data_7VYI # _model_server_result.job_id g2JvDFLE3FWIdyEvt7hEbQ _model_server_result.datetime_utc '2024-12-21 17:16:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"TA","auth_seq_id":503}' # _entry.id 7VYI # _exptl.entry_id 7VYI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 767.132 _entity.id 33 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 33 HA N N ? 33 JA N N ? 33 NA N N ? 33 SA N N ? 33 TA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C42 H89 N O8 P 1' _chem_comp.formula_weight 767.132 _chem_comp.id PLX _chem_comp.mon_nstd_flag . _chem_comp.name (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VYI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE U 1 101 101 PEE PEE . EA 30 PEE U 1 102 401 PEE PEE . FA 31 8Q1 X 1 201 201 8Q1 8Q1 . GA 32 CDL a 1 201 201 CDL CDL . HA 33 PLX a 1 202 101 PLX PLX . IA 30 PEE b 1 201 720 PEE PEE . JA 33 PLX g 1 201 705 PLX PLX . KA 32 CDL g 1 202 102 CDL CDL . LA 32 CDL i 1 401 401 CDL CDL . MA 30 PEE i 1 402 718 PEE PEE . NA 33 PLX j 1 201 203 PLX PLX . OA 32 CDL l 1 701 713 CDL CDL . PA 30 PEE l 1 702 719 PEE PEE . QA 30 PEE m 1 201 202 PEE PEE . RA 30 PEE r 1 501 202 PEE PEE . SA 33 PLX r 1 502 205 PLX PLX . TA 33 PLX r 1 503 201 PLX PLX . UA 32 CDL r 1 504 712 CDL CDL . VA 32 CDL r 1 505 714 CDL CDL . WA 34 UQ s 1 401 403 UQ UQ . XA 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C23 PLX . . . TA 33 234.377 189.051 123.835 1 28.7 ? C23 PLX 503 r 1 HETATM 2 C C22 PLX . . . TA 33 235.466 190.134 123.568 1 28.7 ? C22 PLX 503 r 1 HETATM 3 C C21 PLX . . . TA 33 235.951 190.128 122.082 1 28.7 ? C21 PLX 503 r 1 HETATM 4 C C20 PLX . . . TA 33 236.644 188.78 121.692 1 28.7 ? C20 PLX 503 r 1 HETATM 5 C C19 PLX . . . TA 33 236.503 188.46 120.165 1 28.7 ? C19 PLX 503 r 1 HETATM 6 C C18 PLX . . . TA 33 237.455 189.339 119.272 1 28.7 ? C18 PLX 503 r 1 HETATM 7 C C17 PLX . . . TA 33 237.201 189.109 117.73 1 28.7 ? C17 PLX 503 r 1 HETATM 8 C C16 PLX . . . TA 33 236.1 190.069 117.161 1 28.7 ? C16 PLX 503 r 1 HETATM 9 C C15 PLX . . . TA 33 235.232 189.384 116.037 1 28.7 ? C15 PLX 503 r 1 HETATM 10 C C14 PLX . . . TA 33 233.705 189.375 116.391 1 28.7 ? C14 PLX 503 r 1 HETATM 11 C C13 PLX . . . TA 33 232.845 190.319 115.468 1 28.7 ? C13 PLX 503 r 1 HETATM 12 C C12 PLX . . . TA 33 233.717 191.233 114.542 1 28.7 ? C12 PLX 503 r 1 HETATM 13 C C11 PLX . . . TA 33 233.237 191.202 113.052 1 28.7 ? C11 PLX 503 r 1 HETATM 14 C C10 PLX . . . TA 33 234.075 190.21 112.182 1 28.7 ? C10 PLX 503 r 1 HETATM 15 C C9 PLX . . . TA 33 233.178 189.39 111.184 1 28.7 ? C9 PLX 503 r 1 HETATM 16 C C8 PLX . . . TA 33 234.029 188.518 110.185 1 28.7 ? C8 PLX 503 r 1 HETATM 17 C C7 PLX . . . TA 33 233.239 187.244 109.691 1 28.7 ? C7 PLX 503 r 1 HETATM 18 C C6 PLX . . . TA 33 231.999 187.629 108.84 1 28.7 ? C6 PLX 503 r 1 HETATM 19 O O7 PLX . . . TA 33 232.346 188.63 107.959 1 28.7 ? O7 PLX 503 r 1 HETATM 20 O O6 PLX . . . TA 33 231.538 186.495 108.122 1 28.7 ? O6 PLX 503 r 1 HETATM 21 C C4 PLX . . . TA 33 230.142 186.455 107.963 1 28.7 ? C4 PLX 503 r 1 HETATM 22 C C3 PLX . . . TA 33 229.762 187.14 106.643 1 28.7 ? C3 PLX 503 r 1 HETATM 23 O O4 PLX . . . TA 33 230.288 186.36 105.565 1 28.7 ? O4 PLX 503 r 1 HETATM 24 P P1 PLX . . . TA 33 230.162 186.979 104.015 1 28.7 ? P1 PLX 503 r 1 HETATM 25 O O1 PLX . . . TA 33 231.051 186.039 102.958 1 28.7 ? O1 PLX 503 r 1 HETATM 26 C C2 PLX . . . TA 33 231.862 184.984 103.484 1 28.7 ? C2 PLX 503 r 1 HETATM 27 C C1 PLX . . . TA 33 232.865 184.504 102.376 1 28.7 ? C1 PLX 503 r 1 HETATM 28 N N1 PLX . . . TA 33 232.163 183.89 101.196 1 28.7 ? N1 PLX 503 r 1 HETATM 29 C C1C PLX . . . TA 33 232.061 184.936 100.157 1 28.7 ? C1C PLX 503 r 1 HETATM 30 C C1B PLX . . . TA 33 233.036 182.775 100.724 1 28.7 ? C1B PLX 503 r 1 HETATM 31 C C1A PLX . . . TA 33 230.806 183.308 101.356 1 28.7 ? C1A PLX 503 r 1 HETATM 32 O O2 PLX . . . TA 33 230.702 188.393 104.006 1 28.7 ? O2 PLX 503 r 1 HETATM 33 C C5 PLX . . . TA 33 229.658 184.993 107.939 1 28.7 ? C5 PLX 503 r 1 HETATM 34 O O8 PLX . . . TA 33 228.939 184.737 109.147 1 28.7 ? O8 PLX 503 r 1 HETATM 35 C C24 PLX . . . TA 33 227.983 183.704 109.041 1 28.7 ? C24 PLX 503 r 1 HETATM 36 O O9 PLX . . . TA 33 227.457 183.689 107.756 1 28.7 ? O9 PLX 503 r 1 HETATM 37 C C25 PLX . . . TA 33 226.848 183.954 110.056 1 28.7 ? C25 PLX 503 r 1 HETATM 38 C C26 PLX . . . TA 33 226.823 182.892 111.201 1 28.7 ? C26 PLX 503 r 1 HETATM 39 C C27 PLX . . . TA 33 225.902 181.677 110.866 1 28.7 ? C27 PLX 503 r 1 HETATM 40 C C28 PLX . . . TA 33 224.555 181.724 111.664 1 28.7 ? C28 PLX 503 r 1 HETATM 41 C C29 PLX . . . TA 33 224.085 180.309 112.134 1 28.7 ? C29 PLX 503 r 1 HETATM 42 C C30 PLX . . . TA 33 223.911 180.237 113.698 1 28.7 ? C30 PLX 503 r 1 HETATM 43 C C31 PLX . . . TA 33 224.519 178.922 114.319 1 28.7 ? C31 PLX 503 r 1 HETATM 44 C C32 PLX . . . TA 33 223.41 177.837 114.617 1 28.7 ? C32 PLX 503 r 1 HETATM 45 C C33 PLX . . . TA 33 222.705 178.068 116.014 1 28.7 ? C33 PLX 503 r 1 HETATM 46 C C34 PLX . . . TA 33 221.172 177.685 115.98 1 28.7 ? C34 PLX 503 r 1 HETATM 47 C C35 PLX . . . TA 33 220.334 178.647 115.037 1 28.7 ? C35 PLX 503 r 1 HETATM 48 C C36 PLX . . . TA 33 219.174 179.381 115.799 1 28.7 ? C36 PLX 503 r 1 HETATM 49 C C37 PLX . . . TA 33 218.423 180.41 114.879 1 28.7 ? C37 PLX 503 r 1 HETATM 50 C C38 PLX . . . TA 33 217.785 179.733 113.625 1 28.7 ? C38 PLX 503 r 1 HETATM 51 C C39 PLX . . . TA 33 218.038 180.537 112.324 1 28.7 ? C39 PLX 503 r 1 HETATM 52 O O3 PLX . . . TA 33 228.708 186.983 103.589 1 28.7 ? O3 PLX 503 r 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 70 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 52 #