data_7W06 # _model_server_result.job_id YCAejlW4YfQdkTpjnnN2wQ _model_server_result.datetime_utc '2024-12-02 14:45:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7W06 # _exptl.entry_id 7W06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 130.099 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-methylidenebutanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.14 _cell.angle_gamma 90 _cell.entry_id 7W06 _cell.length_a 86.766 _cell.length_b 52.369 _cell.length_c 49.079 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -26.830835 0 41.095675 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 160 A ARG 160 1_555 A N MSE 161 A MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C MSE 161 A MSE 161 1_555 A N LEU 162 A LEU 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C PRO 166 A PRO 166 1_555 A N MSE 167 A MSE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C MSE 167 A MSE 167 1_555 A N MSE 168 A MSE 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 168 A MSE 168 1_555 A N ILE 169 A ILE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale6 A C VAL 170 A VAL 170 1_555 A N MSE 171 A MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C MSE 171 A MSE 171 1_555 A N ALA 172 A ALA 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C GLU 238 A GLU 238 1_555 A N MSE 239 A MSE 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C MSE 239 A MSE 239 1_555 A N GLY 240 A GLY 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale10 A C SER 247 A SER 247 1_555 A N MSE 248 A MSE 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C MSE 248 A MSE 248 1_555 A N SER 249 A SER 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C5 H6 O4' _chem_comp.formula_weight 130.099 _chem_comp.id ITN _chem_comp.mon_nstd_flag . _chem_comp.name '2-methylidenebutanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C5 ITN doub 173 n n O1 C1 ITN doub 174 n n C2 C3 ITN sing 175 n n C2 C1 ITN sing 176 n n C5 C3 ITN sing 177 n n C5 O3 ITN sing 178 n n C3 C4 ITN doub 179 n n C1 O2 ITN sing 180 n n C2 H1 ITN sing 181 n n C2 H2 ITN sing 182 n n O3 H3 ITN sing 183 n n C4 H4 ITN sing 184 n n C4 H5 ITN sing 185 n n O2 H6 ITN sing 186 n n # _atom_sites.entry_id 7W06 _atom_sites.fract_transf_matrix[1][1] 0.011525 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007525 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024334 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ITN A 1 301 303 ITN ITN . C 3 SO4 A 1 302 403 SO4 SO4 . D 4 CL A 1 303 501 CL CL . E 5 HOH A 1 401 155 HOH HOH . E 5 HOH A 2 402 157 HOH HOH . E 5 HOH A 3 403 105 HOH HOH . E 5 HOH A 4 404 112 HOH HOH . E 5 HOH A 5 405 45 HOH HOH . E 5 HOH A 6 406 149 HOH HOH . E 5 HOH A 7 407 92 HOH HOH . E 5 HOH A 8 408 130 HOH HOH . E 5 HOH A 9 409 121 HOH HOH . E 5 HOH A 10 410 60 HOH HOH . E 5 HOH A 11 411 102 HOH HOH . E 5 HOH A 12 412 118 HOH HOH . E 5 HOH A 13 413 164 HOH HOH . E 5 HOH A 14 414 63 HOH HOH . E 5 HOH A 15 415 166 HOH HOH . E 5 HOH A 16 416 41 HOH HOH . E 5 HOH A 17 417 74 HOH HOH . E 5 HOH A 18 418 81 HOH HOH . E 5 HOH A 19 419 42 HOH HOH . E 5 HOH A 20 420 115 HOH HOH . E 5 HOH A 21 421 108 HOH HOH . E 5 HOH A 22 422 111 HOH HOH . E 5 HOH A 23 423 33 HOH HOH . E 5 HOH A 24 424 71 HOH HOH . E 5 HOH A 25 425 72 HOH HOH . E 5 HOH A 26 426 7 HOH HOH . E 5 HOH A 27 427 143 HOH HOH . E 5 HOH A 28 428 31 HOH HOH . E 5 HOH A 29 429 27 HOH HOH . E 5 HOH A 30 430 119 HOH HOH . E 5 HOH A 31 431 28 HOH HOH . E 5 HOH A 32 432 44 HOH HOH . E 5 HOH A 33 433 137 HOH HOH . E 5 HOH A 34 434 3 HOH HOH . E 5 HOH A 35 435 127 HOH HOH . E 5 HOH A 36 436 22 HOH HOH . E 5 HOH A 37 437 8 HOH HOH . E 5 HOH A 38 438 20 HOH HOH . E 5 HOH A 39 439 58 HOH HOH . E 5 HOH A 40 440 140 HOH HOH . E 5 HOH A 41 441 163 HOH HOH . E 5 HOH A 42 442 89 HOH HOH . E 5 HOH A 43 443 52 HOH HOH . E 5 HOH A 44 444 75 HOH HOH . E 5 HOH A 45 445 16 HOH HOH . E 5 HOH A 46 446 21 HOH HOH . E 5 HOH A 47 447 10 HOH HOH . E 5 HOH A 48 448 6 HOH HOH . E 5 HOH A 49 449 12 HOH HOH . E 5 HOH A 50 450 55 HOH HOH . E 5 HOH A 51 451 9 HOH HOH . E 5 HOH A 52 452 57 HOH HOH . E 5 HOH A 53 453 15 HOH HOH . E 5 HOH A 54 454 24 HOH HOH . E 5 HOH A 55 455 138 HOH HOH . E 5 HOH A 56 456 79 HOH HOH . E 5 HOH A 57 457 96 HOH HOH . E 5 HOH A 58 458 13 HOH HOH . E 5 HOH A 59 459 162 HOH HOH . E 5 HOH A 60 460 53 HOH HOH . E 5 HOH A 61 461 107 HOH HOH . E 5 HOH A 62 462 25 HOH HOH . E 5 HOH A 63 463 47 HOH HOH . E 5 HOH A 64 464 142 HOH HOH . E 5 HOH A 65 465 18 HOH HOH . E 5 HOH A 66 466 131 HOH HOH . E 5 HOH A 67 467 101 HOH HOH . E 5 HOH A 68 468 17 HOH HOH . E 5 HOH A 69 469 141 HOH HOH . E 5 HOH A 70 470 49 HOH HOH . E 5 HOH A 71 471 94 HOH HOH . E 5 HOH A 72 472 34 HOH HOH . E 5 HOH A 73 473 100 HOH HOH . E 5 HOH A 74 474 128 HOH HOH . E 5 HOH A 75 475 32 HOH HOH . E 5 HOH A 76 476 80 HOH HOH . E 5 HOH A 77 477 133 HOH HOH . E 5 HOH A 78 478 97 HOH HOH . E 5 HOH A 79 479 14 HOH HOH . E 5 HOH A 80 480 51 HOH HOH . E 5 HOH A 81 481 43 HOH HOH . E 5 HOH A 82 482 11 HOH HOH . E 5 HOH A 83 483 82 HOH HOH . E 5 HOH A 84 484 23 HOH HOH . E 5 HOH A 85 485 40 HOH HOH . E 5 HOH A 86 486 77 HOH HOH . E 5 HOH A 87 487 30 HOH HOH . E 5 HOH A 88 488 123 HOH HOH . E 5 HOH A 89 489 84 HOH HOH . E 5 HOH A 90 490 19 HOH HOH . E 5 HOH A 91 491 103 HOH HOH . E 5 HOH A 92 492 136 HOH HOH . E 5 HOH A 93 493 109 HOH HOH . E 5 HOH A 94 494 117 HOH HOH . E 5 HOH A 95 495 110 HOH HOH . E 5 HOH A 96 496 104 HOH HOH . E 5 HOH A 97 497 48 HOH HOH . E 5 HOH A 98 498 59 HOH HOH . E 5 HOH A 99 499 165 HOH HOH . E 5 HOH A 100 500 70 HOH HOH . E 5 HOH A 101 501 158 HOH HOH . E 5 HOH A 102 502 66 HOH HOH . E 5 HOH A 103 503 139 HOH HOH . E 5 HOH A 104 504 106 HOH HOH . E 5 HOH A 105 505 54 HOH HOH . E 5 HOH A 106 506 125 HOH HOH . E 5 HOH A 107 507 36 HOH HOH . E 5 HOH A 108 508 148 HOH HOH . E 5 HOH A 109 509 69 HOH HOH . E 5 HOH A 110 510 50 HOH HOH . E 5 HOH A 111 511 37 HOH HOH . E 5 HOH A 112 512 64 HOH HOH . E 5 HOH A 113 513 161 HOH HOH . E 5 HOH A 114 514 116 HOH HOH . E 5 HOH A 115 515 132 HOH HOH . E 5 HOH A 116 516 39 HOH HOH . E 5 HOH A 117 517 152 HOH HOH . E 5 HOH A 118 518 134 HOH HOH . E 5 HOH A 119 519 46 HOH HOH . E 5 HOH A 120 520 120 HOH HOH . E 5 HOH A 121 521 56 HOH HOH . E 5 HOH A 122 522 135 HOH HOH . E 5 HOH A 123 523 145 HOH HOH . E 5 HOH A 124 524 38 HOH HOH . E 5 HOH A 125 525 129 HOH HOH . E 5 HOH A 126 526 86 HOH HOH . E 5 HOH A 127 527 99 HOH HOH . E 5 HOH A 128 528 113 HOH HOH . E 5 HOH A 129 529 76 HOH HOH . E 5 HOH A 130 530 95 HOH HOH . E 5 HOH A 131 531 151 HOH HOH . E 5 HOH A 132 532 68 HOH HOH . E 5 HOH A 133 533 62 HOH HOH . E 5 HOH A 134 534 85 HOH HOH . E 5 HOH A 135 535 154 HOH HOH . E 5 HOH A 136 536 126 HOH HOH . E 5 HOH A 137 537 90 HOH HOH . E 5 HOH A 138 538 122 HOH HOH . E 5 HOH A 139 539 67 HOH HOH . E 5 HOH A 140 540 65 HOH HOH . E 5 HOH A 141 541 91 HOH HOH . E 5 HOH A 142 542 147 HOH HOH . E 5 HOH A 143 543 78 HOH HOH . E 5 HOH A 144 544 150 HOH HOH . E 5 HOH A 145 545 88 HOH HOH . E 5 HOH A 146 546 160 HOH HOH . E 5 HOH A 147 547 83 HOH HOH . E 5 HOH A 148 548 159 HOH HOH . E 5 HOH A 149 549 156 HOH HOH . E 5 HOH A 150 550 61 HOH HOH . E 5 HOH A 151 551 93 HOH HOH . E 5 HOH A 152 552 73 HOH HOH . E 5 HOH A 153 553 124 HOH HOH . E 5 HOH A 154 554 87 HOH HOH . E 5 HOH A 155 555 144 HOH HOH . E 5 HOH A 156 556 153 HOH HOH . E 5 HOH A 157 557 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ITN . . . B 2 -20.477 15.788 29.169 1 19.06 ? C1 ITN 301 A 1 HETATM 2 C C2 ITN . . . B 2 -21.359 16.764 28.398 1 17.45 ? C2 ITN 301 A 1 HETATM 3 C C3 ITN . . . B 2 -20.54 17.502 27.335 1 17.77 ? C3 ITN 301 A 1 HETATM 4 C C5 ITN . . . B 2 -19.289 18.254 27.732 1 19.04 ? C5 ITN 301 A 1 HETATM 5 O O3 ITN . . . B 2 -19.021 18.412 28.96 1 14.85 ? O3 ITN 301 A 1 HETATM 6 O O4 ITN . . . B 2 -18.53 18.733 26.832 1 14.85 ? O4 ITN 301 A 1 HETATM 7 C C4 ITN . . . B 2 -20.955 17.502 26.08 1 17.47 ? C4 ITN 301 A 1 HETATM 8 O O1 ITN . . . B 2 -19.537 15.184 28.598 1 14.85 ? O1 ITN 301 A 1 HETATM 9 O O2 ITN . . . B 2 -20.724 15.605 30.384 1 14.85 ? O2 ITN 301 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 9 #