data_7W16 # _model_server_result.job_id GQG9HQNZJlDgHzT6rBmrvA _model_server_result.datetime_utc '2024-11-28 22:57:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7W16 # _exptl.entry_id 7W16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7W16 _cell.length_a 80.405 _cell.length_b 80.405 _cell.length_c 113.775 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 BEM _pdbx_entity_branch_link.comp_id_2 BEM _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BEM 1 B 1 BEM B 1 BEM 2 n B BEM 2 B 2 BEM B 2 BEM # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 207 A CYS 206 1_555 A SG CYS 219 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? covale ? covale1 B O4 BEM . B BEM 1 1_555 B C1 BEM . B BEM 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 152 n n C1 C2 GOL sing 153 n n C1 H11 GOL sing 154 n n C1 H12 GOL sing 155 n n O1 HO1 GOL sing 156 n n C2 O2 GOL sing 157 n n C2 C3 GOL sing 158 n n C2 H2 GOL sing 159 n n O2 HO2 GOL sing 160 n n C3 O3 GOL sing 161 n n C3 H31 GOL sing 162 n n C3 H32 GOL sing 163 n n O3 HO3 GOL sing 164 n n # _atom_sites.entry_id 7W16 _atom_sites.fract_transf_matrix[1][1] 0.012437 _atom_sites.fract_transf_matrix[1][2] 0.007181 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 401 1 GOL GOL . D 4 HOH A 1 501 87 HOH HOH . D 4 HOH A 2 502 68 HOH HOH . D 4 HOH A 3 503 163 HOH HOH . D 4 HOH A 4 504 15 HOH HOH . D 4 HOH A 5 505 65 HOH HOH . D 4 HOH A 6 506 86 HOH HOH . D 4 HOH A 7 507 36 HOH HOH . D 4 HOH A 8 508 72 HOH HOH . D 4 HOH A 9 509 7 HOH HOH . D 4 HOH A 10 510 91 HOH HOH . D 4 HOH A 11 511 98 HOH HOH . D 4 HOH A 12 512 61 HOH HOH . D 4 HOH A 13 513 1 HOH HOH . D 4 HOH A 14 514 12 HOH HOH . D 4 HOH A 15 515 22 HOH HOH . D 4 HOH A 16 516 4 HOH HOH . D 4 HOH A 17 517 78 HOH HOH . D 4 HOH A 18 518 11 HOH HOH . D 4 HOH A 19 519 64 HOH HOH . D 4 HOH A 20 520 33 HOH HOH . D 4 HOH A 21 521 80 HOH HOH . D 4 HOH A 22 522 81 HOH HOH . D 4 HOH A 23 523 138 HOH HOH . D 4 HOH A 24 524 37 HOH HOH . D 4 HOH A 25 525 56 HOH HOH . D 4 HOH A 26 526 2 HOH HOH . D 4 HOH A 27 527 74 HOH HOH . D 4 HOH A 28 528 26 HOH HOH . D 4 HOH A 29 529 76 HOH HOH . D 4 HOH A 30 530 46 HOH HOH . D 4 HOH A 31 531 119 HOH HOH . D 4 HOH A 32 532 34 HOH HOH . D 4 HOH A 33 533 30 HOH HOH . D 4 HOH A 34 534 88 HOH HOH . D 4 HOH A 35 535 63 HOH HOH . D 4 HOH A 36 536 6 HOH HOH . D 4 HOH A 37 537 130 HOH HOH . D 4 HOH A 38 538 5 HOH HOH . D 4 HOH A 39 539 93 HOH HOH . D 4 HOH A 40 540 110 HOH HOH . D 4 HOH A 41 541 114 HOH HOH . D 4 HOH A 42 542 112 HOH HOH . D 4 HOH A 43 543 47 HOH HOH . D 4 HOH A 44 544 66 HOH HOH . D 4 HOH A 45 545 13 HOH HOH . D 4 HOH A 46 546 39 HOH HOH . D 4 HOH A 47 547 9 HOH HOH . D 4 HOH A 48 548 38 HOH HOH . D 4 HOH A 49 549 106 HOH HOH . D 4 HOH A 50 550 53 HOH HOH . D 4 HOH A 51 551 35 HOH HOH . D 4 HOH A 52 552 103 HOH HOH . D 4 HOH A 53 553 60 HOH HOH . D 4 HOH A 54 554 54 HOH HOH . D 4 HOH A 55 555 17 HOH HOH . D 4 HOH A 56 556 57 HOH HOH . D 4 HOH A 57 557 14 HOH HOH . D 4 HOH A 58 558 31 HOH HOH . D 4 HOH A 59 559 16 HOH HOH . D 4 HOH A 60 560 32 HOH HOH . D 4 HOH A 61 561 120 HOH HOH . D 4 HOH A 62 562 75 HOH HOH . D 4 HOH A 63 563 19 HOH HOH . D 4 HOH A 64 564 10 HOH HOH . D 4 HOH A 65 565 43 HOH HOH . D 4 HOH A 66 566 41 HOH HOH . D 4 HOH A 67 567 23 HOH HOH . D 4 HOH A 68 568 18 HOH HOH . D 4 HOH A 69 569 105 HOH HOH . D 4 HOH A 70 570 62 HOH HOH . D 4 HOH A 71 571 108 HOH HOH . D 4 HOH A 72 572 44 HOH HOH . D 4 HOH A 73 573 51 HOH HOH . D 4 HOH A 74 574 42 HOH HOH . D 4 HOH A 75 575 52 HOH HOH . D 4 HOH A 76 576 20 HOH HOH . D 4 HOH A 77 577 100 HOH HOH . D 4 HOH A 78 578 48 HOH HOH . D 4 HOH A 79 579 8 HOH HOH . D 4 HOH A 80 580 21 HOH HOH . D 4 HOH A 81 581 218 HOH HOH . D 4 HOH A 82 582 59 HOH HOH . D 4 HOH A 83 583 29 HOH HOH . D 4 HOH A 84 584 158 HOH HOH . D 4 HOH A 85 585 71 HOH HOH . D 4 HOH A 86 586 82 HOH HOH . D 4 HOH A 87 587 3 HOH HOH . D 4 HOH A 88 588 128 HOH HOH . D 4 HOH A 89 589 90 HOH HOH . D 4 HOH A 90 590 83 HOH HOH . D 4 HOH A 91 591 24 HOH HOH . D 4 HOH A 92 592 165 HOH HOH . D 4 HOH A 93 593 92 HOH HOH . D 4 HOH A 94 594 45 HOH HOH . D 4 HOH A 95 595 55 HOH HOH . D 4 HOH A 96 596 70 HOH HOH . D 4 HOH A 97 597 99 HOH HOH . D 4 HOH A 98 598 107 HOH HOH . D 4 HOH A 99 599 123 HOH HOH . D 4 HOH A 100 600 28 HOH HOH . D 4 HOH A 101 601 160 HOH HOH . D 4 HOH A 102 602 25 HOH HOH . D 4 HOH A 103 603 49 HOH HOH . D 4 HOH A 104 604 97 HOH HOH . D 4 HOH A 105 605 79 HOH HOH . D 4 HOH A 106 606 124 HOH HOH . D 4 HOH A 107 607 50 HOH HOH . D 4 HOH A 108 608 85 HOH HOH . D 4 HOH A 109 609 27 HOH HOH . D 4 HOH A 110 610 121 HOH HOH . D 4 HOH A 111 611 111 HOH HOH . D 4 HOH A 112 612 217 HOH HOH . D 4 HOH A 113 613 102 HOH HOH . D 4 HOH A 114 614 84 HOH HOH . D 4 HOH A 115 615 67 HOH HOH . D 4 HOH A 116 616 95 HOH HOH . D 4 HOH A 117 617 96 HOH HOH . D 4 HOH A 118 618 122 HOH HOH . D 4 HOH A 119 619 159 HOH HOH . D 4 HOH A 120 620 129 HOH HOH . D 4 HOH A 121 621 73 HOH HOH . D 4 HOH A 122 622 89 HOH HOH . D 4 HOH A 123 623 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -32.995 22.836 12.396 1 26.98 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . C 3 -34.315 22.343 12.805 1 28.87 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . C 3 -32.518 23.685 13.683 1 31.98 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . C 3 -33.591 24.283 14.473 1 38.96 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . C 3 -31.837 22.839 14.802 1 34.81 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . C 3 -30.36 22.966 14.783 1 37.15 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #