data_7VYI
#
_model_server_result.job_id            QvRqKGrAu8XNFeOXz1P-hQ 
_model_server_result.datetime_utc      '2024-12-21 16:46:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vyi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"SA","auth_seq_id":502}' 
#
_entry.id    7VYI 
#
_exptl.entry_id    7VYI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              767.132 
_entity.id                          33 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VYI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VYI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 33 HA N N 
? 33 JA N N 
? 33 NA N N 
? 33 SA N N 
? 33 TA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C42 H89 N O8 P 1' 
_chem_comp.formula_weight    767.132 
_chem_comp.id                PLX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VYI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 101 101 PEE PEE . 
EA 30 PEE U 1 102 401 PEE PEE . 
FA 31 8Q1 X 1 201 201 8Q1 8Q1 . 
GA 32 CDL a 1 201 201 CDL CDL . 
HA 33 PLX a 1 202 101 PLX PLX . 
IA 30 PEE b 1 201 720 PEE PEE . 
JA 33 PLX g 1 201 705 PLX PLX . 
KA 32 CDL g 1 202 102 CDL CDL . 
LA 32 CDL i 1 401 401 CDL CDL . 
MA 30 PEE i 1 402 718 PEE PEE . 
NA 33 PLX j 1 201 203 PLX PLX . 
OA 32 CDL l 1 701 713 CDL CDL . 
PA 30 PEE l 1 702 719 PEE PEE . 
QA 30 PEE m 1 201 202 PEE PEE . 
RA 30 PEE r 1 501 202 PEE PEE . 
SA 33 PLX r 1 502 205 PLX PLX . 
TA 33 PLX r 1 503 201 PLX PLX . 
UA 32 CDL r 1 504 712 CDL CDL . 
VA 32 CDL r 1 505 714 CDL CDL . 
WA 34 UQ s 1 401 403 UQ UQ . 
XA 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 PLX . . . SA 33 186.646 190.373 119.162 1 41.04 ? C23 PLX 502 r 1 
HETATM 2 C C22 PLX . . . SA 33 188.147 190.147 118.805 1 41.04 ? C22 PLX 502 r 1 
HETATM 3 C C21 PLX . . . SA 33 188.42 190.276 117.271 1 41.04 ? C21 PLX 502 r 1 
HETATM 4 C C20 PLX . . . SA 33 187.744 189.134 116.443 1 41.04 ? C20 PLX 502 r 1 
HETATM 5 C C19 PLX . . . SA 33 187.641 189.484 114.92 1 41.04 ? C19 PLX 502 r 1 
HETATM 6 C C18 PLX . . . SA 33 186.984 190.894 114.677 1 41.04 ? C18 PLX 502 r 1 
HETATM 7 C C17 PLX . . . SA 33 186.823 191.23 113.142 1 41.04 ? C17 PLX 502 r 1 
HETATM 8 C C16 PLX . . . SA 33 185.522 190.604 112.532 1 41.04 ? C16 PLX 502 r 1 
HETATM 9 C C15 PLX . . . SA 33 184.932 191.474 111.359 1 41.04 ? C15 PLX 502 r 1 
HETATM 10 C C14 PLX . . . SA 33 184.871 190.689 110.004 1 41.04 ? C14 PLX 502 r 1 
HETATM 11 C C13 PLX . . . SA 33 184.984 191.641 108.755 1 41.04 ? C13 PLX 502 r 1 
HETATM 12 C C12 PLX . . . SA 33 183.8 192.663 108.684 1 41.04 ? C12 PLX 502 r 1 
HETATM 13 C C11 PLX . . . SA 33 182.403 191.953 108.714 1 41.04 ? C11 PLX 502 r 1 
HETATM 14 C C10 PLX . . . SA 33 181.551 192.231 107.432 1 41.04 ? C10 PLX 502 r 1 
HETATM 15 C C9 PLX . . . SA 33 182.399 192.844 106.257 1 41.04 ? C9 PLX 502 r 1 
HETATM 16 C C8 PLX . . . SA 33 181.54 193.097 104.961 1 41.04 ? C8 PLX 502 r 1 
HETATM 17 C C7 PLX . . . SA 33 181.776 194.538 104.363 1 41.04 ? C7 PLX 502 r 1 
HETATM 18 C C6 PLX . . . SA 33 181.007 195.642 105.141 1 41.04 ? C6 PLX 502 r 1 
HETATM 19 O O7 PLX . . . SA 33 181.707 195.993 106.275 1 41.04 ? O7 PLX 502 r 1 
HETATM 20 O O6 PLX . . . SA 33 180.856 196.78 104.306 1 41.04 ? O6 PLX 502 r 1 
HETATM 21 C C4 PLX . . . SA 33 179.547 197.285 104.154 1 41.04 ? C4 PLX 502 r 1 
HETATM 22 C C3 PLX . . . SA 33 179.371 197.759 102.703 1 41.04 ? C3 PLX 502 r 1 
HETATM 23 O O4 PLX . . . SA 33 178.082 197.333 102.249 1 41.04 ? O4 PLX 502 r 1 
HETATM 24 P P1 PLX . . . SA 33 177.946 196.72 100.697 1 41.04 ? P1 PLX 502 r 1 
HETATM 25 O O1 PLX . . . SA 33 178.132 195.06 100.747 1 41.04 ? O1 PLX 502 r 1 
HETATM 26 C C2 PLX . . . SA 33 179.454 194.53 100.868 1 41.04 ? C2 PLX 502 r 1 
HETATM 27 C C1 PLX . . . SA 33 179.389 192.965 100.764 1 41.04 ? C1 PLX 502 r 1 
HETATM 28 N N1 PLX . . . SA 33 179.142 192.496 99.357 1 41.04 ? N1 PLX 502 r 1 
HETATM 29 C C1C PLX . . . SA 33 180.045 193.253 98.467 1 41.04 ? C1C PLX 502 r 1 
HETATM 30 C C1B PLX . . . SA 33 179.486 191.045 99.337 1 41.04 ? C1B PLX 502 r 1 
HETATM 31 C C1A PLX . . . SA 33 177.782 192.608 98.771 1 41.04 ? C1A PLX 502 r 1 
HETATM 32 O O2 PLX . . . SA 33 179.017 197.323 99.812 1 41.04 ? O2 PLX 502 r 1 
HETATM 33 C C5 PLX . . . SA 33 178.479 196.213 104.46 1 41.04 ? C5 PLX 502 r 1 
HETATM 34 O O8 PLX . . . SA 33 177.473 196.798 105.288 1 41.04 ? O8 PLX 502 r 1 
HETATM 35 C C24 PLX . . . SA 33 177.089 195.981 106.373 1 41.04 ? C24 PLX 502 r 1 
HETATM 36 O O9 PLX . . . SA 33 178.225 195.541 107.04 1 41.04 ? O9 PLX 502 r 1 
HETATM 37 C C25 PLX . . . SA 33 176.297 194.765 105.847 1 41.04 ? C25 PLX 502 r 1 
HETATM 38 C C26 PLX . . . SA 33 176.155 193.641 106.923 1 41.04 ? C26 PLX 502 r 1 
HETATM 39 C C27 PLX . . . SA 33 175.494 194.16 108.238 1 41.04 ? C27 PLX 502 r 1 
HETATM 40 C C28 PLX . . . SA 33 175.175 192.998 109.239 1 41.04 ? C28 PLX 502 r 1 
HETATM 41 C C29 PLX . . . SA 33 176.474 192.395 109.865 1 41.04 ? C29 PLX 502 r 1 
HETATM 42 C C30 PLX . . . SA 33 176.619 192.736 111.397 1 41.04 ? C30 PLX 502 r 1 
HETATM 43 C C31 PLX . . . SA 33 177.515 194.009 111.641 1 41.04 ? C31 PLX 502 r 1 
HETATM 44 C C32 PLX . . . SA 33 177.871 194.214 113.167 1 41.04 ? C32 PLX 502 r 1 
HETATM 45 C C33 PLX . . . SA 33 178.079 192.842 113.927 1 41.04 ? C33 PLX 502 r 1 
HETATM 46 C C34 PLX . . . SA 33 179.141 192.954 115.092 1 41.04 ? C34 PLX 502 r 1 
HETATM 47 C C35 PLX . . . SA 33 179.312 191.594 115.892 1 41.04 ? C35 PLX 502 r 1 
HETATM 48 C C36 PLX . . . SA 33 180.821 191.212 116.098 1 41.04 ? C36 PLX 502 r 1 
HETATM 49 C C37 PLX . . . SA 33 181.001 189.869 116.896 1 41.04 ? C37 PLX 502 r 1 
HETATM 50 C C38 PLX . . . SA 33 180.52 188.622 116.087 1 41.04 ? C38 PLX 502 r 1 
HETATM 51 C C39 PLX . . . SA 33 180.488 187.335 116.951 1 41.04 ? C39 PLX 502 r 1 
HETATM 52 O O3 PLX . . . SA 33 176.579 197.059 100.136 1 41.04 ? O3 PLX 502 r 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    50 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           52 
#