data_7W0Z # _model_server_result.job_id FGTxCv3e0kPh6rOdGW2mUw _model_server_result.datetime_utc '2024-11-05 21:27:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w0z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7W0Z # _exptl.entry_id 7W0Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.508 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(1R,2S,4R,6R,7R,10S,11S,14S,16R)-14-hydroxy-7,11-dimethyl-3-oxapentacyclo[8.8.0.02,4.02,7.011,16]octadecan-6-yl]pyran-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.92 _cell.angle_gamma 90 _cell.entry_id 7W0Z _cell.length_a 51.026 _cell.length_b 76.553 _cell.length_c 63.553 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W0Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H32 O4' _chem_comp.formula_weight 384.508 _chem_comp.id 6JI _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(1R,2S,4R,6R,7R,10S,11S,14S,16R)-14-hydroxy-7,11-dimethyl-3-oxapentacyclo[8.8.0.02,4.02,7.011,16]octadecan-6-yl]pyran-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Resibufogenin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 6JI sing 1 n n C9 C10 6JI sing 2 n n C8 C7 6JI sing 3 n n O1 C5 6JI sing 4 n n C7 C6 6JI sing 5 n n C7 C2 6JI sing 6 n n C6 C5 6JI sing 7 n n O4 C23 6JI sing 8 n n O4 C24 6JI sing 9 n n C5 C4 6JI sing 10 n n C10 C24 6JI sing 11 n n C10 C11 6JI sing 12 n n C23 C24 6JI sing 13 n n C23 C22 6JI sing 14 n n C1 C2 6JI sing 15 n n C24 C14 6JI sing 16 n n C2 C11 6JI sing 17 n n C2 C3 6JI sing 18 n n C11 C12 6JI sing 19 n n C15 C14 6JI sing 20 n n C4 C3 6JI sing 21 n n C22 C16 6JI sing 22 n n C18 C19 6JI doub 23 n n C18 C17 6JI sing 24 n n C14 C16 6JI sing 25 n n C14 C13 6JI sing 26 n n C19 C20 6JI sing 27 n n C16 C17 6JI sing 28 n n C12 C13 6JI sing 29 n n C17 C21 6JI doub 30 n n C20 O2 6JI doub 31 n n C20 O3 6JI sing 32 n n C21 O3 6JI sing 33 n n C4 H1 6JI sing 34 n n C4 H2 6JI sing 35 n n C3 H3 6JI sing 36 n n C3 H4 6JI sing 37 n n C1 H5 6JI sing 38 n n C1 H6 6JI sing 39 n n C1 H7 6JI sing 40 n n O1 H8 6JI sing 41 n n C10 H9 6JI sing 42 n n C11 H10 6JI sing 43 n n C12 H11 6JI sing 44 n n C12 H12 6JI sing 45 n n C13 H13 6JI sing 46 n n C13 H14 6JI sing 47 n n C15 H15 6JI sing 48 n n C15 H16 6JI sing 49 n n C15 H17 6JI sing 50 n n C16 H18 6JI sing 51 n n C18 H19 6JI sing 52 n n C19 H20 6JI sing 53 n n C21 H21 6JI sing 54 n n C22 H22 6JI sing 55 n n C22 H23 6JI sing 56 n n C23 H24 6JI sing 57 n n C5 H25 6JI sing 58 n n C6 H26 6JI sing 59 n n C6 H27 6JI sing 60 n n C7 H28 6JI sing 61 n n C8 H29 6JI sing 62 n n C8 H30 6JI sing 63 n n C9 H31 6JI sing 64 n n C9 H32 6JI sing 65 n n # _atom_sites.entry_id 7W0Z _atom_sites.fract_transf_matrix[1][1] 0.019598 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00238 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 501 501 UDP UDP . C 3 6JI A 1 502 502 6JI RES . D 4 HOH A 1 601 43 HOH HOH . D 4 HOH A 2 602 22 HOH HOH . D 4 HOH A 3 603 17 HOH HOH . D 4 HOH A 4 604 37 HOH HOH . D 4 HOH A 5 605 23 HOH HOH . D 4 HOH A 6 606 40 HOH HOH . D 4 HOH A 7 607 2 HOH HOH . D 4 HOH A 8 608 11 HOH HOH . D 4 HOH A 9 609 25 HOH HOH . D 4 HOH A 10 610 3 HOH HOH . D 4 HOH A 11 611 5 HOH HOH . D 4 HOH A 12 612 1 HOH HOH . D 4 HOH A 13 613 6 HOH HOH . D 4 HOH A 14 614 4 HOH HOH . D 4 HOH A 15 615 21 HOH HOH . D 4 HOH A 16 616 18 HOH HOH . D 4 HOH A 17 617 13 HOH HOH . D 4 HOH A 18 618 33 HOH HOH . D 4 HOH A 19 619 77 HOH HOH . D 4 HOH A 20 620 71 HOH HOH . D 4 HOH A 21 621 24 HOH HOH . D 4 HOH A 22 622 20 HOH HOH . D 4 HOH A 23 623 85 HOH HOH . D 4 HOH A 24 624 8 HOH HOH . D 4 HOH A 25 625 42 HOH HOH . D 4 HOH A 26 626 35 HOH HOH . D 4 HOH A 27 627 19 HOH HOH . D 4 HOH A 28 628 98 HOH HOH . D 4 HOH A 29 629 10 HOH HOH . D 4 HOH A 30 630 16 HOH HOH . D 4 HOH A 31 631 36 HOH HOH . D 4 HOH A 32 632 293 HOH HOH . D 4 HOH A 33 633 12 HOH HOH . D 4 HOH A 34 634 7 HOH HOH . D 4 HOH A 35 635 14 HOH HOH . D 4 HOH A 36 636 28 HOH HOH . D 4 HOH A 37 637 272 HOH HOH . D 4 HOH A 38 638 30 HOH HOH . D 4 HOH A 39 639 26 HOH HOH . D 4 HOH A 40 640 39 HOH HOH . D 4 HOH A 41 641 53 HOH HOH . D 4 HOH A 42 642 27 HOH HOH . D 4 HOH A 43 643 45 HOH HOH . D 4 HOH A 44 644 38 HOH HOH . D 4 HOH A 45 645 99 HOH HOH . D 4 HOH A 46 646 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 6JI . . . C 3 28.116 37.221 44.098 1 66.74 ? O4 6JI 502 A 1 HETATM 2 C C4 6JI . . . C 3 30.272 30.177 45.7 1 41.73 ? C4 6JI 502 A 1 HETATM 3 C C3 6JI . . . C 3 29.568 31.447 46.17 1 46.19 ? C3 6JI 502 A 1 HETATM 4 O O3 6JI . . . C 3 29.407 40.92 48.703 1 86.43 ? O3 6JI 502 A 1 HETATM 5 C C2 6JI . . . C 3 29.694 32.603 45.16 1 51.06 ? C2 6JI 502 A 1 HETATM 6 O O2 6JI . . . C 3 29.608 43.012 48.099 1 83.95 ? O2 6JI 502 A 1 HETATM 7 C C1 6JI . . . C 3 31.185 32.973 45.027 1 44.4 ? C1 6JI 502 A 1 HETATM 8 O O1 6JI . . . C 3 30.731 29.34 43.464 1 39.88 ? O1 6JI 502 A 1 HETATM 9 C C10 6JI . . . C 3 29.059 34.933 44.51 1 55.07 ? C10 6JI 502 A 1 HETATM 10 C C11 6JI . . . C 3 28.846 33.841 45.568 1 53.2 ? C11 6JI 502 A 1 HETATM 11 C C12 6JI . . . C 3 29.022 34.368 47.003 1 45.91 ? C12 6JI 502 A 1 HETATM 12 C C13 6JI . . . C 3 29.789 35.701 47.11 1 55.75 ? C13 6JI 502 A 1 HETATM 13 C C14 6JI . . . C 3 29.238 36.854 46.24 1 64.55 ? C14 6JI 502 A 1 HETATM 14 C C15 6JI . . . C 3 30.386 37.713 45.693 1 61.99 ? C15 6JI 502 A 1 HETATM 15 C C16 6JI . . . C 3 28.16 37.791 46.918 1 71.06 ? C16 6JI 502 A 1 HETATM 16 C C17 6JI . . . C 3 28.555 39.227 47.186 1 76.43 ? C17 6JI 502 A 1 HETATM 17 C C18 6JI . . . C 3 28.385 40.214 46.222 1 78.77 ? C18 6JI 502 A 1 HETATM 18 C C19 6JI . . . C 3 28.74 41.532 46.471 1 83.81 ? C19 6JI 502 A 1 HETATM 19 C C20 6JI . . . C 3 29.267 41.909 47.749 1 86.19 ? C20 6JI 502 A 1 HETATM 20 C C21 6JI . . . C 3 29.06 39.613 48.442 1 80.3 ? C21 6JI 502 A 1 HETATM 21 C C22 6JI . . . C 3 26.838 37.616 46.143 1 72.78 ? C22 6JI 502 A 1 HETATM 22 C C23 6JI . . . C 3 27.117 36.685 44.994 1 67.98 ? C23 6JI 502 A 1 HETATM 23 C C24 6JI . . . C 3 28.494 36.207 45.08 1 64.38 ? C24 6JI 502 A 1 HETATM 24 C C5 6JI . . . C 3 29.685 29.658 44.403 1 43.51 ? C5 6JI 502 A 1 HETATM 25 C C6 6JI . . . C 3 28.702 30.645 43.797 1 42.3 ? C6 6JI 502 A 1 HETATM 26 C C7 6JI . . . C 3 29.159 32.11 43.785 1 44.19 ? C7 6JI 502 A 1 HETATM 27 C C8 6JI . . . C 3 28.043 32.999 43.229 1 47.21 ? C8 6JI 502 A 1 HETATM 28 C C9 6JI . . . C 3 28.392 34.487 43.211 1 49.39 ? C9 6JI 502 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #