data_7W1A # _model_server_result.job_id C8dH7ZgWGC8LcuBdMqqCvg _model_server_result.datetime_utc '2024-10-19 13:26:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w1a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 7W1A # _exptl.entry_id 7W1A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GUANOSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.71 _cell.angle_gamma 90 _cell.entry_id 7W1A _cell.length_a 81.014 _cell.length_b 45.852 _cell.length_c 89.677 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W1A _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H13 N5 O5' _chem_comp.formula_weight 283.241 _chem_comp.id GMP _chem_comp.mon_nstd_flag . _chem_comp.name GUANOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' GMP sing 116 n n O5' HO5' GMP sing 117 n n C5' C4' GMP sing 118 n n C5' "H5'1" GMP sing 119 n n C5' "H5'2" GMP sing 120 n n C4' O4' GMP sing 121 n n C4' C3' GMP sing 122 n n C4' H4' GMP sing 123 n n O4' C1' GMP sing 124 n n C3' O3' GMP sing 125 n n C3' C2' GMP sing 126 n n C3' H3' GMP sing 127 n n O3' HO3' GMP sing 128 n n C2' O2' GMP sing 129 n n C2' C1' GMP sing 130 n n C2' H2' GMP sing 131 n n O2' HO2' GMP sing 132 n n C1' N9 GMP sing 133 n n C1' H1' GMP sing 134 n n N9 C8 GMP sing 135 n y N9 C4 GMP sing 136 n y C8 N7 GMP doub 137 n y C8 H8 GMP sing 138 n n N7 C5 GMP sing 139 n y C5 C6 GMP sing 140 n n C5 C4 GMP doub 141 n y C6 O6 GMP doub 142 n n C6 N1 GMP sing 143 n n N1 C2 GMP sing 144 n n N1 HN1 GMP sing 145 n n C2 N2 GMP sing 146 n n C2 N3 GMP doub 147 n n N2 HN21 GMP sing 148 n n N2 HN22 GMP sing 149 n n N3 C4 GMP sing 150 n n # _atom_sites.entry_id 7W1A _atom_sites.fract_transf_matrix[1][1] 0.012344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003472 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011584 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GMP B 1 401 301 GMP GMP . D 3 ZIT B 1 402 302 ZIT ZIT . E 2 GMP A 1 401 301 GMP GMP . F 3 ZIT A 1 402 302 ZIT ZIT . G 4 HOH B 1 501 31 HOH HOH . G 4 HOH B 2 502 61 HOH HOH . G 4 HOH B 3 503 24 HOH HOH . G 4 HOH B 4 504 118 HOH HOH . G 4 HOH B 5 505 50 HOH HOH . G 4 HOH B 6 506 114 HOH HOH . G 4 HOH B 7 507 113 HOH HOH . G 4 HOH B 8 508 51 HOH HOH . G 4 HOH B 9 509 44 HOH HOH . G 4 HOH B 10 510 1 HOH HOH . G 4 HOH B 11 511 94 HOH HOH . G 4 HOH B 12 512 5 HOH HOH . G 4 HOH B 13 513 27 HOH HOH . G 4 HOH B 14 514 107 HOH HOH . G 4 HOH B 15 515 112 HOH HOH . G 4 HOH B 16 516 124 HOH HOH . G 4 HOH B 17 517 105 HOH HOH . G 4 HOH B 18 518 12 HOH HOH . G 4 HOH B 19 519 6 HOH HOH . G 4 HOH B 20 520 78 HOH HOH . G 4 HOH B 21 521 2 HOH HOH . G 4 HOH B 22 522 95 HOH HOH . G 4 HOH B 23 523 70 HOH HOH . G 4 HOH B 24 524 84 HOH HOH . G 4 HOH B 25 525 19 HOH HOH . G 4 HOH B 26 526 43 HOH HOH . G 4 HOH B 27 527 4 HOH HOH . G 4 HOH B 28 528 53 HOH HOH . G 4 HOH B 29 529 3 HOH HOH . G 4 HOH B 30 530 15 HOH HOH . G 4 HOH B 31 531 45 HOH HOH . G 4 HOH B 32 532 63 HOH HOH . G 4 HOH B 33 533 29 HOH HOH . G 4 HOH B 34 534 122 HOH HOH . G 4 HOH B 35 535 68 HOH HOH . G 4 HOH B 36 536 120 HOH HOH . G 4 HOH B 37 537 121 HOH HOH . H 4 HOH A 1 501 38 HOH HOH . H 4 HOH A 2 502 46 HOH HOH . H 4 HOH A 3 503 25 HOH HOH . H 4 HOH A 4 504 23 HOH HOH . H 4 HOH A 5 505 14 HOH HOH . H 4 HOH A 6 506 119 HOH HOH . H 4 HOH A 7 507 48 HOH HOH . H 4 HOH A 8 508 42 HOH HOH . H 4 HOH A 9 509 67 HOH HOH . H 4 HOH A 10 510 75 HOH HOH . H 4 HOH A 11 511 117 HOH HOH . H 4 HOH A 12 512 33 HOH HOH . H 4 HOH A 13 513 34 HOH HOH . H 4 HOH A 14 514 62 HOH HOH . H 4 HOH A 15 515 59 HOH HOH . H 4 HOH A 16 516 18 HOH HOH . H 4 HOH A 17 517 10 HOH HOH . H 4 HOH A 18 518 65 HOH HOH . H 4 HOH A 19 519 20 HOH HOH . H 4 HOH A 20 520 66 HOH HOH . H 4 HOH A 21 521 89 HOH HOH . H 4 HOH A 22 522 72 HOH HOH . H 4 HOH A 23 523 99 HOH HOH . H 4 HOH A 24 524 85 HOH HOH . H 4 HOH A 25 525 30 HOH HOH . H 4 HOH A 26 526 57 HOH HOH . H 4 HOH A 27 527 39 HOH HOH . H 4 HOH A 28 528 40 HOH HOH . H 4 HOH A 29 529 123 HOH HOH . H 4 HOH A 30 530 86 HOH HOH . H 4 HOH A 31 531 125 HOH HOH . H 4 HOH A 32 532 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' GMP . . . E 2 -22.537 -21.991 10.819 1 53.7 ? O5' GMP 401 A 1 HETATM 2 C C5' GMP . . . E 2 -23.389 -23.002 11.344 1 51.1 ? C5' GMP 401 A 1 HETATM 3 C C4' GMP . . . E 2 -22.866 -23.571 12.643 1 47.6 ? C4' GMP 401 A 1 HETATM 4 O O4' GMP . . . E 2 -21.482 -23.975 12.484 1 49.8 ? O4' GMP 401 A 1 HETATM 5 C C3' GMP . . . E 2 -22.84 -22.598 13.797 1 48.83 ? C3' GMP 401 A 1 HETATM 6 O O3' GMP . . . E 2 -24.101 -22.487 14.421 1 52.34 ? O3' GMP 401 A 1 HETATM 7 C C2' GMP . . . E 2 -21.761 -23.171 14.694 1 47.89 ? C2' GMP 401 A 1 HETATM 8 O O2' GMP . . . E 2 -22.282 -24.226 15.472 1 51.45 ? O2' GMP 401 A 1 HETATM 9 C C1' GMP . . . E 2 -20.761 -23.71 13.66 1 47.17 ? C1' GMP 401 A 1 HETATM 10 N N9 GMP . . . E 2 -19.647 -22.772 13.328 1 42.22 ? N9 GMP 401 A 1 HETATM 11 C C8 GMP . . . E 2 -19.638 -21.878 12.329 1 41.89 ? C8 GMP 401 A 1 HETATM 12 N N7 GMP . . . E 2 -18.559 -21.182 12.234 1 40.75 ? N7 GMP 401 A 1 HETATM 13 C C5 GMP . . . E 2 -17.769 -21.643 13.267 1 42.33 ? C5 GMP 401 A 1 HETATM 14 C C6 GMP . . . E 2 -16.425 -21.279 13.627 1 38.92 ? C6 GMP 401 A 1 HETATM 15 O O6 GMP . . . E 2 -15.645 -20.427 13.182 1 45.34 ? O6 GMP 401 A 1 HETATM 16 N N1 GMP . . . E 2 -16.004 -21.988 14.741 1 45.29 ? N1 GMP 401 A 1 HETATM 17 C C2 GMP . . . E 2 -16.682 -22.959 15.397 1 46.61 ? C2 GMP 401 A 1 HETATM 18 N N2 GMP . . . E 2 -16 -23.509 16.404 1 47.45 ? N2 GMP 401 A 1 HETATM 19 N N3 GMP . . . E 2 -17.894 -23.32 15.067 1 46.06 ? N3 GMP 401 A 1 HETATM 20 C C4 GMP . . . E 2 -18.402 -22.627 13.978 1 42.89 ? C4 GMP 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #