data_7VYY
#
_model_server_result.job_id            jXXNvipA1SJ7TT4T3aDIkw 
_model_server_result.datetime_utc      '2024-11-29 03:28:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vyy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    7VYY 
#
_exptl.entry_id    7VYY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.87 
_cell.angle_gamma         90 
_cell.entry_id            7VYY 
_cell.length_a            112.349 
_cell.length_b            106.052 
_cell.length_c            94.343 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VYY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LEU 25 A LEU 25 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc2 A O ASP 26 A ASP 26 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? 
metalc ? metalc3 A O ASP 28 A ASP 28 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc4 A O PHE 31 A PHE 31 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc5 C NA NA . A NA 401 1_555 E O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc6 B O LEU 25 B LEU 25 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? 
metalc ? metalc7 B O ASP 26 B ASP 26 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc8 B O ASP 28 B ASP 28 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? 
metalc ? metalc9 B O PHE 31 B PHE 31 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VYY 
_atom_sites.fract_transf_matrix[1][1]    0.008901 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006202 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009429 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 401 1 NA NA . 
D 2 NA B 1 401 2 NA NA . 
E 3 HOH A 1 501 49 HOH HOH . 
E 3 HOH A 2 502 125 HOH HOH . 
E 3 HOH A 3 503 35 HOH HOH . 
E 3 HOH A 4 504 64 HOH HOH . 
E 3 HOH A 5 505 82 HOH HOH . 
E 3 HOH A 6 506 121 HOH HOH . 
E 3 HOH A 7 507 24 HOH HOH . 
E 3 HOH A 8 508 6 HOH HOH . 
E 3 HOH A 9 509 172 HOH HOH . 
E 3 HOH A 10 510 91 HOH HOH . 
E 3 HOH A 11 511 150 HOH HOH . 
E 3 HOH A 12 512 163 HOH HOH . 
E 3 HOH A 13 513 102 HOH HOH . 
E 3 HOH A 14 514 101 HOH HOH . 
E 3 HOH A 15 515 33 HOH HOH . 
E 3 HOH A 16 516 44 HOH HOH . 
E 3 HOH A 17 517 62 HOH HOH . 
E 3 HOH A 18 518 73 HOH HOH . 
E 3 HOH A 19 519 92 HOH HOH . 
E 3 HOH A 20 520 128 HOH HOH . 
E 3 HOH A 21 521 12 HOH HOH . 
E 3 HOH A 22 522 68 HOH HOH . 
E 3 HOH A 23 523 130 HOH HOH . 
E 3 HOH A 24 524 34 HOH HOH . 
E 3 HOH A 25 525 167 HOH HOH . 
E 3 HOH A 26 526 123 HOH HOH . 
E 3 HOH A 27 527 138 HOH HOH . 
E 3 HOH A 28 528 119 HOH HOH . 
E 3 HOH A 29 529 178 HOH HOH . 
E 3 HOH A 30 530 31 HOH HOH . 
E 3 HOH A 31 531 118 HOH HOH . 
E 3 HOH A 32 532 48 HOH HOH . 
E 3 HOH A 33 533 36 HOH HOH . 
E 3 HOH A 34 534 100 HOH HOH . 
E 3 HOH A 35 535 4 HOH HOH . 
E 3 HOH A 36 536 16 HOH HOH . 
E 3 HOH A 37 537 106 HOH HOH . 
E 3 HOH A 38 538 58 HOH HOH . 
E 3 HOH A 39 539 17 HOH HOH . 
E 3 HOH A 40 540 63 HOH HOH . 
E 3 HOH A 41 541 61 HOH HOH . 
E 3 HOH A 42 542 143 HOH HOH . 
E 3 HOH A 43 543 95 HOH HOH . 
E 3 HOH A 44 544 23 HOH HOH . 
E 3 HOH A 45 545 107 HOH HOH . 
E 3 HOH A 46 546 74 HOH HOH . 
E 3 HOH A 47 547 132 HOH HOH . 
E 3 HOH A 48 548 98 HOH HOH . 
E 3 HOH A 49 549 83 HOH HOH . 
E 3 HOH A 50 550 97 HOH HOH . 
E 3 HOH A 51 551 7 HOH HOH . 
E 3 HOH A 52 552 90 HOH HOH . 
E 3 HOH A 53 553 67 HOH HOH . 
E 3 HOH A 54 554 142 HOH HOH . 
E 3 HOH A 55 555 19 HOH HOH . 
E 3 HOH A 56 556 76 HOH HOH . 
E 3 HOH A 57 557 110 HOH HOH . 
E 3 HOH A 58 558 151 HOH HOH . 
E 3 HOH A 59 559 176 HOH HOH . 
E 3 HOH A 60 560 131 HOH HOH . 
E 3 HOH A 61 561 162 HOH HOH . 
E 3 HOH A 62 562 40 HOH HOH . 
E 3 HOH A 63 563 37 HOH HOH . 
E 3 HOH A 64 564 104 HOH HOH . 
E 3 HOH A 65 565 75 HOH HOH . 
E 3 HOH A 66 566 41 HOH HOH . 
E 3 HOH A 67 567 51 HOH HOH . 
E 3 HOH A 68 568 152 HOH HOH . 
E 3 HOH A 69 569 112 HOH HOH . 
E 3 HOH A 70 570 94 HOH HOH . 
E 3 HOH A 71 571 136 HOH HOH . 
E 3 HOH A 72 572 65 HOH HOH . 
E 3 HOH A 73 573 42 HOH HOH . 
E 3 HOH A 74 574 60 HOH HOH . 
E 3 HOH A 75 575 13 HOH HOH . 
E 3 HOH A 76 576 129 HOH HOH . 
E 3 HOH A 77 577 1 HOH HOH . 
E 3 HOH A 78 578 57 HOH HOH . 
E 3 HOH A 79 579 153 HOH HOH . 
E 3 HOH A 80 580 18 HOH HOH . 
E 3 HOH A 81 581 81 HOH HOH . 
E 3 HOH A 82 582 45 HOH HOH . 
E 3 HOH A 83 583 140 HOH HOH . 
E 3 HOH A 84 584 137 HOH HOH . 
E 3 HOH A 85 585 72 HOH HOH . 
E 3 HOH A 86 586 38 HOH HOH . 
E 3 HOH A 87 587 53 HOH HOH . 
E 3 HOH A 88 588 116 HOH HOH . 
E 3 HOH A 89 589 144 HOH HOH . 
E 3 HOH A 90 590 52 HOH HOH . 
E 3 HOH A 91 591 133 HOH HOH . 
E 3 HOH A 92 592 154 HOH HOH . 
E 3 HOH A 93 593 158 HOH HOH . 
E 3 HOH A 94 594 169 HOH HOH . 
E 3 HOH A 95 595 175 HOH HOH . 
E 3 HOH A 96 596 85 HOH HOH . 
E 3 HOH A 97 597 157 HOH HOH . 
E 3 HOH A 98 598 122 HOH HOH . 
E 3 HOH A 99 599 69 HOH HOH . 
E 3 HOH A 100 600 155 HOH HOH . 
E 3 HOH A 101 601 56 HOH HOH . 
F 3 HOH B 1 501 134 HOH HOH . 
F 3 HOH B 2 502 78 HOH HOH . 
F 3 HOH B 3 503 148 HOH HOH . 
F 3 HOH B 4 504 14 HOH HOH . 
F 3 HOH B 5 505 80 HOH HOH . 
F 3 HOH B 6 506 113 HOH HOH . 
F 3 HOH B 7 507 32 HOH HOH . 
F 3 HOH B 8 508 86 HOH HOH . 
F 3 HOH B 9 509 156 HOH HOH . 
F 3 HOH B 10 510 93 HOH HOH . 
F 3 HOH B 11 511 168 HOH HOH . 
F 3 HOH B 12 512 170 HOH HOH . 
F 3 HOH B 13 513 26 HOH HOH . 
F 3 HOH B 14 514 30 HOH HOH . 
F 3 HOH B 15 515 21 HOH HOH . 
F 3 HOH B 16 516 127 HOH HOH . 
F 3 HOH B 17 517 111 HOH HOH . 
F 3 HOH B 18 518 79 HOH HOH . 
F 3 HOH B 19 519 105 HOH HOH . 
F 3 HOH B 20 520 108 HOH HOH . 
F 3 HOH B 21 521 9 HOH HOH . 
F 3 HOH B 22 522 20 HOH HOH . 
F 3 HOH B 23 523 173 HOH HOH . 
F 3 HOH B 24 524 77 HOH HOH . 
F 3 HOH B 25 525 149 HOH HOH . 
F 3 HOH B 26 526 84 HOH HOH . 
F 3 HOH B 27 527 27 HOH HOH . 
F 3 HOH B 28 528 39 HOH HOH . 
F 3 HOH B 29 529 147 HOH HOH . 
F 3 HOH B 30 530 5 HOH HOH . 
F 3 HOH B 31 531 114 HOH HOH . 
F 3 HOH B 32 532 8 HOH HOH . 
F 3 HOH B 33 533 25 HOH HOH . 
F 3 HOH B 34 534 96 HOH HOH . 
F 3 HOH B 35 535 59 HOH HOH . 
F 3 HOH B 36 536 117 HOH HOH . 
F 3 HOH B 37 537 161 HOH HOH . 
F 3 HOH B 38 538 2 HOH HOH . 
F 3 HOH B 39 539 66 HOH HOH . 
F 3 HOH B 40 540 89 HOH HOH . 
F 3 HOH B 41 541 146 HOH HOH . 
F 3 HOH B 42 542 50 HOH HOH . 
F 3 HOH B 43 543 103 HOH HOH . 
F 3 HOH B 44 544 3 HOH HOH . 
F 3 HOH B 45 545 141 HOH HOH . 
F 3 HOH B 46 546 166 HOH HOH . 
F 3 HOH B 47 547 11 HOH HOH . 
F 3 HOH B 48 548 115 HOH HOH . 
F 3 HOH B 49 549 174 HOH HOH . 
F 3 HOH B 50 550 99 HOH HOH . 
F 3 HOH B 51 551 88 HOH HOH . 
F 3 HOH B 52 552 159 HOH HOH . 
F 3 HOH B 53 553 171 HOH HOH . 
F 3 HOH B 54 554 15 HOH HOH . 
F 3 HOH B 55 555 43 HOH HOH . 
F 3 HOH B 56 556 120 HOH HOH . 
F 3 HOH B 57 557 177 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               49.418 
_atom_site.Cartn_y               -5.759 
_atom_site.Cartn_z               9.459 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        55.22 
_atom_site.pdbx_formal_charge    0 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           1 
#