data_7VYI
#
_model_server_result.job_id            RwcJ2sB_WEh6ujjwpHE-eg 
_model_server_result.datetime_utc      '2024-12-21 17:00:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vyi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"UA","auth_seq_id":504}' 
#
_entry.id    7VYI 
#
_exptl.entry_id    7VYI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          32 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VYI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VYI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 32 GA N N 
? 32 KA N N 
? 32 LA N N 
? 32 OA N N 
? 32 UA N N 
? 32 VA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VYI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 101 101 PEE PEE . 
EA 30 PEE U 1 102 401 PEE PEE . 
FA 31 8Q1 X 1 201 201 8Q1 8Q1 . 
GA 32 CDL a 1 201 201 CDL CDL . 
HA 33 PLX a 1 202 101 PLX PLX . 
IA 30 PEE b 1 201 720 PEE PEE . 
JA 33 PLX g 1 201 705 PLX PLX . 
KA 32 CDL g 1 202 102 CDL CDL . 
LA 32 CDL i 1 401 401 CDL CDL . 
MA 30 PEE i 1 402 718 PEE PEE . 
NA 33 PLX j 1 201 203 PLX PLX . 
OA 32 CDL l 1 701 713 CDL CDL . 
PA 30 PEE l 1 702 719 PEE PEE . 
QA 30 PEE m 1 201 202 PEE PEE . 
RA 30 PEE r 1 501 202 PEE PEE . 
SA 33 PLX r 1 502 205 PLX PLX . 
TA 33 PLX r 1 503 201 PLX PLX . 
UA 32 CDL r 1 504 712 CDL CDL . 
VA 32 CDL r 1 505 714 CDL CDL . 
WA 34 UQ s 1 401 403 UQ UQ . 
XA 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . UA 32 230.303 191.706 133.946 1 28.89 ? C1 CDL 504 r 1 
HETATM 2 O O1 CDL . . . UA 32 229.991 190.955 132.812 1 28.89 ? O1 CDL 504 r 1 
HETATM 3 C CA2 CDL . . . UA 32 230.147 193.203 133.578 1 28.89 ? CA2 CDL 504 r 1 
HETATM 4 O OA2 CDL . . . UA 32 230.047 193.296 132.165 1 28.89 ? OA2 CDL 504 r 1 
HETATM 5 P PA1 CDL . . . UA 32 230.277 194.772 131.445 1 28.89 ? PA1 CDL 504 r 1 
HETATM 6 O OA3 CDL . . . UA 32 231.703 194.892 130.97 1 28.89 ? OA3 CDL 504 r 1 
HETATM 7 O OA4 CDL . . . UA 32 229.982 195.861 132.43 1 28.89 ? OA4 CDL 504 r 1 
HETATM 8 O OA5 CDL . . . UA 32 229.249 194.906 130.15 1 28.89 ? OA5 CDL 504 r 1 
HETATM 9 C CA3 CDL . . . UA 32 229.216 193.836 129.221 1 28.89 ? CA3 CDL 504 r 1 
HETATM 10 C CA4 CDL . . . UA 32 229.326 194.418 127.822 1 28.89 ? CA4 CDL 504 r 1 
HETATM 11 O OA6 CDL . . . UA 32 228.306 195.36 127.63 1 28.89 ? OA6 CDL 504 r 1 
HETATM 12 C CA5 CDL . . . UA 32 228.737 196.542 126.969 1 28.89 ? CA5 CDL 504 r 1 
HETATM 13 O OA7 CDL . . . UA 32 229.9 196.75 126.825 1 28.89 ? OA7 CDL 504 r 1 
HETATM 14 C C11 CDL . . . UA 32 227.69 197.564 126.427 1 28.89 ? C11 CDL 504 r 1 
HETATM 15 C C12 CDL . . . UA 32 227.276 197.238 124.988 1 28.89 ? C12 CDL 504 r 1 
HETATM 16 C C13 CDL . . . UA 32 226.484 198.367 124.335 1 28.89 ? C13 CDL 504 r 1 
HETATM 17 C C14 CDL . . . UA 32 227.043 198.73 122.946 1 28.89 ? C14 CDL 504 r 1 
HETATM 18 C C15 CDL . . . UA 32 225.969 199.384 122.031 1 28.89 ? C15 CDL 504 r 1 
HETATM 19 C C16 CDL . . . UA 32 226.473 199.562 120.578 1 28.89 ? C16 CDL 504 r 1 
HETATM 20 C C17 CDL . . . UA 32 225.978 198.415 119.647 1 28.89 ? C17 CDL 504 r 1 
HETATM 21 C C18 CDL . . . UA 32 226.234 198.727 118.151 1 28.89 ? C18 CDL 504 r 1 
HETATM 22 C C19 CDL . . . UA 32 227.744 198.933 117.849 1 28.89 ? C19 CDL 504 r 1 
HETATM 23 C C20 CDL . . . UA 32 228.09 198.635 116.371 1 28.89 ? C20 CDL 504 r 1 
HETATM 24 C C21 CDL . . . UA 32 227.945 197.131 116.015 1 28.89 ? C21 CDL 504 r 1 
HETATM 25 C C22 CDL . . . UA 32 228.072 196.885 114.485 1 28.89 ? C22 CDL 504 r 1 
HETATM 26 C C23 CDL . . . UA 32 229.195 197.741 113.857 1 28.89 ? C23 CDL 504 r 1 
HETATM 27 C C24 CDL . . . UA 32 228.99 197.968 112.337 1 28.89 ? C24 CDL 504 r 1 
HETATM 28 C C25 CDL . . . UA 32 229.796 199.171 111.818 1 28.89 ? C25 CDL 504 r 1 
HETATM 29 C C26 CDL . . . UA 32 231.289 199.094 112.21 1 28.89 ? C26 CDL 504 r 1 
HETATM 30 C C27 CDL . . . UA 32 232.052 198.032 111.412 1 28.89 ? C27 CDL 504 r 1 
HETATM 31 C CA6 CDL . . . UA 32 229.183 193.284 126.79 1 28.89 ? CA6 CDL 504 r 1 
HETATM 32 O OA8 CDL . . . UA 32 227.824 192.896 126.746 1 28.89 ? OA8 CDL 504 r 1 
HETATM 33 C CA7 CDL . . . UA 32 227.129 193.375 125.593 1 28.89 ? CA7 CDL 504 r 1 
HETATM 34 O OA9 CDL . . . UA 32 226.092 193.927 125.718 1 28.89 ? OA9 CDL 504 r 1 
HETATM 35 C C31 CDL . . . UA 32 227.734 193.172 124.191 1 28.89 ? C31 CDL 504 r 1 
HETATM 36 C C32 CDL . . . UA 32 226.66 192.995 123.121 1 28.89 ? C32 CDL 504 r 1 
HETATM 37 C C33 CDL . . . UA 32 226.202 194.339 122.537 1 28.89 ? C33 CDL 504 r 1 
HETATM 38 C C34 CDL . . . UA 32 225.089 194.162 121.48 1 28.89 ? C34 CDL 504 r 1 
HETATM 39 C C35 CDL . . . UA 32 223.68 194.449 122.064 1 28.89 ? C35 CDL 504 r 1 
HETATM 40 C C36 CDL . . . UA 32 222.547 193.932 121.148 1 28.89 ? C36 CDL 504 r 1 
HETATM 41 C C37 CDL . . . UA 32 222.226 194.916 120.011 1 28.89 ? C37 CDL 504 r 1 
HETATM 42 C C38 CDL . . . UA 32 222.471 194.313 118.623 1 28.89 ? C38 CDL 504 r 1 
HETATM 43 C C39 CDL . . . UA 32 223.911 194.522 118.12 1 28.89 ? C39 CDL 504 r 1 
HETATM 44 C C40 CDL . . . UA 32 224.426 193.311 117.311 1 28.89 ? C40 CDL 504 r 1 
HETATM 45 C C41 CDL . . . UA 32 225.963 193.398 117.016 1 28.89 ? C41 CDL 504 r 1 
HETATM 46 C C42 CDL . . . UA 32 226.561 192.017 116.633 1 28.89 ? C42 CDL 504 r 1 
HETATM 47 C C43 CDL . . . UA 32 227.471 192.082 115.372 1 28.89 ? C43 CDL 504 r 1 
HETATM 48 C C44 CDL . . . UA 32 228.097 190.702 115.04 1 28.89 ? C44 CDL 504 r 1 
HETATM 49 C C45 CDL . . . UA 32 228.69 190.034 116.278 1 28.89 ? C45 CDL 504 r 1 
HETATM 50 C C46 CDL . . . UA 32 229.169 188.595 116.003 1 28.89 ? C46 CDL 504 r 1 
HETATM 51 C C47 CDL . . . UA 32 228.95 187.678 117.203 1 28.89 ? C47 CDL 504 r 1 
HETATM 52 C CB2 CDL . . . UA 32 231.767 191.345 134.37 1 28.89 ? CB2 CDL 504 r 1 
HETATM 53 O OB2 CDL . . . UA 32 232.327 190.506 133.369 1 28.89 ? OB2 CDL 504 r 1 
HETATM 54 P PB2 CDL . . . UA 32 233.96 190.674 133.022 1 28.89 ? PB2 CDL 504 r 1 
HETATM 55 O OB3 CDL . . . UA 32 234.658 189.341 133.209 1 28.89 ? OB3 CDL 504 r 1 
HETATM 56 O OB4 CDL . . . UA 32 234.567 191.696 133.954 1 28.89 ? OB4 CDL 504 r 1 
HETATM 57 O OB5 CDL . . . UA 32 234.144 191.181 131.435 1 28.89 ? OB5 CDL 504 r 1 
HETATM 58 C CB3 CDL . . . UA 32 234.477 190.212 130.45 1 28.89 ? CB3 CDL 504 r 1 
HETATM 59 C CB4 CDL . . . UA 32 233.396 190.247 129.361 1 28.89 ? CB4 CDL 504 r 1 
HETATM 60 O OB6 CDL . . . UA 32 233.381 191.519 128.758 1 28.89 ? OB6 CDL 504 r 1 
HETATM 61 C CB5 CDL . . . UA 32 233.347 191.485 127.335 1 28.89 ? CB5 CDL 504 r 1 
HETATM 62 O OB7 CDL . . . UA 32 233.721 190.521 126.755 1 28.89 ? OB7 CDL 504 r 1 
HETATM 63 C C51 CDL . . . UA 32 232.822 192.703 126.547 1 28.89 ? C51 CDL 504 r 1 
HETATM 64 C C52 CDL . . . UA 32 233.035 192.545 125.032 1 28.89 ? C52 CDL 504 r 1 
HETATM 65 C C53 CDL . . . UA 32 233.012 193.891 124.291 1 28.89 ? C53 CDL 504 r 1 
HETATM 66 C C54 CDL . . . UA 32 231.608 194.531 124.268 1 28.89 ? C54 CDL 504 r 1 
HETATM 67 C C55 CDL . . . UA 32 230.986 194.511 122.863 1 28.89 ? C55 CDL 504 r 1 
HETATM 68 C C56 CDL . . . UA 32 229.98 195.673 122.647 1 28.89 ? C56 CDL 504 r 1 
HETATM 69 C C57 CDL . . . UA 32 229.879 196.116 121.171 1 28.89 ? C57 CDL 504 r 1 
HETATM 70 C C58 CDL . . . UA 32 230.327 195.014 120.179 1 28.89 ? C58 CDL 504 r 1 
HETATM 71 C C59 CDL . . . UA 32 229.127 194.268 119.546 1 28.89 ? C59 CDL 504 r 1 
HETATM 72 C C60 CDL . . . UA 32 229.568 193.233 118.494 1 28.89 ? C60 CDL 504 r 1 
HETATM 73 C C61 CDL . . . UA 32 230.733 193.745 117.603 1 28.89 ? C61 CDL 504 r 1 
HETATM 74 C C62 CDL . . . UA 32 230.244 194.223 116.219 1 28.89 ? C62 CDL 504 r 1 
HETATM 75 C C63 CDL . . . UA 32 231.173 193.781 115.078 1 28.89 ? C63 CDL 504 r 1 
HETATM 76 C C64 CDL . . . UA 32 231.933 194.96 114.45 1 28.89 ? C64 CDL 504 r 1 
HETATM 77 C C65 CDL . . . UA 32 233.427 194.912 114.741 1 28.89 ? C65 CDL 504 r 1 
HETATM 78 C C66 CDL . . . UA 32 234.189 196.033 114.043 1 28.89 ? C66 CDL 504 r 1 
HETATM 79 C CB6 CDL . . . UA 32 232.036 189.97 129.992 1 28.89 ? CB6 CDL 504 r 1 
HETATM 80 O OB8 CDL . . . UA 32 231.033 190.081 128.987 1 28.89 ? OB8 CDL 504 r 1 
HETATM 81 C CB7 CDL . . . UA 32 230.291 188.89 128.791 1 28.89 ? CB7 CDL 504 r 1 
HETATM 82 O OB9 CDL . . . UA 32 229.95 188.246 129.726 1 28.89 ? OB9 CDL 504 r 1 
HETATM 83 C C71 CDL . . . UA 32 229.915 188.435 127.363 1 28.89 ? C71 CDL 504 r 1 
HETATM 84 C C72 CDL . . . UA 32 229.19 189.541 126.585 1 28.89 ? C72 CDL 504 r 1 
HETATM 85 C C73 CDL . . . UA 32 227.859 189.058 125.984 1 28.89 ? C73 CDL 504 r 1 
HETATM 86 C C74 CDL . . . UA 32 227.757 189.376 124.484 1 28.89 ? C74 CDL 504 r 1 
HETATM 87 C C75 CDL . . . UA 32 229.045 188.975 123.715 1 28.89 ? C75 CDL 504 r 1 
HETATM 88 C C76 CDL . . . UA 32 229.664 190.173 122.95 1 28.89 ? C76 CDL 504 r 1 
HETATM 89 C C77 CDL . . . UA 32 229.41 190.09 121.416 1 28.89 ? C77 CDL 504 r 1 
HETATM 90 C C78 CDL . . . UA 32 230.719 190.128 120.616 1 28.89 ? C78 CDL 504 r 1 
HETATM 91 C C79 CDL . . . UA 32 231.622 191.306 121.041 1 28.89 ? C79 CDL 504 r 1 
HETATM 92 C C80 CDL . . . UA 32 232.964 191.33 120.264 1 28.89 ? C80 CDL 504 r 1 
HETATM 93 C C81 CDL . . . UA 32 233.657 192.69 120.347 1 28.89 ? C81 CDL 504 r 1 
HETATM 94 C C82 CDL . . . UA 32 234.869 192.789 119.375 1 28.89 ? C82 CDL 504 r 1 
HETATM 95 C C83 CDL . . . UA 32 235.296 194.246 119.118 1 28.89 ? C83 CDL 504 r 1 
HETATM 96 C C84 CDL . . . UA 32 234.229 195.037 118.323 1 28.89 ? C84 CDL 504 r 1 
HETATM 97 C C85 CDL . . . UA 32 233.657 196.221 119.127 1 28.89 ? C85 CDL 504 r 1 
HETATM 98 C C86 CDL . . . UA 32 232.712 197.087 118.29 1 28.89 ? C86 CDL 504 r 1 
HETATM 99 C C87 CDL . . . UA 32 232.348 198.392 118.995 1 28.89 ? C87 CDL 504 r 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           99 
#