data_7VZG
#
_model_server_result.job_id            R35IKkf0-VOR4PA0XUX8eQ 
_model_server_result.datetime_utc      '2024-11-04 22:43:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vzg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"QC","auth_seq_id":202}' 
#
_entry.id    7VZG 
#
_exptl.entry_id    7VZG 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              351.64 
_entity.id                          20 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IRON/SULFUR CLUSTER' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 20 RB N N 
? 20 PC N N 
? 20 QC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 111 C CYS 125 1_555 VA CAB HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
covale ? covale2 H SG CYS 6 c CYS 21 1_555 LC C11 UNL . c UNL 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.569 ? 
covale ? covale3 H SG CYS 74 c CYS 89 1_555 KC CAB HEC . c HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? 
covale ? covale4 H SG CYS 77 c CYS 92 1_555 KC CAC HEC . c HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
metalc ? metalc1 A OE1 GLU 259 A GLU 266 1_555 T MG BCL . A BCL 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc2 A SG CYS 698 A CYS 705 1_555 RB FE1 SF4 . a SF4 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc3 A OD1 ASP 725 A ASP 732 1_555 BA CA CA . A CA 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? 
metalc ? metalc4 A OD2 ASP 725 A ASP 732 1_555 BA CA CA . A CA 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? 
metalc ? metalc5 A OE1 GLU 759 A GLU 766 1_555 BA CA CA . A CA 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? 
metalc ? metalc6 A NE2 HIS 777 A HIS 784 1_555 O ZN 2GO . A 2GO 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc7 A O TYR 849 A TYR 856 1_555 BA CA CA . A CA 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? 
metalc ? metalc8 A OD1 ASP 852 A ASP 859 1_555 BA CA CA . A CA 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
metalc ? metalc9 A O GLY 853 A GLY 860 1_555 BA CA CA . A CA 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc10 BA CA CA . A CA 914 1_555 RC O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
metalc ? metalc11 RC O HOH . A HOH 1002 1_555 BB MG CLA . a CLA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc12 B NE2 HIS 115 C HIS 129 1_555 VA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc13 G OE1 GLU 259 a GLU 266 1_555 IB MG BCL . a BCL 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc14 G SG CYS 689 a CYS 696 1_555 RB FE3 SF4 . a SF4 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc15 G SG CYS 698 a CYS 705 1_555 RB FE2 SF4 . a SF4 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc16 G OD1 ASP 725 a ASP 732 1_555 QB CA CA . a CA 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? 
metalc ? metalc17 G OD2 ASP 725 a ASP 732 1_555 QB CA CA . a CA 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.137 ? 
metalc ? metalc18 G OE1 GLU 759 a GLU 766 1_555 QB CA CA . a CA 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? 
metalc ? metalc19 G NE2 HIS 777 a HIS 784 1_555 DB ZN 2GO . a 2GO 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc20 G O TYR 849 a TYR 856 1_555 QB CA CA . a CA 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc21 G OD1 ASP 852 a ASP 859 1_555 QB CA CA . a CA 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc22 G O GLY 853 a GLY 860 1_555 QB CA CA . a CA 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc23 MB MG CLA . a CLA 912 1_555 SC O HOH . a HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? 
metalc ? metalc24 QB CA CA . a CA 916 1_555 SC O HOH . a HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
metalc ? metalc25 H NE2 HIS 78 c HIS 93 1_555 KC FE HEC . c HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc26 H SD MET 119 c MET 134 1_555 KC FE HEC . c HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc27 M SG CYS 20 B CYS 93 1_555 QC FE2 SF4 . B SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc28 M SG CYS 49 B CYS 122 1_555 QC FE4 SF4 . B SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc29 M N CYS 52 B CYS 125 1_555 QC FE1 SF4 . B SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc30 M SG CYS 52 B CYS 125 1_555 QC FE1 SF4 . B SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
#
_chem_comp.formula           'Fe4 S4' 
_chem_comp.formula_weight    351.64 
_chem_comp.id                SF4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IRON/SULFUR CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VZG 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 10 2GO A 1 901 901 2GO 2GO . 
P 11 BCL A 1 902 902 BCL BCL . 
Q 11 BCL A 1 903 903 BCL BCL . 
R 11 BCL A 1 904 904 BCL BCL . 
S 11 BCL A 1 905 905 BCL BCL . 
T 11 BCL A 1 906 906 BCL BCL . 
U 11 BCL A 1 907 907 BCL BCL . 
V 11 BCL A 1 908 908 BCL BCL . 
W 11 BCL A 1 909 909 BCL BCL . 
X 12 CLA A 1 910 910 CLA CLA . 
Y 12 CLA A 1 911 911 CLA CLA . 
Z 12 CLA A 1 912 912 CLA CLA . 
AA 13 LYC A 1 913 913 LYC LYC . 
BA 14 CA A 1 914 914 CA CA . 
CA 15 85I A 1 915 915 85I 85I . 
DA 15 85I A 1 916 916 85I 85I . 
EA 15 85I A 1 917 917 85I 85I . 
FA 16 UNL A 1 918 918 UNL UNL . 
GA 16 UNL A 1 919 919 UNL UNL . 
HA 16 UNL A 1 920 920 UNL UNL . 
IA 16 UNL A 1 921 921 UNL UNL . 
JA 16 UNL A 1 922 922 UNL UNL . 
KA 16 UNL A 1 923 923 UNL UNL . 
LA 16 UNL A 1 924 924 UNL UNL . 
MA 16 UNL A 1 925 925 UNL UNL . 
NA 16 UNL A 1 926 926 UNL UNL . 
OA 16 UNL A 1 927 927 UNL UNL . 
PA 16 UNL A 1 928 928 UNL UNL . 
QA 16 UNL A 1 929 929 UNL UNL . 
RA 16 UNL A 1 930 930 UNL UNL . 
SA 12 CLA A 1 931 931 CLA CLA . 
TA 17 85N A 1 932 932 85N 85N . 
UA 12 CLA A 1 933 301 CLA CLA . 
VA 18 HEC C 1 301 302 HEC HEC . 
WA 16 UNL C 1 302 303 UNL UNL . 
XA 19 84Q E 1 101 101 84Q 84Q . 
YA 16 UNL E 1 102 102 UNL UNL . 
ZA 16 UNL E 1 103 103 UNL UNL . 
AB 17 85N G 1 101 101 85N 85N . 
BB 12 CLA a 1 901 901 CLA CLA . 
CB 17 85N a 1 902 902 85N 85N . 
DB 10 2GO a 1 903 903 2GO 2GO . 
EB 11 BCL a 1 904 904 BCL BCL . 
FB 11 BCL a 1 905 905 BCL BCL . 
GB 11 BCL a 1 906 906 BCL BCL . 
HB 11 BCL a 1 907 907 BCL BCL . 
IB 11 BCL a 1 908 908 BCL BCL . 
JB 11 BCL a 1 909 909 BCL BCL . 
KB 11 BCL a 1 910 910 BCL BCL . 
LB 11 BCL a 1 911 911 BCL BCL . 
MB 12 CLA a 1 912 912 CLA CLA . 
NB 12 CLA a 1 913 913 CLA CLA . 
OB 12 CLA a 1 914 914 CLA CLA . 
PB 12 CLA a 1 915 915 CLA CLA . 
QB 14 CA a 1 916 916 CA CA . 
RB 20 SF4 a 1 917 917 SF4 SF4 . 
SB 15 85I a 1 918 918 85I 85I . 
TB 15 85I a 1 919 919 85I 85I . 
UB 15 85I a 1 920 920 85I 85I . 
VB 19 84Q a 1 921 921 84Q 84Q . 
WB 16 UNL a 1 922 922 UNL UNL . 
XB 16 UNL a 1 923 923 UNL UNL . 
YB 16 UNL a 1 924 924 UNL UNL . 
ZB 16 UNL a 1 925 925 UNL UNL . 
AC 16 UNL a 1 926 926 UNL UNL . 
BC 16 UNL a 1 927 927 UNL UNL . 
CC 16 UNL a 1 928 928 UNL UNL . 
DC 16 UNL a 1 929 929 UNL UNL . 
EC 16 UNL a 1 930 930 UNL UNL . 
FC 16 UNL a 1 931 931 UNL UNL . 
GC 16 UNL a 1 932 932 UNL UNL . 
HC 16 UNL a 1 933 933 UNL UNL . 
IC 16 UNL a 1 934 934 UNL UNL . 
JC 13 LYC c 1 201 201 LYC LYC . 
KC 18 HEC c 1 202 202 HEC HEC . 
LC 16 UNL c 1 203 203 UNL UNL . 
MC 16 UNL e 1 101 101 UNL UNL . 
NC 16 UNL e 1 102 102 UNL UNL . 
OC 17 85N g 1 101 101 85N 85N . 
PC 20 SF4 B 1 201 201 SF4 SF4 . 
QC 20 SF4 B 1 202 202 SF4 SF4 . 
RC 21 HOH A 1 1001 1001 HOH HOH . 
RC 21 HOH A 2 1002 1002 HOH HOH . 
RC 21 HOH A 3 1003 1003 HOH HOH . 
SC 21 HOH a 1 1001 1001 HOH HOH . 
SC 21 HOH a 2 1002 1002 HOH HOH . 
SC 21 HOH a 3 1003 1003 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 SF4 . . . QC 20 133.897 71.524 125.962 1 51.48 ? FE1 SF4 202 B 1 
HETATM 2 FE FE2 SF4 . . . QC 20 133.551 72.778 123.628 1 51.48 ? FE2 SF4 202 B 1 
HETATM 3 FE FE3 SF4 . . . QC 20 131.358 72.086 125.089 1 51.48 ? FE3 SF4 202 B 1 
HETATM 4 FE FE4 SF4 . . . QC 20 132.815 70.194 123.844 1 51.48 ? FE4 SF4 202 B 1 
HETATM 5 S S1 SF4 . . . QC 20 131.647 71.847 122.843 1 51.48 ? S1 SF4 202 B 1 
HETATM 6 S S2 SF4 . . . QC 20 132.073 70.156 125.993 1 51.48 ? S2 SF4 202 B 1 
HETATM 7 S S3 SF4 . . . QC 20 134.959 71.034 123.98 1 51.48 ? S3 SF4 202 B 1 
HETATM 8 S S4 SF4 . . . QC 20 133.001 73.572 125.694 1 51.48 ? S4 SF4 202 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    91 
_model_server_stats.query_time_ms           482 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#