data_7VYI
#
_model_server_result.job_id            YTzB4Rm0tYoK5Viu1xNOxA 
_model_server_result.datetime_utc      '2024-12-21 17:20:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vyi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"OA","auth_seq_id":701}' 
#
_entry.id    7VYI 
#
_exptl.entry_id    7VYI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          32 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VYI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VYI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 32 GA N N 
? 32 KA N N 
? 32 LA N N 
? 32 OA N N 
? 32 UA N N 
? 32 VA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VYI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 101 101 PEE PEE . 
EA 30 PEE U 1 102 401 PEE PEE . 
FA 31 8Q1 X 1 201 201 8Q1 8Q1 . 
GA 32 CDL a 1 201 201 CDL CDL . 
HA 33 PLX a 1 202 101 PLX PLX . 
IA 30 PEE b 1 201 720 PEE PEE . 
JA 33 PLX g 1 201 705 PLX PLX . 
KA 32 CDL g 1 202 102 CDL CDL . 
LA 32 CDL i 1 401 401 CDL CDL . 
MA 30 PEE i 1 402 718 PEE PEE . 
NA 33 PLX j 1 201 203 PLX PLX . 
OA 32 CDL l 1 701 713 CDL CDL . 
PA 30 PEE l 1 702 719 PEE PEE . 
QA 30 PEE m 1 201 202 PEE PEE . 
RA 30 PEE r 1 501 202 PEE PEE . 
SA 33 PLX r 1 502 205 PLX PLX . 
TA 33 PLX r 1 503 201 PLX PLX . 
UA 32 CDL r 1 504 712 CDL CDL . 
VA 32 CDL r 1 505 714 CDL CDL . 
WA 34 UQ s 1 401 403 UQ UQ . 
XA 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . OA 32 218.11 237.679 143.86 1 38.7 ? C1 CDL 701 l 1 
HETATM 2 O O1 CDL . . . OA 32 218.857 238.852 143.721 1 38.7 ? O1 CDL 701 l 1 
HETATM 3 C CA2 CDL . . . OA 32 216.861 237.796 142.948 1 38.7 ? CA2 CDL 701 l 1 
HETATM 4 O OA2 CDL . . . OA 32 216.921 239.039 142.262 1 38.7 ? OA2 CDL 701 l 1 
HETATM 5 P PA1 CDL . . . OA 32 215.502 239.758 141.792 1 38.7 ? PA1 CDL 701 l 1 
HETATM 6 O OA3 CDL . . . OA 32 214.427 238.709 141.651 1 38.7 ? OA3 CDL 701 l 1 
HETATM 7 O OA4 CDL . . . OA 32 215.085 240.765 142.821 1 38.7 ? OA4 CDL 701 l 1 
HETATM 8 O OA5 CDL . . . OA 32 215.731 240.521 140.334 1 38.7 ? OA5 CDL 701 l 1 
HETATM 9 C CA3 CDL . . . OA 32 214.659 240.536 139.404 1 38.7 ? CA3 CDL 701 l 1 
HETATM 10 C CA4 CDL . . . OA 32 215.008 241.494 138.273 1 38.7 ? CA4 CDL 701 l 1 
HETATM 11 O OA6 CDL . . . OA 32 214.557 240.965 137.055 1 38.7 ? OA6 CDL 701 l 1 
HETATM 12 C CA5 CDL . . . OA 32 213.334 241.527 136.592 1 38.7 ? CA5 CDL 701 l 1 
HETATM 13 O OA7 CDL . . . OA 32 212.695 242.237 137.305 1 38.7 ? OA7 CDL 701 l 1 
HETATM 14 C C11 CDL . . . OA 32 212.832 241.216 135.148 1 38.7 ? C11 CDL 701 l 1 
HETATM 15 C C12 CDL . . . OA 32 213.157 242.351 134.168 1 38.7 ? C12 CDL 701 l 1 
HETATM 16 C C13 CDL . . . OA 32 213.054 241.935 132.701 1 38.7 ? C13 CDL 701 l 1 
HETATM 17 C C14 CDL . . . OA 32 212.144 240.711 132.476 1 38.7 ? C14 CDL 701 l 1 
HETATM 18 C C15 CDL . . . OA 32 211.578 240.661 131.028 1 38.7 ? C15 CDL 701 l 1 
HETATM 19 C C16 CDL . . . OA 32 210.428 239.633 130.882 1 38.7 ? C16 CDL 701 l 1 
HETATM 20 C C17 CDL . . . OA 32 209.072 240.205 131.397 1 38.7 ? C17 CDL 701 l 1 
HETATM 21 C C18 CDL . . . OA 32 207.858 239.348 130.959 1 38.7 ? C18 CDL 701 l 1 
HETATM 22 C C19 CDL . . . OA 32 206.635 239.556 131.897 1 38.7 ? C19 CDL 701 l 1 
HETATM 23 C C20 CDL . . . OA 32 205.288 239.512 131.136 1 38.7 ? C20 CDL 701 l 1 
HETATM 24 C C21 CDL . . . OA 32 205.162 240.65 130.088 1 38.7 ? C21 CDL 701 l 1 
HETATM 25 C C22 CDL . . . OA 32 203.836 240.56 129.281 1 38.7 ? C22 CDL 701 l 1 
HETATM 26 C C23 CDL . . . OA 32 203.773 239.296 128.393 1 38.7 ? C23 CDL 701 l 1 
HETATM 27 C C24 CDL . . . OA 32 202.322 238.939 127.977 1 38.7 ? C24 CDL 701 l 1 
HETATM 28 C C25 CDL . . . OA 32 202.26 237.663 127.119 1 38.7 ? C25 CDL 701 l 1 
HETATM 29 C C26 CDL . . . OA 32 200.808 237.212 126.839 1 38.7 ? C26 CDL 701 l 1 
HETATM 30 C C27 CDL . . . OA 32 200.744 236.017 125.881 1 38.7 ? C27 CDL 701 l 1 
HETATM 31 C CA6 CDL . . . OA 32 216.535 241.695 138.209 1 38.7 ? CA6 CDL 701 l 1 
HETATM 32 O OA8 CDL . . . OA 32 216.955 241.511 136.871 1 38.7 ? OA8 CDL 701 l 1 
HETATM 33 C CA7 CDL . . . OA 32 217.252 242.726 136.178 1 38.7 ? CA7 CDL 701 l 1 
HETATM 34 O OA9 CDL . . . OA 32 216.708 243.73 136.482 1 38.7 ? OA9 CDL 701 l 1 
HETATM 35 C C31 CDL . . . OA 32 218.283 242.727 135.033 1 38.7 ? C31 CDL 701 l 1 
HETATM 36 C C32 CDL . . . OA 32 217.62 242.691 133.658 1 38.7 ? C32 CDL 701 l 1 
HETATM 37 C C33 CDL . . . OA 32 218.458 243.408 132.589 1 38.7 ? C33 CDL 701 l 1 
HETATM 38 C C34 CDL . . . OA 32 218.053 244.891 132.419 1 38.7 ? C34 CDL 701 l 1 
HETATM 39 C C35 CDL . . . OA 32 218.409 245.437 131.01 1 38.7 ? C35 CDL 701 l 1 
HETATM 40 C C36 CDL . . . OA 32 217.178 245.544 130.08 1 38.7 ? C36 CDL 701 l 1 
HETATM 41 C C37 CDL . . . OA 32 217.43 246.44 128.853 1 38.7 ? C37 CDL 701 l 1 
HETATM 42 C C38 CDL . . . OA 32 218.658 247.347 129.008 1 38.7 ? C38 CDL 701 l 1 
HETATM 43 C C39 CDL . . . OA 32 218.97 248.13 127.718 1 38.7 ? C39 CDL 701 l 1 
HETATM 44 C C40 CDL . . . OA 32 220.215 247.58 126.989 1 38.7 ? C40 CDL 701 l 1 
HETATM 45 C C41 CDL . . . OA 32 220.644 248.473 125.775 1 38.7 ? C41 CDL 701 l 1 
HETATM 46 C C42 CDL . . . OA 32 219.422 248.974 124.958 1 38.7 ? C42 CDL 701 l 1 
HETATM 47 C C43 CDL . . . OA 32 219.499 248.557 123.461 1 38.7 ? C43 CDL 701 l 1 
HETATM 48 C C44 CDL . . . OA 32 220.83 248.992 122.792 1 38.7 ? C44 CDL 701 l 1 
HETATM 49 C C45 CDL . . . OA 32 220.856 248.664 121.301 1 38.7 ? C45 CDL 701 l 1 
HETATM 50 C C46 CDL . . . OA 32 220.006 249.648 120.473 1 38.7 ? C46 CDL 701 l 1 
HETATM 51 C C47 CDL . . . OA 32 219.281 248.958 119.321 1 38.7 ? C47 CDL 701 l 1 
HETATM 52 C CB2 CDL . . . OA 32 219.03 236.47 143.472 1 38.7 ? CB2 CDL 701 l 1 
HETATM 53 O OB2 CDL . . . OA 32 219.781 236.83 142.32 1 38.7 ? OB2 CDL 701 l 1 
HETATM 54 P PB2 CDL . . . OA 32 221.032 235.822 141.833 1 38.7 ? PB2 CDL 701 l 1 
HETATM 55 O OB3 CDL . . . OA 32 222.292 236.177 142.599 1 38.7 ? OB3 CDL 701 l 1 
HETATM 56 O OB4 CDL . . . OA 32 220.658 234.385 142.109 1 38.7 ? OB4 CDL 701 l 1 
HETATM 57 O OB5 CDL . . . OA 32 221.309 236.023 140.192 1 38.7 ? OB5 CDL 701 l 1 
HETATM 58 C CB3 CDL . . . OA 32 220.905 237.241 139.58 1 38.7 ? CB3 CDL 701 l 1 
HETATM 59 C CB4 CDL . . . OA 32 220.38 236.921 138.174 1 38.7 ? CB4 CDL 701 l 1 
HETATM 60 O OB6 CDL . . . OA 32 220.463 238.073 137.367 1 38.7 ? OB6 CDL 701 l 1 
HETATM 61 C CB5 CDL . . . OA 32 221.607 238.116 136.518 1 38.7 ? CB5 CDL 701 l 1 
HETATM 62 O OB7 CDL . . . OA 32 222.508 237.367 136.696 1 38.7 ? OB7 CDL 701 l 1 
HETATM 63 C C51 CDL . . . OA 32 221.675 239.142 135.368 1 38.7 ? C51 CDL 701 l 1 
HETATM 64 C C52 CDL . . . OA 32 220.322 239.302 134.653 1 38.7 ? C52 CDL 701 l 1 
HETATM 65 C C53 CDL . . . OA 32 220.475 239.517 133.139 1 38.7 ? C53 CDL 701 l 1 
HETATM 66 C C54 CDL . . . OA 32 221.344 240.747 132.801 1 38.7 ? C54 CDL 701 l 1 
HETATM 67 C C55 CDL . . . OA 32 222.38 240.448 131.705 1 38.7 ? C55 CDL 701 l 1 
HETATM 68 C C56 CDL . . . OA 32 221.765 240.464 130.28 1 38.7 ? C56 CDL 701 l 1 
HETATM 69 C C57 CDL . . . OA 32 220.75 241.609 130.09 1 38.7 ? C57 CDL 701 l 1 
HETATM 70 C C58 CDL . . . OA 32 221.328 242.77 129.243 1 38.7 ? C58 CDL 701 l 1 
HETATM 71 C C59 CDL . . . OA 32 220.905 242.688 127.756 1 38.7 ? C59 CDL 701 l 1 
HETATM 72 C C60 CDL . . . OA 32 219.379 242.573 127.589 1 38.7 ? C60 CDL 701 l 1 
HETATM 73 C C61 CDL . . . OA 32 218.85 243.251 126.294 1 38.7 ? C61 CDL 701 l 1 
HETATM 74 C C62 CDL . . . OA 32 219.957 243.917 125.446 1 38.7 ? C62 CDL 701 l 1 
HETATM 75 C C63 CDL . . . OA 32 220.308 243.09 124.2 1 38.7 ? C63 CDL 701 l 1 
HETATM 76 C C64 CDL . . . OA 32 220.877 243.96 123.068 1 38.7 ? C64 CDL 701 l 1 
HETATM 77 C C65 CDL . . . OA 32 220.17 243.708 121.742 1 38.7 ? C65 CDL 701 l 1 
HETATM 78 C C66 CDL . . . OA 32 220.065 244.972 120.896 1 38.7 ? C66 CDL 701 l 1 
HETATM 79 C C67 CDL . . . OA 32 218.69 245.629 121.011 1 38.7 ? C67 CDL 701 l 1 
HETATM 80 C CB6 CDL . . . OA 32 218.927 236.473 138.273 1 38.7 ? CB6 CDL 701 l 1 
HETATM 81 O OB8 CDL . . . OA 32 218.103 237.516 137.761 1 38.7 ? OB8 CDL 701 l 1 
HETATM 82 C CB7 CDL . . . OA 32 216.874 237.067 137.22 1 38.7 ? CB7 CDL 701 l 1 
HETATM 83 O OB9 CDL . . . OA 32 215.918 236.966 137.915 1 38.7 ? OB9 CDL 701 l 1 
HETATM 84 C C71 CDL . . . OA 32 216.784 236.699 135.722 1 38.7 ? C71 CDL 701 l 1 
HETATM 85 C C72 CDL . . . OA 32 215.785 237.581 134.962 1 38.7 ? C72 CDL 701 l 1 
HETATM 86 C C73 CDL . . . OA 32 216.493 238.649 134.111 1 38.7 ? C73 CDL 701 l 1 
HETATM 87 C C74 CDL . . . OA 32 216.693 238.191 132.658 1 38.7 ? C74 CDL 701 l 1 
HETATM 88 C C75 CDL . . . OA 32 216.073 239.182 131.636 1 38.7 ? C75 CDL 701 l 1 
HETATM 89 C C76 CDL . . . OA 32 217.111 239.68 130.597 1 38.7 ? C76 CDL 701 l 1 
HETATM 90 C C77 CDL . . . OA 32 216.6 239.571 129.128 1 38.7 ? C77 CDL 701 l 1 
HETATM 91 C C78 CDL . . . OA 32 215.101 239.248 129.04 1 38.7 ? C78 CDL 701 l 1 
HETATM 92 C C79 CDL . . . OA 32 214.71 238.604 127.693 1 38.7 ? C79 CDL 701 l 1 
HETATM 93 C C80 CDL . . . OA 32 213.208 238.218 127.653 1 38.7 ? C80 CDL 701 l 1 
HETATM 94 C C81 CDL . . . OA 32 212.737 237.834 126.251 1 38.7 ? C81 CDL 701 l 1 
HETATM 95 C C82 CDL . . . OA 32 211.19 237.685 126.168 1 38.7 ? C82 CDL 701 l 1 
HETATM 96 C C83 CDL . . . OA 32 210.631 236.745 127.254 1 38.7 ? C83 CDL 701 l 1 
HETATM 97 C C84 CDL . . . OA 32 209.133 236.425 127.035 1 38.7 ? C84 CDL 701 l 1 
HETATM 98 C C85 CDL . . . OA 32 208.338 236.372 128.354 1 38.7 ? C85 CDL 701 l 1 
HETATM 99 C C86 CDL . . . OA 32 206.874 235.985 128.133 1 38.7 ? C86 CDL 701 l 1 
HETATM 100 C C87 CDL . . . OA 32 205.981 236.374 129.31 1 38.7 ? C87 CDL 701 l 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    111 
_model_server_stats.query_time_ms           369 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           100 
#