data_7W05
#
_model_server_result.job_id            07vGyR4c6AwkWQ6LXFa5ww 
_model_server_result.datetime_utc      '2025-04-28 00:29:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7w05 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    7W05 
#
_exptl.entry_id    7W05 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              283.241 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GUANOSINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7W05 
_cell.length_a            34.589 
_cell.length_b            46.31 
_cell.length_c            53.524 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7W05 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 83 A CYS 83 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.996 ? 
disulf ? disulf2 A SG CYS 5 A CYS 5 1_555 A SG CYS 83 A CYS 83 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.109 ? 
disulf ? disulf3 A SG CYS 7 A CYS 7 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf4 A SG CYS 47 A CYS 47 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
#
_chem_comp.formula           'C10 H13 N5 O5' 
_chem_comp.formula_weight    283.241 
_chem_comp.id                GMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GUANOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' GMP sing 129 n n 
O5' HO5' GMP sing 130 n n 
C5' C4' GMP sing 131 n n 
C5' "H5'1" GMP sing 132 n n 
C5' "H5'2" GMP sing 133 n n 
C4' O4' GMP sing 134 n n 
C4' C3' GMP sing 135 n n 
C4' H4' GMP sing 136 n n 
O4' C1' GMP sing 137 n n 
C3' O3' GMP sing 138 n n 
C3' C2' GMP sing 139 n n 
C3' H3' GMP sing 140 n n 
O3' HO3' GMP sing 141 n n 
C2' O2' GMP sing 142 n n 
C2' C1' GMP sing 143 n n 
C2' H2' GMP sing 144 n n 
O2' HO2' GMP sing 145 n n 
C1' N9 GMP sing 146 n n 
C1' H1' GMP sing 147 n n 
N9 C8 GMP sing 148 n y 
N9 C4 GMP sing 149 n y 
C8 N7 GMP doub 150 n y 
C8 H8 GMP sing 151 n n 
N7 C5 GMP sing 152 n y 
C5 C6 GMP sing 153 n n 
C5 C4 GMP doub 154 n y 
C6 O6 GMP doub 155 n n 
C6 N1 GMP sing 156 n n 
N1 C2 GMP sing 157 n n 
N1 HN1 GMP sing 158 n n 
C2 N2 GMP sing 159 n n 
C2 N3 GMP doub 160 n n 
N2 HN21 GMP sing 161 n n 
N2 HN22 GMP sing 162 n n 
N3 C4 GMP sing 163 n n 
#
_atom_sites.entry_id                     7W05 
_atom_sites.fract_transf_matrix[1][1]    0.028911 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021594 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018683 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GMP A 1 201 201 GMP GMP . 
C 3 PEG A 1 202 1 PEG PEG . 
D 4 HOH A 1 301 34 HOH HOH . 
D 4 HOH A 2 302 30 HOH HOH . 
D 4 HOH A 3 303 40 HOH HOH . 
D 4 HOH A 4 304 71 HOH HOH . 
D 4 HOH A 5 305 1 HOH HOH . 
D 4 HOH A 6 306 108 HOH HOH . 
D 4 HOH A 7 307 76 HOH HOH . 
D 4 HOH A 8 308 104 HOH HOH . 
D 4 HOH A 9 309 132 HOH HOH . 
D 4 HOH A 10 310 58 HOH HOH . 
D 4 HOH A 11 311 3 HOH HOH . 
D 4 HOH A 12 312 39 HOH HOH . 
D 4 HOH A 13 313 126 HOH HOH . 
D 4 HOH A 14 314 130 HOH HOH . 
D 4 HOH A 15 315 61 HOH HOH . 
D 4 HOH A 16 316 31 HOH HOH . 
D 4 HOH A 17 317 109 HOH HOH . 
D 4 HOH A 18 318 6 HOH HOH . 
D 4 HOH A 19 319 72 HOH HOH . 
D 4 HOH A 20 320 13 HOH HOH . 
D 4 HOH A 21 321 44 HOH HOH . 
D 4 HOH A 22 322 78 HOH HOH . 
D 4 HOH A 23 323 26 HOH HOH . 
D 4 HOH A 24 324 55 HOH HOH . 
D 4 HOH A 25 325 74 HOH HOH . 
D 4 HOH A 26 326 33 HOH HOH . 
D 4 HOH A 27 327 51 HOH HOH . 
D 4 HOH A 28 328 23 HOH HOH . 
D 4 HOH A 29 329 49 HOH HOH . 
D 4 HOH A 30 330 36 HOH HOH . 
D 4 HOH A 31 331 46 HOH HOH . 
D 4 HOH A 32 332 80 HOH HOH . 
D 4 HOH A 33 333 120 HOH HOH . 
D 4 HOH A 34 334 105 HOH HOH . 
D 4 HOH A 35 335 139 HOH HOH . 
D 4 HOH A 36 336 94 HOH HOH . 
D 4 HOH A 37 337 19 HOH HOH . 
D 4 HOH A 38 338 81 HOH HOH . 
D 4 HOH A 39 339 20 HOH HOH . 
D 4 HOH A 40 340 134 HOH HOH . 
D 4 HOH A 41 341 16 HOH HOH . 
D 4 HOH A 42 342 53 HOH HOH . 
D 4 HOH A 43 343 123 HOH HOH . 
D 4 HOH A 44 344 52 HOH HOH . 
D 4 HOH A 45 345 4 HOH HOH . 
D 4 HOH A 46 346 143 HOH HOH . 
D 4 HOH A 47 347 2 HOH HOH . 
D 4 HOH A 48 348 107 HOH HOH . 
D 4 HOH A 49 349 95 HOH HOH . 
D 4 HOH A 50 350 18 HOH HOH . 
D 4 HOH A 51 351 69 HOH HOH . 
D 4 HOH A 52 352 100 HOH HOH . 
D 4 HOH A 53 353 106 HOH HOH . 
D 4 HOH A 54 354 15 HOH HOH . 
D 4 HOH A 55 355 9 HOH HOH . 
D 4 HOH A 56 356 82 HOH HOH . 
D 4 HOH A 57 357 17 HOH HOH . 
D 4 HOH A 58 358 57 HOH HOH . 
D 4 HOH A 59 359 14 HOH HOH . 
D 4 HOH A 60 360 79 HOH HOH . 
D 4 HOH A 61 361 48 HOH HOH . 
D 4 HOH A 62 362 129 HOH HOH . 
D 4 HOH A 63 363 62 HOH HOH . 
D 4 HOH A 64 364 32 HOH HOH . 
D 4 HOH A 65 365 22 HOH HOH . 
D 4 HOH A 66 366 12 HOH HOH . 
D 4 HOH A 67 367 88 HOH HOH . 
D 4 HOH A 68 368 77 HOH HOH . 
D 4 HOH A 69 369 45 HOH HOH . 
D 4 HOH A 70 370 8 HOH HOH . 
D 4 HOH A 71 371 59 HOH HOH . 
D 4 HOH A 72 372 24 HOH HOH . 
D 4 HOH A 73 373 21 HOH HOH . 
D 4 HOH A 74 374 7 HOH HOH . 
D 4 HOH A 75 375 63 HOH HOH . 
D 4 HOH A 76 376 38 HOH HOH . 
D 4 HOH A 77 377 97 HOH HOH . 
D 4 HOH A 78 378 25 HOH HOH . 
D 4 HOH A 79 379 141 HOH HOH . 
D 4 HOH A 80 380 67 HOH HOH . 
D 4 HOH A 81 381 85 HOH HOH . 
D 4 HOH A 82 382 10 HOH HOH . 
D 4 HOH A 83 383 73 HOH HOH . 
D 4 HOH A 84 384 43 HOH HOH . 
D 4 HOH A 85 385 140 HOH HOH . 
D 4 HOH A 86 386 47 HOH HOH . 
D 4 HOH A 87 387 29 HOH HOH . 
D 4 HOH A 88 388 50 HOH HOH . 
D 4 HOH A 89 389 5 HOH HOH . 
D 4 HOH A 90 390 11 HOH HOH . 
D 4 HOH A 91 391 60 HOH HOH . 
D 4 HOH A 92 392 56 HOH HOH . 
D 4 HOH A 93 393 138 HOH HOH . 
D 4 HOH A 94 394 28 HOH HOH . 
D 4 HOH A 95 395 68 HOH HOH . 
D 4 HOH A 96 396 131 HOH HOH . 
D 4 HOH A 97 397 84 HOH HOH . 
D 4 HOH A 98 398 64 HOH HOH . 
D 4 HOH A 99 399 83 HOH HOH . 
D 4 HOH A 100 400 27 HOH HOH . 
D 4 HOH A 101 401 65 HOH HOH . 
D 4 HOH A 102 402 103 HOH HOH . 
D 4 HOH A 103 403 37 HOH HOH . 
D 4 HOH A 104 404 93 HOH HOH . 
D 4 HOH A 105 405 144 HOH HOH . 
D 4 HOH A 106 406 96 HOH HOH . 
D 4 HOH A 107 407 89 HOH HOH . 
D 4 HOH A 108 408 117 HOH HOH . 
D 4 HOH A 109 409 118 HOH HOH . 
D 4 HOH A 110 410 86 HOH HOH . 
D 4 HOH A 111 411 35 HOH HOH . 
D 4 HOH A 112 412 122 HOH HOH . 
D 4 HOH A 113 413 125 HOH HOH . 
D 4 HOH A 114 414 54 HOH HOH . 
D 4 HOH A 115 415 41 HOH HOH . 
D 4 HOH A 116 416 146 HOH HOH . 
D 4 HOH A 117 417 119 HOH HOH . 
D 4 HOH A 118 418 98 HOH HOH . 
D 4 HOH A 119 419 42 HOH HOH . 
D 4 HOH A 120 420 75 HOH HOH . 
D 4 HOH A 121 421 121 HOH HOH . 
D 4 HOH A 122 422 113 HOH HOH . 
D 4 HOH A 123 423 90 HOH HOH . 
D 4 HOH A 124 424 66 HOH HOH . 
D 4 HOH A 125 425 137 HOH HOH . 
D 4 HOH A 126 426 70 HOH HOH . 
D 4 HOH A 127 427 91 HOH HOH . 
D 4 HOH A 128 428 111 HOH HOH . 
D 4 HOH A 129 429 127 HOH HOH . 
D 4 HOH A 130 430 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' GMP . . . B 2 -1.31 8.212 -13.516 1 11.5 ? O5' GMP 201 A 1 
HETATM 2 C C5' GMP . . . B 2 -1.084 8.148 -14.932 1 11.33 ? C5' GMP 201 A 1 
HETATM 3 C C4' GMP . . . B 2 -0.781 6.734 -15.374 1 10.98 ? C4' GMP 201 A 1 
HETATM 4 O O4' GMP . . . B 2 0.516 6.337 -14.824 1 10.55 ? O4' GMP 201 A 1 
HETATM 5 C C3' GMP . . . B 2 -1.788 5.686 -14.897 1 11.04 ? C3' GMP 201 A 1 
HETATM 6 O O3' GMP . . . B 2 -1.982 4.694 -15.913 1 11.52 ? O3' GMP 201 A 1 
HETATM 7 C C2' GMP . . . B 2 -1.086 5.063 -13.691 1 10.83 ? C2' GMP 201 A 1 
HETATM 8 O O2' GMP . . . B 2 -1.478 3.732 -13.418 1 11.24 ? O2' GMP 201 A 1 
HETATM 9 C C1' GMP . . . B 2 0.376 5.134 -14.12 1 10.35 ? C1' GMP 201 A 1 
HETATM 10 N N9 GMP . . . B 2 1.362 5.102 -13.035 1 9.71 ? N9 GMP 201 A 1 
HETATM 11 C C8 GMP . . . B 2 2.313 4.147 -12.817 1 9.68 ? C8 GMP 201 A 1 
HETATM 12 N N7 GMP . . . B 2 3.015 4.436 -11.747 1 9.51 ? N7 GMP 201 A 1 
HETATM 13 C C5 GMP . . . B 2 2.511 5.591 -11.254 1 9.38 ? C5 GMP 201 A 1 
HETATM 14 C C6 GMP . . . B 2 2.911 6.388 -10.06 1 9.45 ? C6 GMP 201 A 1 
HETATM 15 O O6 GMP . . . B 2 3.799 6.103 -9.287 1 9.46 ? O6 GMP 201 A 1 
HETATM 16 N N1 GMP . . . B 2 2.145 7.535 -9.883 1 9.46 ? N1 GMP 201 A 1 
HETATM 17 C C2 GMP . . . B 2 1.068 7.891 -10.717 1 9.49 ? C2 GMP 201 A 1 
HETATM 18 N N2 GMP . . . B 2 0.356 9.071 -10.44 1 9.81 ? N2 GMP 201 A 1 
HETATM 19 N N3 GMP . . . B 2 0.694 7.161 -11.844 1 9.4 ? N3 GMP 201 A 1 
HETATM 20 C C4 GMP . . . B 2 1.483 5.989 -12.057 1 9.35 ? C4 GMP 201 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#