data_7W10 # _model_server_result.job_id eXFx6jwAZdr1BxP8tqk-0w _model_server_result.datetime_utc '2024-11-28 06:55:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 7W10 # _exptl.entry_id 7W10 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.524 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description bufalin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.572 _cell.angle_gamma 90 _cell.entry_id 7W10 _cell.length_a 53.178 _cell.length_b 74.64 _cell.length_c 63.609 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H34 O4' _chem_comp.formula_weight 386.524 _chem_comp.id BUF _chem_comp.mon_nstd_flag . _chem_comp.name bufalin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C3 BUF sing 70 n n C4 C3 BUF sing 71 n n C4 C5 BUF sing 72 n n C3 C2 BUF sing 73 n n C5 C6 BUF sing 74 n n C5 C10 BUF sing 75 n n C6 C7 BUF sing 76 n n C19 C10 BUF sing 77 n n C1 C10 BUF sing 78 n n C1 C2 BUF sing 79 n n C10 C9 BUF sing 80 n n C7 C8 BUF sing 81 n n C9 C8 BUF sing 82 n n C9 C11 BUF sing 83 n n C8 C14 BUF sing 84 n n C11 C12 BUF sing 85 n n C14 O14 BUF sing 86 n n C14 C15 BUF sing 87 n n C14 C13 BUF sing 88 n n C15 C16 BUF sing 89 n n C12 C13 BUF sing 90 n n C13 C18 BUF sing 91 n n C13 C17 BUF sing 92 n n C16 C17 BUF sing 93 n n C17 C20 BUF sing 94 n n C22 C20 BUF sing 95 n n C22 C23 BUF doub 96 n n C20 C21 BUF doub 97 n n C23 C24 BUF sing 98 n n C21 O21 BUF sing 99 n n C24 O21 BUF sing 100 n n C24 O24 BUF doub 101 n n C18 H1 BUF sing 102 n n C18 H2 BUF sing 103 n n C18 H3 BUF sing 104 n n C12 H4 BUF sing 105 n n C12 H5 BUF sing 106 n n C11 H6 BUF sing 107 n n C11 H7 BUF sing 108 n n C9 H8 BUF sing 109 n n C19 H9 BUF sing 110 n n C19 H10 BUF sing 111 n n C19 H11 BUF sing 112 n n C1 H12 BUF sing 113 n n C1 H13 BUF sing 114 n n C2 H14 BUF sing 115 n n C2 H15 BUF sing 116 n n C3 H16 BUF sing 117 n n O3 H17 BUF sing 118 n n C4 H18 BUF sing 119 n n C4 H19 BUF sing 120 n n C5 H20 BUF sing 121 n n C6 H21 BUF sing 122 n n C6 H22 BUF sing 123 n n C7 H23 BUF sing 124 n n C7 H24 BUF sing 125 n n C8 H25 BUF sing 126 n n O14 H26 BUF sing 127 n n C15 H27 BUF sing 128 n n C15 H28 BUF sing 129 n n C16 H29 BUF sing 130 n n C16 H30 BUF sing 131 n n C17 H31 BUF sing 132 n n C22 H32 BUF sing 133 n n C23 H33 BUF sing 134 n n C21 H34 BUF sing 135 n n # _atom_sites.entry_id 7W10 _atom_sites.fract_transf_matrix[1][1] 0.018805 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001835 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013398 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 501 501 UDP UDP . C 3 TRS A 1 502 701 TRS TRS . D 4 BUF A 1 503 702 BUF BUF . E 5 HOH A 1 601 7 HOH HOH . E 5 HOH A 2 602 3 HOH HOH . E 5 HOH A 3 603 2 HOH HOH . E 5 HOH A 4 604 12 HOH HOH . E 5 HOH A 5 605 10 HOH HOH . E 5 HOH A 6 606 9 HOH HOH . E 5 HOH A 7 607 153 HOH HOH . E 5 HOH A 8 608 5 HOH HOH . E 5 HOH A 9 609 4 HOH HOH . E 5 HOH A 10 610 1 HOH HOH . E 5 HOH A 11 611 14 HOH HOH . E 5 HOH A 12 612 25 HOH HOH . E 5 HOH A 13 613 30 HOH HOH . E 5 HOH A 14 614 46 HOH HOH . E 5 HOH A 15 615 8 HOH HOH . E 5 HOH A 16 616 13 HOH HOH . E 5 HOH A 17 617 16 HOH HOH . E 5 HOH A 18 618 39 HOH HOH . E 5 HOH A 19 619 23 HOH HOH . E 5 HOH A 20 620 21 HOH HOH . E 5 HOH A 21 621 92 HOH HOH . E 5 HOH A 22 622 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 BUF . . . D 4 -7.095 -0.252 -12.297 1 65.26 ? C18 BUF 503 A 1 HETATM 2 C C13 BUF . . . D 4 -8.3 -0.229 -13.245 1 65.91 ? C13 BUF 503 A 1 HETATM 3 C C12 BUF . . . D 4 -9.558 -0.716 -12.529 1 66.85 ? C12 BUF 503 A 1 HETATM 4 C C11 BUF . . . D 4 -9.569 -2.218 -12.303 1 61.06 ? C11 BUF 503 A 1 HETATM 5 C C9 BUF . . . D 4 -9.318 -3.066 -13.559 1 61.26 ? C9 BUF 503 A 1 HETATM 6 C C10 BUF . . . D 4 -9.43 -4.58 -13.225 1 57.74 ? C10 BUF 503 A 1 HETATM 7 C C19 BUF . . . D 4 -8.521 -4.982 -12.047 1 56.72 ? C19 BUF 503 A 1 HETATM 8 C C1 BUF . . . D 4 -10.876 -4.965 -12.834 1 55.85 ? C1 BUF 503 A 1 HETATM 9 C C2 BUF . . . D 4 -11.079 -6.445 -12.518 1 50.06 ? C2 BUF 503 A 1 HETATM 10 C C3 BUF . . . D 4 -10.365 -7.32 -13.525 1 55.51 ? C3 BUF 503 A 1 HETATM 11 O O3 BUF . . . D 4 -9.208 -7.895 -12.886 1 56.92 ? O3 BUF 503 A 1 HETATM 12 C C4 BUF . . . D 4 -9.977 -6.541 -14.758 1 54.36 ? C4 BUF 503 A 1 HETATM 13 C C5 BUF . . . D 4 -9.05 -5.356 -14.503 1 55.1 ? C5 BUF 503 A 1 HETATM 14 C C6 BUF . . . D 4 -8.985 -4.462 -15.736 1 57.04 ? C6 BUF 503 A 1 HETATM 15 C C7 BUF . . . D 4 -7.903 -3.39 -15.593 1 59.86 ? C7 BUF 503 A 1 HETATM 16 C C8 BUF . . . D 4 -8.044 -2.601 -14.288 1 63.4 ? C8 BUF 503 A 1 HETATM 17 C C14 BUF . . . D 4 -8.079 -1.078 -14.53 1 66.04 ? C14 BUF 503 A 1 HETATM 18 O O14 BUF . . . D 4 -6.816 -0.696 -15.123 1 63.08 ? O14 BUF 503 A 1 HETATM 19 C C15 BUF . . . D 4 -9.196 -0.522 -15.418 1 66.49 ? C15 BUF 503 A 1 HETATM 20 C C16 BUF . . . D 4 -9.295 0.984 -15.076 1 68.74 ? C16 BUF 503 A 1 HETATM 21 C C17 BUF . . . D 4 -8.515 1.214 -13.776 1 70.09 ? C17 BUF 503 A 1 HETATM 22 C C20 BUF . . . D 4 -7.32 2.13 -13.949 1 73.06 ? C20 BUF 503 A 1 HETATM 23 C C22 BUF . . . D 4 -6.717 2.374 -15.177 1 72.59 ? C22 BUF 503 A 1 HETATM 24 C C23 BUF . . . D 4 -5.652 3.256 -15.278 1 73.9 ? C23 BUF 503 A 1 HETATM 25 C C24 BUF . . . D 4 -5.15 3.92 -14.106 1 73.39 ? C24 BUF 503 A 1 HETATM 26 O O24 BUF . . . D 4 -4.224 4.69 -14.051 1 75.7 ? O24 BUF 503 A 1 HETATM 27 O O21 BUF . . . D 4 -5.768 3.674 -12.902 1 75.12 ? O21 BUF 503 A 1 HETATM 28 C C21 BUF . . . D 4 -6.831 2.82 -12.828 1 73.11 ? C21 BUF 503 A 1 HETATM 29 H H1 BUF . . . D 4 -6.297 0.037 -12.775 1 78.18 ? H1 BUF 503 A 1 HETATM 30 H H2 BUF . . . D 4 -6.96 -1.157 -11.962 1 78.18 ? H2 BUF 503 A 1 HETATM 31 H H3 BUF . . . D 4 -7.257 0.348 -11.548 1 78.18 ? H3 BUF 503 A 1 HETATM 32 H H4 BUF . . . D 4 -9.625 -0.266 -11.67 1 80.1 ? H4 BUF 503 A 1 HETATM 33 H H5 BUF . . . D 4 -10.335 -0.47 -13.058 1 80.1 ? H5 BUF 503 A 1 HETATM 34 H H6 BUF . . . D 4 -8.884 -2.437 -11.639 1 73.14 ? H6 BUF 503 A 1 HETATM 35 H H7 BUF . . . D 4 -10.438 -2.469 -11.928 1 73.14 ? H7 BUF 503 A 1 HETATM 36 H H8 BUF . . . D 4 -10.005 -2.886 -14.241 1 73.38 ? H8 BUF 503 A 1 HETATM 37 H H9 BUF . . . D 4 -8.897 -4.642 -11.21 1 67.93 ? H9 BUF 503 A 1 HETATM 38 H H10 BUF . . . D 4 -7.628 -4.604 -12.177 1 67.93 ? H10 BUF 503 A 1 HETATM 39 H H11 BUF . . . D 4 -8.456 -5.957 -12 1 67.93 ? H11 BUF 503 A 1 HETATM 40 H H12 BUF . . . D 4 -11.134 -4.445 -12.055 1 66.89 ? H12 BUF 503 A 1 HETATM 41 H H13 BUF . . . D 4 -11.469 -4.721 -13.563 1 66.89 ? H13 BUF 503 A 1 HETATM 42 H H14 BUF . . . D 4 -12.027 -6.649 -12.53 1 59.94 ? H14 BUF 503 A 1 HETATM 43 H H15 BUF . . . D 4 -10.739 -6.634 -11.631 1 59.94 ? H15 BUF 503 A 1 HETATM 44 H H16 BUF . . . D 4 -10.958 -8.03 -13.82 1 66.48 ? H16 BUF 503 A 1 HETATM 45 H H17 BUF . . . D 4 -9.445 -8.406 -12.263 1 68.17 ? H17 BUF 503 A 1 HETATM 46 H H18 BUF . . . D 4 -10.784 -6.212 -15.177 1 65.1 ? H18 BUF 503 A 1 HETATM 47 H H19 BUF . . . D 4 -9.541 -7.144 -15.375 1 65.1 ? H19 BUF 503 A 1 HETATM 48 H H20 BUF . . . D 4 -8.143 -5.704 -14.353 1 65.99 ? H20 BUF 503 A 1 HETATM 49 H H21 BUF . . . D 4 -9.854 -4.031 -15.869 1 68.32 ? H21 BUF 503 A 1 HETATM 50 H H22 BUF . . . D 4 -8.796 -5.011 -16.524 1 68.32 ? H22 BUF 503 A 1 HETATM 51 H H23 BUF . . . D 4 -7.96 -2.779 -16.342 1 71.7 ? H23 BUF 503 A 1 HETATM 52 H H24 BUF . . . D 4 -7.032 -3.812 -15.617 1 71.7 ? H24 BUF 503 A 1 HETATM 53 H H25 BUF . . . D 4 -7.244 -2.795 -13.74 1 75.95 ? H25 BUF 503 A 1 HETATM 54 H H26 BUF . . . D 4 -6.191 -1.056 -14.686 1 75.56 ? H26 BUF 503 A 1 HETATM 55 H H27 BUF . . . D 4 -8.978 -0.647 -16.359 1 79.66 ? H27 BUF 503 A 1 HETATM 56 H H28 BUF . . . D 4 -10.038 -0.973 -15.23 1 79.66 ? H28 BUF 503 A 1 HETATM 57 H H29 BUF . . . D 4 -8.907 1.521 -15.8 1 82.36 ? H29 BUF 503 A 1 HETATM 58 H H30 BUF . . . D 4 -10.233 1.242 -14.956 1 82.36 ? H30 BUF 503 A 1 HETATM 59 H H31 BUF . . . D 4 -9.062 1.647 -13.088 1 83.98 ? H31 BUF 503 A 1 HETATM 60 H H32 BUF . . . D 4 -7.037 1.935 -15.948 1 86.98 ? H32 BUF 503 A 1 HETATM 61 H H33 BUF . . . D 4 -5.249 3.425 -16.124 1 88.55 ? H33 BUF 503 A 1 HETATM 62 H H34 BUF . . . D 4 -7.247 2.695 -11.989 1 87.61 ? H34 BUF 503 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 62 #