data_7W11 # _model_server_result.job_id iF3Eyy6bLaiZn97ueb2DHQ _model_server_result.datetime_utc '2024-11-24 23:19:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w11 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 7W11 # _exptl.entry_id 7W11 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 374.514 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DIGITOXIGENIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.194 _cell.angle_gamma 90 _cell.entry_id 7W11 _cell.length_a 50.753 _cell.length_b 76.533 _cell.length_c 63.21 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W11 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id C1 _struct_conn.ptnr1_label_comp_id GLC _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLC _struct_conn.ptnr1_auth_seq_id 502 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id O32 _struct_conn.ptnr2_label_comp_id DTX _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DTX _struct_conn.ptnr2_auth_seq_id 503 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.417 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H34 O4' _chem_comp.formula_weight 374.514 _chem_comp.id DTX _chem_comp.mon_nstd_flag . _chem_comp.name DIGITOXIGENIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(3,14-DIHYDROXY-10,13-DIMETHYL-HEXADECAHYDRO-CYCLOPENTA[A]PHENANTHREN-17-YL)-5H-FURAN-2-ONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C23 DTX doub 83 n n C23 C22 DTX sing 84 n n C23 O21 DTX sing 85 n n C22 C20 DTX doub 86 n n C22 H22 DTX sing 87 n n O21 C21 DTX sing 88 n n C21 C20 DTX sing 89 n n C21 H211 DTX sing 90 n n C21 H212 DTX sing 91 n n C20 C17 DTX sing 92 n n C17 C16 DTX sing 93 n n C17 C13 DTX sing 94 n n C17 H17 DTX sing 95 n n C16 C15 DTX sing 96 n n C16 H161 DTX sing 97 n n C16 H162 DTX sing 98 n n C13 C12 DTX sing 99 n n C13 C18 DTX sing 100 n n C13 C14 DTX sing 101 n n C12 C11 DTX sing 102 n n C12 H121 DTX sing 103 n n C12 H122 DTX sing 104 n n C11 C9 DTX sing 105 n n C11 H111 DTX sing 106 n n C11 H112 DTX sing 107 n n C18 H181 DTX sing 108 n n C18 H182 DTX sing 109 n n C18 H183 DTX sing 110 n n C14 C15 DTX sing 111 n n C14 O14 DTX sing 112 n n C14 C8 DTX sing 113 n n C15 H151 DTX sing 114 n n C15 H152 DTX sing 115 n n O14 H14O DTX sing 116 n n C8 C7 DTX sing 117 n n C8 C9 DTX sing 118 n n C8 HC8 DTX sing 119 n n C7 C6 DTX sing 120 n n C7 HC71 DTX sing 121 n n C7 HC72 DTX sing 122 n n C9 C10 DTX sing 123 n n C9 HC9 DTX sing 124 n n C10 C1 DTX sing 125 n n C10 C19 DTX sing 126 n n C10 C5 DTX sing 127 n n C1 C2 DTX sing 128 n n C1 HC11 DTX sing 129 n n C1 HC12 DTX sing 130 n n C19 H191 DTX sing 131 n n C19 H192 DTX sing 132 n n C19 H193 DTX sing 133 n n C5 C6 DTX sing 134 n n C5 C4 DTX sing 135 n n C5 HC5 DTX sing 136 n n C6 HC61 DTX sing 137 n n C6 HC62 DTX sing 138 n n C4 C3 DTX sing 139 n n C4 HC41 DTX sing 140 n n C4 HC42 DTX sing 141 n n C3 C2 DTX sing 142 n n C3 O32 DTX sing 143 n n C3 HC3 DTX sing 144 n n C2 HC21 DTX sing 145 n n C2 HC22 DTX sing 146 n n O32 H32O DTX sing 147 n n # _atom_sites.entry_id 7W11 _atom_sites.fract_transf_matrix[1][1] 0.019703 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002487 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 501 502 UDP UDP . C 3 GLC A 1 502 503 GLC D3G . D 4 DTX A 1 503 503 DTX D3G . E 5 HOH A 1 601 3 HOH HOH . E 5 HOH A 2 602 2 HOH HOH . E 5 HOH A 3 603 1 HOH HOH . E 5 HOH A 4 604 86 HOH HOH . E 5 HOH A 5 605 15 HOH HOH . E 5 HOH A 6 606 85 HOH HOH . E 5 HOH A 7 607 92 HOH HOH . E 5 HOH A 8 608 70 HOH HOH . E 5 HOH A 9 609 17 HOH HOH . E 5 HOH A 10 610 94 HOH HOH . E 5 HOH A 11 611 71 HOH HOH . E 5 HOH A 12 612 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 DTX . . . D 4 -3.169 4.564 -15.013 1 50.04 ? O23 DTX 503 A 1 HETATM 2 C C23 DTX . . . D 4 -3.646 3.96 -14.084 1 43.97 ? C23 DTX 503 A 1 HETATM 3 C C22 DTX . . . D 4 -4.928 3.281 -13.942 1 38.83 ? C22 DTX 503 A 1 HETATM 4 O O21 DTX . . . D 4 -2.956 3.836 -12.929 1 44.73 ? O21 DTX 503 A 1 HETATM 5 C C21 DTX . . . D 4 -3.76 3.089 -11.988 1 43.49 ? C21 DTX 503 A 1 HETATM 6 C C20 DTX . . . D 4 -4.963 2.661 -12.766 1 42.79 ? C20 DTX 503 A 1 HETATM 7 C C17 DTX . . . D 4 -5.97 1.685 -12.23 1 48.8 ? C17 DTX 503 A 1 HETATM 8 C C16 DTX . . . D 4 -7.429 2 -12.633 1 40.64 ? C16 DTX 503 A 1 HETATM 9 C C13 DTX . . . D 4 -5.732 0.198 -12.643 1 44.82 ? C13 DTX 503 A 1 HETATM 10 C C12 DTX . . . D 4 -6.169 -0.684 -11.462 1 38.14 ? C12 DTX 503 A 1 HETATM 11 C C11 DTX . . . D 4 -6.276 -2.155 -11.847 1 40.1 ? C11 DTX 503 A 1 HETATM 12 C C18 DTX . . . D 4 -4.287 -0.119 -13.007 1 44.13 ? C18 DTX 503 A 1 HETATM 13 C C14 DTX . . . D 4 -6.716 -0.009 -13.826 1 43.01 ? C14 DTX 503 A 1 HETATM 14 C C15 DTX . . . D 4 -7.957 0.774 -13.389 1 37.67 ? C15 DTX 503 A 1 HETATM 15 O O14 DTX . . . D 4 -6.167 0.662 -14.988 1 45.55 ? O14 DTX 503 A 1 HETATM 16 C C8 DTX . . . D 4 -6.943 -1.484 -14.185 1 41.02 ? C8 DTX 503 A 1 HETATM 17 C C7 DTX . . . D 4 -8.007 -1.628 -15.281 1 41.45 ? C7 DTX 503 A 1 HETATM 18 C C9 DTX . . . D 4 -7.293 -2.381 -12.978 1 39.4 ? C9 DTX 503 A 1 HETATM 19 C C10 DTX . . . D 4 -7.485 -3.876 -13.367 1 37.91 ? C10 DTX 503 A 1 HETATM 20 C C1 DTX . . . D 4 -7.955 -4.718 -12.165 1 35.71 ? C1 DTX 503 A 1 HETATM 21 C C19 DTX . . . D 4 -6.17 -4.498 -13.874 1 38.03 ? C19 DTX 503 A 1 HETATM 22 C C5 DTX . . . D 4 -8.581 -3.945 -14.465 1 37.86 ? C5 DTX 503 A 1 HETATM 23 C C6 DTX . . . D 4 -8.212 -3.09 -15.679 1 41.35 ? C6 DTX 503 A 1 HETATM 24 C C4 DTX . . . D 4 -9.979 -3.609 -13.919 1 33.07 ? C4 DTX 503 A 1 HETATM 25 C C3 DTX . . . D 4 -10.362 -4.46 -12.687 1 35.58 ? C3 DTX 503 A 1 HETATM 26 C C2 DTX . . . D 4 -9.272 -5.45 -12.41 1 41.52 ? C2 DTX 503 A 1 HETATM 27 O O32 DTX . . . D 4 -11.681 -4.975 -12.953 1 38.65 ? O32 DTX 503 A 1 HETATM 28 H H22 DTX . . . D 4 -5.617 3.282 -14.579 1 46.72 ? H22 DTX 503 A 1 HETATM 29 H H211 DTX . . . D 4 -3.269 2.316 -11.661 1 52.31 ? H211 DTX 503 A 1 HETATM 30 H H212 DTX . . . D 4 -4.017 3.652 -11.239 1 52.31 ? H212 DTX 503 A 1 HETATM 31 H H17 DTX . . . D 4 -5.941 1.727 -11.246 1 58.69 ? H17 DTX 503 A 1 HETATM 32 H H161 DTX . . . D 4 -7.458 2.789 -13.204 1 48.9 ? H161 DTX 503 A 1 HETATM 33 H H162 DTX . . . D 4 -7.969 2.169 -11.84 1 48.9 ? H162 DTX 503 A 1 HETATM 34 H H121 DTX . . . D 4 -5.524 -0.585 -10.741 1 45.89 ? H121 DTX 503 A 1 HETATM 35 H H122 DTX . . . D 4 -7.03 -0.372 -11.139 1 45.89 ? H122 DTX 503 A 1 HETATM 36 H H111 DTX . . . D 4 -5.398 -2.479 -12.134 1 48.25 ? H111 DTX 503 A 1 HETATM 37 H H112 DTX . . . D 4 -6.544 -2.675 -11.063 1 48.25 ? H112 DTX 503 A 1 HETATM 38 H H181 DTX . . . D 4 -4.229 -1.037 -13.325 1 53.08 ? H181 DTX 503 A 1 HETATM 39 H H182 DTX . . . D 4 -3.725 -0.009 -12.219 1 53.08 ? H182 DTX 503 A 1 HETATM 40 H H183 DTX . . . D 4 -3.991 0.49 -13.707 1 53.08 ? H183 DTX 503 A 1 HETATM 41 H H151 DTX . . . D 4 -8.48 1.05 -14.162 1 45.33 ? H151 DTX 503 A 1 HETATM 42 H H152 DTX . . . D 4 -8.52 0.231 -12.808 1 45.33 ? H152 DTX 503 A 1 HETATM 43 H H14O DTX . . . D 4 -6.775 0.747 -15.565 1 54.78 ? H14O DTX 503 A 1 HETATM 44 H HC8 DTX . . . D 4 -6.082 -1.816 -14.543 1 49.35 ? HC8 DTX 503 A 1 HETATM 45 H HC71 DTX . . . D 4 -8.845 -1.262 -14.963 1 49.87 ? HC71 DTX 503 A 1 HETATM 46 H HC72 DTX . . . D 4 -7.735 -1.12 -16.059 1 49.87 ? HC72 DTX 503 A 1 HETATM 47 H HC9 DTX . . . D 4 -8.166 -2.072 -12.642 1 47.41 ? HC9 DTX 503 A 1 HETATM 48 H HC11 DTX . . . D 4 -7.269 -5.372 -11.952 1 42.98 ? HC11 DTX 503 A 1 HETATM 49 H HC12 DTX . . . D 4 -8.058 -4.136 -11.395 1 42.98 ? HC12 DTX 503 A 1 HETATM 50 H H191 DTX . . . D 4 -6.325 -5.428 -14.132 1 45.76 ? H191 DTX 503 A 1 HETATM 51 H H192 DTX . . . D 4 -5.497 -4.466 -13.165 1 45.76 ? H192 DTX 503 A 1 HETATM 52 H H193 DTX . . . D 4 -5.847 -3.997 -14.65 1 45.76 ? H193 DTX 503 A 1 HETATM 53 H HC5 DTX . . . D 4 -8.626 -4.874 -14.783 1 45.55 ? HC5 DTX 503 A 1 HETATM 54 H HC61 DTX . . . D 4 -8.926 -3.148 -16.347 1 49.75 ? HC61 DTX 503 A 1 HETATM 55 H HC62 DTX . . . D 4 -7.391 -3.436 -16.084 1 49.75 ? HC62 DTX 503 A 1 HETATM 56 H HC41 DTX . . . D 4 -10.011 -2.676 -13.667 1 39.81 ? HC41 DTX 503 A 1 HETATM 57 H HC42 DTX . . . D 4 -10.639 -3.758 -14.61 1 39.81 ? HC42 DTX 503 A 1 HETATM 58 H HC3 DTX . . . D 4 -10.44 -3.959 -11.835 1 42.82 ? HC3 DTX 503 A 1 HETATM 59 H HC21 DTX . . . D 4 -9.505 -5.977 -11.63 1 49.95 ? HC21 DTX 503 A 1 HETATM 60 H HC22 DTX . . . D 4 -9.179 -6.05 -13.165 1 49.95 ? HC22 DTX 503 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 60 #