETATM 5 C C23 PEE . . . RA 30 185.572 181.577 114.43 1 26.91 ? C23 PEE 501 r 1 
HETATM 6 C C22 PEE . . . RA 30 185.357 182.923 113.741 1 26.91 ? C22 PEE 501 r 1 
HETATM 7 C C21 PEE . . . RA 30 185.184 182.792 112.224 1 26.91 ? C21 PEE 501 r 1 
HETATM 8 C C20 PEE . . . RA 30 183.854 182.145 111.836 1 26.91 ? C20 PEE 501 r 1 
HETATM 9 C C19 PEE . . . RA 30 183.563 182.29 110.341 1 26.91 ? C19 PEE 501 r 1 
HETATM 10 C C18 PEE . . . RA 30 182.419 181.387 109.875 1 26.91 ? C18 PEE 501 r 1 
HETATM 11 C C17 PEE . . . RA 30 182.688 179.914 110.185 1 26.91 ? C17 PEE 501 r 1 
HETATM 12 C C16 PEE . . . RA 30 182.154 178.976 109.103 1 26.91 ? C16 PEE 501 r 1 
HETATM 13 C C15 PEE . . . RA 30 182.403 179.515 107.694 1 26.91 ? C15 PEE 501 r 1 
HETATM 14 C C14 PEE . . . RA 30 182.166 178.455 106.615 1 26.91 ? C14 PEE 501 r 1 
HETATM 15 C C13 PEE . . . RA 30 183.476 177.907 106.039 1 26.91 ? C13 PEE 501 r 1 
HETATM 16 C C12 PEE . . . RA 30 183.692 178.353 104.588 1 26.91 ? C12 PEE 501 r 1 
HETATM 17 C C11 PEE . . . RA 30 182.798 177.588 103.607 1 26.91 ? C11 PEE 501 r 1 
HETATM 18 C C10 PEE . . . RA 30 182.159 178.508 102.559 1 26.91 ? C10 PEE 501 r 1 
HETATM 19 O O4 PEE . . . RA 30 182.611 179.583 102.359 1 26.91 ? O4 PEE 501 r 1 
HETATM 20 O O2 PEE . . . RA 30 181.039 178.075 101.836 1 26.91 ? O2 PEE 501 r 1 
HETATM 21 C C2 PEE . . . RA 30 179.975 178.987 101.839 1 26.91 ? C2 PEE 501 r 1 
HETATM 22 C C1 PEE . . . RA 30 179.212 178.871 100.521 1 26.91 ? C1 PEE 501 r 1 
HETATM 23 O O3P PEE . . . RA 30 178.363 177.757 100.589 1 26.91 ? O3P PEE 501 r 1 
HETATM 24 P P PEE . . . RA 30 177.708 177.2 99.177 1 26.91 ? P PEE 501 r 1 
HETATM 25 O O2P PEE . . . RA 30 176.285 176.757 99.421 1 26.91 ? O2P PEE 501 r 1 
HETATM 26 O O1P PEE . . . RA 30 178.52 176.031 98.673 1 26.91 ? O1P PEE 501 r 1 
HETATM 27 O O4P PEE . . . RA 30 177.728 178.412 98.053 1 26.91 ? O4P PEE 501 r 1 
HETATM 28 C C4 PEE . . . RA 30 176.589 179.224 97.921 1 26.91 ? C4 PEE 501 r 1 
HETATM 29 C C5 PEE . . . RA 30 176.256 179.35 96.434 1 26.91 ? C5 PEE 501 r 1 
HETATM 30 N N PEE . . . RA 30 175.764 178.086 95.919 1 26.91 ? N PEE 501 r 1 
HETATM 31 C C3 PEE . . . RA 30 179.035 178.681 103.001 1 26.91 ? C3 PEE 501 r 1 
HETATM 32 O O3 PEE . . . RA 30 178.916 179.831 103.791 1 26.91 ? O3 PEE 501 r 1 
HETATM 33 C C30 PEE . . . RA 30 178.322 179.599 105.038 1 26.91 ? C30 PEE 501 r 1 
HETATM 34 O O5 PEE . . . RA 30 177.598 178.674 105.184 1 26.91 ? O5 PEE 501 r 1 
HETATM 35 C C31 PEE . . . RA 30 178.605 180.536 106.215 1 26.91 ? C31 PEE 501 r 1 
HETATM 36 C C32 PEE . . . RA 30 177.49 180.502 107.263 1 26.91 ? C32 PEE 501 r 1 
HETATM 37 C C33 PEE . . . RA 30 178.013 180.737 108.683 1 26.91 ? C33 PEE 501 r 1 
HETATM 38 C C34 PEE . . . RA 30 177.491 179.687 109.669 1 26.91 ? C34 PEE 501 r 1 
HETATM 39 C C35 PEE . . . RA 30 178.167 179.779 111.042 1 26.91 ? C35 PEE 501 r 1 
HETATM 40 C C36 PEE . . . RA 30 177.999 181.159 111.684 1 26.91 ? C36 PEE 501 r 1 
HETATM 41 C C37 PEE . . . RA 30 179.043 181.424 112.771 1 26.91 ? C37 PEE 501 r 1 
HETATM 42 C C38 PEE . . . RA 30 178.977 182.854 113.308 1 26.91 ? C38 PEE 501 r 1 
HETATM 43 C C39 PEE . . . RA 30 178.907 183.894 112.195 1 26.91 ? C39 PEE 501 r 1 
HETATM 44 C C40 PEE . . . RA 30 179.339 185.276 112.671 1 26.91 ? C40 PEE 501 r 1 
HETATM 45 C C41 PEE . . . RA 30 180.817 185.328 113.04 1 26.91 ? C41 PEE 501 r 1 
HETATM 46 C C42 PEE . . . RA 30 181.633 186.166 112.062 1 26.91 ? C42 PEE 501 r 1 
HETATM 47 C C43 PEE . . . RA 30 182.655 187.047 112.775 1 26.91 ? C43 PEE 501 r 1 
HETATM 48 C C44 PEE . . . RA 30 183.425 186.286 113.847 1 26.91 ? C44 PEE 501 r 1 
HETATM 49 C C45 PEE . . . RA 30 184.514 187.136 114.499 1 26.91 ? C45 PEE 501 r 1 
HETATM 50 C C46 PEE . . . RA 30 185.427 186.307 115.4 1 26.91 ? C46 PEE 501 r 1 
HETATM 51 C C47 PEE . . . RA 30 184.719 185.841 116.671 1 26.91 ? C47 PEE 501 r 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    88 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           51 
#