data_7VZR # _model_server_result.job_id -xmk87sturedVFBWW1z9FA _model_server_result.datetime_utc '2024-10-19 07:38:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vzr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PB","auth_seq_id":917}' # _entry.id 7VZR # _exptl.entry_id 7VZR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 351.64 _entity.id 18 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 18 _struct_asym.id PB _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 266 A GLU 266 1_555 R MG BCL . A BCL 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc2 A SG CYS 705 A CYS 705 1_555 PB FE1 SF4 . a SF4 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc3 A OD1 ASP 732 A ASP 732 1_555 Z CA CA . A CA 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc4 A OD2 ASP 732 A ASP 732 1_555 Z CA CA . A CA 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc5 A OE1 GLU 766 A GLU 766 1_555 Z CA CA . A CA 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc6 A NE2 HIS 784 A HIS 784 1_555 M ZN 2GO . A 2GO 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc7 A O TYR 856 A TYR 856 1_555 Z CA CA . A CA 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc8 A OD1 ASP 859 A ASP 859 1_555 Z CA CA . A CA 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc9 A O GLY 860 A GLY 860 1_555 Z CA CA . A CA 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc10 Z CA CA . A CA 914 1_555 NC O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc11 NC O HOH . A HOH 1002 1_555 ZA MG CLA . a CLA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc12 B NE2 HIS 129 C HIS 129 1_555 TA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc13 G OE1 GLU 266 a GLU 266 1_555 GB MG BCL . a BCL 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc14 G SG CYS 696 a CYS 696 1_555 PB FE3 SF4 . a SF4 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc15 G SG CYS 705 a CYS 705 1_555 PB FE2 SF4 . a SF4 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc16 G OD1 ASP 732 a ASP 732 1_555 OB CA CA . a CA 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc17 G OD2 ASP 732 a ASP 732 1_555 OB CA CA . a CA 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.137 ? metalc ? metalc18 G OE1 GLU 766 a GLU 766 1_555 OB CA CA . a CA 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc19 G NE2 HIS 784 a HIS 784 1_555 BB ZN 2GO . a 2GO 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc20 G O TYR 856 a TYR 856 1_555 OB CA CA . a CA 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc21 G OD1 ASP 859 a ASP 859 1_555 OB CA CA . a CA 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc22 G O GLY 860 a GLY 860 1_555 OB CA CA . a CA 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc23 KB MG CLA . a CLA 912 1_555 OC O HOH . a HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc24 OB CA CA . a CA 916 1_555 OC O HOH . a HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc25 H NE2 HIS 78 c HIS 93 1_555 IC FE HEC . c HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc26 H SD MET 119 c MET 134 1_555 IC FE HEC . c HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 1253 n n FE1 S3 SF4 sing 1254 n n FE1 S4 SF4 sing 1255 n n FE2 S1 SF4 sing 1256 n n FE2 S3 SF4 sing 1257 n n FE2 S4 SF4 sing 1258 n n FE3 S1 SF4 sing 1259 n n FE3 S2 SF4 sing 1260 n n FE3 S4 SF4 sing 1261 n n FE4 S1 SF4 sing 1262 n n FE4 S2 SF4 sing 1263 n n FE4 S3 SF4 sing 1264 n n # _atom_sites.entry_id 7VZR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 8 2GO A 1 901 901 2GO 2GO . N 9 BCL A 1 902 902 BCL BCL . O 9 BCL A 1 903 903 BCL BCL . P 9 BCL A 1 904 904 BCL BCL . Q 9 BCL A 1 905 905 BCL BCL . R 9 BCL A 1 906 906 BCL BCL . S 9 BCL A 1 907 907 BCL BCL . T 9 BCL A 1 908 908 BCL BCL . U 9 BCL A 1 909 909 BCL BCL . V 10 CLA A 1 910 910 CLA CLA . W 10 CLA A 1 911 911 CLA CLA . X 10 CLA A 1 912 912 CLA CLA . Y 11 LYC A 1 913 913 LYC LYC . Z 12 CA A 1 914 914 CA CA . AA 13 85I A 1 915 915 85I 85I . BA 13 85I A 1 916 916 85I 85I . CA 13 85I A 1 917 917 85I 85I . DA 14 UNL A 1 918 918 UNL UNL . EA 14 UNL A 1 919 919 UNL UNL . FA 14 UNL A 1 920 920 UNL UNL . GA 14 UNL A 1 921 921 UNL UNL . HA 14 UNL A 1 922 922 UNL UNL . IA 14 UNL A 1 923 923 UNL UNL . JA 14 UNL A 1 924 924 UNL UNL . KA 14 UNL A 1 925 925 UNL UNL . LA 14 UNL A 1 926 926 UNL UNL . MA 14 UNL A 1 927 927 UNL UNL . NA 14 UNL A 1 928 928 UNL UNL . OA 14 UNL A 1 929 929 UNL UNL . PA 14 UNL A 1 930 930 UNL UNL . QA 10 CLA A 1 931 931 CLA CLA . RA 15 85N A 1 932 932 85N 85N . SA 10 CLA A 1 933 301 CLA CLA . TA 16 HEC C 1 301 302 HEC HEC . UA 14 UNL C 1 302 303 UNL UNL . VA 17 84Q E 1 101 101 84Q 84Q . WA 14 UNL E 1 102 102 UNL UNL . XA 14 UNL E 1 103 103 UNL UNL . YA 15 85N G 1 101 101 85N 85N . ZA 10 CLA a 1 901 901 CLA CLA . AB 15 85N a 1 902 902 85N 85N . BB 8 2GO a 1 903 903 2GO 2GO . CB 9 BCL a 1 904 904 BCL BCL . DB 9 BCL a 1 905 905 BCL BCL . EB 9 BCL a 1 906 906 BCL BCL . FB 9 BCL a 1 907 907 BCL BCL . GB 9 BCL a 1 908 908 BCL BCL . HB 9 BCL a 1 909 909 BCL BCL . IB 9 BCL a 1 910 910 BCL BCL . JB 9 BCL a 1 911 911 BCL BCL . KB 10 CLA a 1 912 912 CLA CLA . LB 10 CLA a 1 913 913 CLA CLA . MB 10 CLA a 1 914 914 CLA CLA . NB 10 CLA a 1 915 915 CLA CLA . OB 12 CA a 1 916 916 CA CA . PB 18 SF4 a 1 917 917 SF4 SF4 . QB 13 85I a 1 918 918 85I 85I . RB 13 85I a 1 919 919 85I 85I . SB 13 85I a 1 920 920 85I 85I . TB 17 84Q a 1 921 921 84Q 84Q . UB 14 UNL a 1 922 922 UNL UNL . VB 14 UNL a 1 923 923 UNL UNL . WB 14 UNL a 1 924 924 UNL UNL . XB 14 UNL a 1 925 925 UNL UNL . YB 14 UNL a 1 926 926 UNL UNL . ZB 14 UNL a 1 927 927 UNL UNL . AC 14 UNL a 1 928 928 UNL UNL . BC 14 UNL a 1 929 929 UNL UNL . CC 14 UNL a 1 930 930 UNL UNL . DC 14 UNL a 1 931 931 UNL UNL . EC 14 UNL a 1 932 932 UNL UNL . FC 14 UNL a 1 933 933 UNL UNL . GC 14 UNL a 1 934 934 UNL UNL . HC 11 LYC c 1 201 201 LYC LYC . IC 16 HEC c 1 202 202 HEC HEC . JC 14 UNL c 1 203 203 UNL UNL . KC 14 UNL e 1 101 101 UNL UNL . LC 14 UNL e 1 102 102 UNL UNL . MC 15 85N g 1 101 101 85N 85N . NC 19 HOH A 1 1001 1001 HOH HOH . NC 19 HOH A 2 1002 1002 HOH HOH . NC 19 HOH A 3 1003 1003 HOH HOH . OC 19 HOH a 1 1001 1001 HOH HOH . OC 19 HOH a 2 1002 1002 HOH HOH . OC 19 HOH a 3 1003 1003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . PB 18 123.221 146.942 119.816 1 38.57 ? FE1 SF4 917 a 1 HETATM 2 FE FE2 SF4 . . . PB 18 120.665 147.284 120.605 1 38.57 ? FE2 SF4 917 a 1 HETATM 3 FE FE3 SF4 . . . PB 18 121.831 149.088 118.952 1 38.57 ? FE3 SF4 917 a 1 HETATM 4 FE FE4 SF4 . . . PB 18 122.571 148.922 121.508 1 38.57 ? FE4 SF4 917 a 1 HETATM 5 S S1 SF4 . . . PB 18 120.529 149.535 120.765 1 38.57 ? S1 SF4 917 a 1 HETATM 6 S S2 SF4 . . . PB 18 123.943 149.103 119.711 1 38.57 ? S2 SF4 917 a 1 HETATM 7 S S3 SF4 . . . PB 18 122.387 146.671 121.945 1 38.57 ? S3 SF4 917 a 1 HETATM 8 S S4 SF4 . . . PB 18 121.411 146.877 118.487 1 38.57 ? S4 SF4 917 a 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #