data_7W1B # _model_server_result.job_id iLPIBEgk9x8YSTOTCb_YNg _model_server_result.datetime_utc '2024-11-05 19:50:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 7W1B # _exptl.entry_id 7W1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 374.514 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DIGITOXIGENIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.76 _cell.angle_gamma 90 _cell.entry_id 7W1B _cell.length_a 53.351 _cell.length_b 74.141 _cell.length_c 63.588 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H34 O4' _chem_comp.formula_weight 374.514 _chem_comp.id DTX _chem_comp.mon_nstd_flag . _chem_comp.name DIGITOXIGENIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(3,14-DIHYDROXY-10,13-DIMETHYL-HEXADECAHYDRO-CYCLOPENTA[A]PHENANTHREN-17-YL)-5H-FURAN-2-ONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C23 DTX doub 83 n n C23 C22 DTX sing 84 n n C23 O21 DTX sing 85 n n C22 C20 DTX doub 86 n n C22 H22 DTX sing 87 n n O21 C21 DTX sing 88 n n C21 C20 DTX sing 89 n n C21 H211 DTX sing 90 n n C21 H212 DTX sing 91 n n C20 C17 DTX sing 92 n n C17 C16 DTX sing 93 n n C17 C13 DTX sing 94 n n C17 H17 DTX sing 95 n n C16 C15 DTX sing 96 n n C16 H161 DTX sing 97 n n C16 H162 DTX sing 98 n n C13 C12 DTX sing 99 n n C13 C18 DTX sing 100 n n C13 C14 DTX sing 101 n n C12 C11 DTX sing 102 n n C12 H121 DTX sing 103 n n C12 H122 DTX sing 104 n n C11 C9 DTX sing 105 n n C11 H111 DTX sing 106 n n C11 H112 DTX sing 107 n n C18 H181 DTX sing 108 n n C18 H182 DTX sing 109 n n C18 H183 DTX sing 110 n n C14 C15 DTX sing 111 n n C14 O14 DTX sing 112 n n C14 C8 DTX sing 113 n n C15 H151 DTX sing 114 n n C15 H152 DTX sing 115 n n O14 H14O DTX sing 116 n n C8 C7 DTX sing 117 n n C8 C9 DTX sing 118 n n C8 HC8 DTX sing 119 n n C7 C6 DTX sing 120 n n C7 HC71 DTX sing 121 n n C7 HC72 DTX sing 122 n n C9 C10 DTX sing 123 n n C9 HC9 DTX sing 124 n n C10 C1 DTX sing 125 n n C10 C19 DTX sing 126 n n C10 C5 DTX sing 127 n n C1 C2 DTX sing 128 n n C1 HC11 DTX sing 129 n n C1 HC12 DTX sing 130 n n C19 H191 DTX sing 131 n n C19 H192 DTX sing 132 n n C19 H193 DTX sing 133 n n C5 C6 DTX sing 134 n n C5 C4 DTX sing 135 n n C5 HC5 DTX sing 136 n n C6 HC61 DTX sing 137 n n C6 HC62 DTX sing 138 n n C4 C3 DTX sing 139 n n C4 HC41 DTX sing 140 n n C4 HC42 DTX sing 141 n n C3 C2 DTX sing 142 n n C3 O32 DTX sing 143 n n C3 HC3 DTX sing 144 n n C2 HC21 DTX sing 145 n n C2 HC22 DTX sing 146 n n O32 H32O DTX sing 147 n n # _atom_sites.entry_id 7W1B _atom_sites.fract_transf_matrix[1][1] 0.018744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001891 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 501 501 UDP UDP . C 3 TRS A 1 502 701 TRS TRS . D 4 DTX A 1 503 702 DTX DRG . E 5 HOH A 1 601 23 HOH HOH . E 5 HOH A 2 602 69 HOH HOH . E 5 HOH A 3 603 62 HOH HOH . E 5 HOH A 4 604 70 HOH HOH . E 5 HOH A 5 605 75 HOH HOH . E 5 HOH A 6 606 97 HOH HOH . E 5 HOH A 7 607 90 HOH HOH . E 5 HOH A 8 608 56 HOH HOH . E 5 HOH A 9 609 3 HOH HOH . E 5 HOH A 10 610 79 HOH HOH . E 5 HOH A 11 611 6 HOH HOH . E 5 HOH A 12 612 8 HOH HOH . E 5 HOH A 13 613 108 HOH HOH . E 5 HOH A 14 614 1 HOH HOH . E 5 HOH A 15 615 19 HOH HOH . E 5 HOH A 16 616 36 HOH HOH . E 5 HOH A 17 617 64 HOH HOH . E 5 HOH A 18 618 16 HOH HOH . E 5 HOH A 19 619 13 HOH HOH . E 5 HOH A 20 620 91 HOH HOH . E 5 HOH A 21 621 163 HOH HOH . E 5 HOH A 22 622 121 HOH HOH . E 5 HOH A 23 623 25 HOH HOH . E 5 HOH A 24 624 51 HOH HOH . E 5 HOH A 25 625 54 HOH HOH . E 5 HOH A 26 626 2 HOH HOH . E 5 HOH A 27 627 77 HOH HOH . E 5 HOH A 28 628 27 HOH HOH . E 5 HOH A 29 629 9 HOH HOH . E 5 HOH A 30 630 112 HOH HOH . E 5 HOH A 31 631 61 HOH HOH . E 5 HOH A 32 632 71 HOH HOH . E 5 HOH A 33 633 200 HOH HOH . E 5 HOH A 34 634 101 HOH HOH . E 5 HOH A 35 635 38 HOH HOH . E 5 HOH A 36 636 29 HOH HOH . E 5 HOH A 37 637 12 HOH HOH . E 5 HOH A 38 638 257 HOH HOH . E 5 HOH A 39 639 7 HOH HOH . E 5 HOH A 40 640 24 HOH HOH . E 5 HOH A 41 641 14 HOH HOH . E 5 HOH A 42 642 55 HOH HOH . E 5 HOH A 43 643 17 HOH HOH . E 5 HOH A 44 644 110 HOH HOH . E 5 HOH A 45 645 81 HOH HOH . E 5 HOH A 46 646 84 HOH HOH . E 5 HOH A 47 647 20 HOH HOH . E 5 HOH A 48 648 39 HOH HOH . E 5 HOH A 49 649 18 HOH HOH . E 5 HOH A 50 650 45 HOH HOH . E 5 HOH A 51 651 57 HOH HOH . E 5 HOH A 52 652 149 HOH HOH . E 5 HOH A 53 653 256 HOH HOH . E 5 HOH A 54 654 114 HOH HOH . E 5 HOH A 55 655 83 HOH HOH . E 5 HOH A 56 656 5 HOH HOH . E 5 HOH A 57 657 33 HOH HOH . E 5 HOH A 58 658 52 HOH HOH . E 5 HOH A 59 659 161 HOH HOH . E 5 HOH A 60 660 15 HOH HOH . E 5 HOH A 61 661 196 HOH HOH . E 5 HOH A 62 662 46 HOH HOH . E 5 HOH A 63 663 255 HOH HOH . E 5 HOH A 64 664 74 HOH HOH . E 5 HOH A 65 665 173 HOH HOH . E 5 HOH A 66 666 78 HOH HOH . E 5 HOH A 67 667 21 HOH HOH . E 5 HOH A 68 668 229 HOH HOH . E 5 HOH A 69 669 44 HOH HOH . E 5 HOH A 70 670 194 HOH HOH . E 5 HOH A 71 671 76 HOH HOH . E 5 HOH A 72 672 48 HOH HOH . E 5 HOH A 73 673 107 HOH HOH . E 5 HOH A 74 674 10 HOH HOH . E 5 HOH A 75 675 42 HOH HOH . E 5 HOH A 76 676 49 HOH HOH . E 5 HOH A 77 677 182 HOH HOH . E 5 HOH A 78 678 47 HOH HOH . E 5 HOH A 79 679 158 HOH HOH . E 5 HOH A 80 680 22 HOH HOH . E 5 HOH A 81 681 41 HOH HOH . E 5 HOH A 82 682 65 HOH HOH . E 5 HOH A 83 683 167 HOH HOH . E 5 HOH A 84 684 4 HOH HOH . E 5 HOH A 85 685 26 HOH HOH . E 5 HOH A 86 686 72 HOH HOH . E 5 HOH A 87 687 37 HOH HOH . E 5 HOH A 88 688 249 HOH HOH . E 5 HOH A 89 689 35 HOH HOH . E 5 HOH A 90 690 227 HOH HOH . E 5 HOH A 91 691 98 HOH HOH . E 5 HOH A 92 692 53 HOH HOH . E 5 HOH A 93 693 63 HOH HOH . E 5 HOH A 94 694 50 HOH HOH . E 5 HOH A 95 695 119 HOH HOH . E 5 HOH A 96 696 187 HOH HOH . E 5 HOH A 97 697 164 HOH HOH . E 5 HOH A 98 698 208 HOH HOH . E 5 HOH A 99 699 150 HOH HOH . E 5 HOH A 100 700 237 HOH HOH . E 5 HOH A 101 701 43 HOH HOH . E 5 HOH A 102 702 138 HOH HOH . E 5 HOH A 103 703 11 HOH HOH . E 5 HOH A 104 704 32 HOH HOH . E 5 HOH A 105 705 31 HOH HOH . E 5 HOH A 106 706 30 HOH HOH . E 5 HOH A 107 707 59 HOH HOH . E 5 HOH A 108 708 67 HOH HOH . E 5 HOH A 109 709 314 HOH HOH . E 5 HOH A 110 710 106 HOH HOH . E 5 HOH A 111 711 82 HOH HOH . E 5 HOH A 112 712 128 HOH HOH . E 5 HOH A 113 713 28 HOH HOH . E 5 HOH A 114 714 272 HOH HOH . E 5 HOH A 115 715 133 HOH HOH . E 5 HOH A 116 716 40 HOH HOH . E 5 HOH A 117 717 254 HOH HOH . E 5 HOH A 118 718 34 HOH HOH . E 5 HOH A 119 719 60 HOH HOH . E 5 HOH A 120 720 66 HOH HOH . E 5 HOH A 121 721 213 HOH HOH . E 5 HOH A 122 722 152 HOH HOH . E 5 HOH A 123 723 202 HOH HOH . E 5 HOH A 124 724 118 HOH HOH . E 5 HOH A 125 725 278 HOH HOH . E 5 HOH A 126 726 294 HOH HOH . E 5 HOH A 127 727 240 HOH HOH . E 5 HOH A 128 728 260 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 DTX . . . D 4 -5.645 4.336 -16.632 1 84.54 ? O23 DTX 503 A 1 HETATM 2 C C23 DTX . . . D 4 -6.308 3.383 -16.308 1 81.88 ? C23 DTX 503 A 1 HETATM 3 C C22 DTX . . . D 4 -6.118 2.413 -15.237 1 75.99 ? C22 DTX 503 A 1 HETATM 4 O O21 DTX . . . D 4 -7.422 3.056 -16.996 1 82.01 ? O21 DTX 503 A 1 HETATM 5 C C21 DTX . . . D 4 -8.081 1.97 -16.308 1 76.93 ? C21 DTX 503 A 1 HETATM 6 C C20 DTX . . . D 4 -7.125 1.546 -15.235 1 73.47 ? C20 DTX 503 A 1 HETATM 7 C C17 DTX . . . D 4 -7.338 0.394 -14.296 1 69.04 ? C17 DTX 503 A 1 HETATM 8 C C16 DTX . . . D 4 -8.646 0.528 -13.476 1 61.41 ? C16 DTX 503 A 1 HETATM 9 C C13 DTX . . . D 4 -7.363 -1.05 -14.9 1 62.92 ? C13 DTX 503 A 1 HETATM 10 C C12 DTX . . . D 4 -6.614 -1.961 -13.905 1 56.56 ? C12 DTX 503 A 1 HETATM 11 C C11 DTX . . . D 4 -6.916 -3.446 -14.097 1 57.55 ? C11 DTX 503 A 1 HETATM 12 C C18 DTX . . . D 4 -6.706 -1.173 -16.271 1 55.97 ? C18 DTX 503 A 1 HETATM 13 C C14 DTX . . . D 4 -8.877 -1.419 -14.891 1 63.36 ? C14 DTX 503 A 1 HETATM 14 C C15 DTX . . . D 4 -9.334 -0.841 -13.55 1 59.66 ? C15 DTX 503 A 1 HETATM 15 O O14 DTX . . . D 4 -9.536 -0.7 -15.962 1 63.62 ? O14 DTX 503 A 1 HETATM 16 C C8 DTX . . . D 4 -9.163 -2.913 -15.077 1 56.96 ? C8 DTX 503 A 1 HETATM 17 C C7 DTX . . . D 4 -10.663 -3.226 -15.045 1 52.92 ? C7 DTX 503 A 1 HETATM 18 C C9 DTX . . . D 4 -8.423 -3.733 -14.005 1 52.33 ? C9 DTX 503 A 1 HETATM 19 C C10 DTX . . . D 4 -8.854 -5.228 -14.003 1 47.42 ? C10 DTX 503 A 1 HETATM 20 C C1 DTX . . . D 4 -8.057 -6.042 -12.97 1 51.52 ? C1 DTX 503 A 1 HETATM 21 C C19 DTX . . . D 4 -8.643 -5.896 -15.378 1 47.78 ? C19 DTX 503 A 1 HETATM 22 C C5 DTX . . . D 4 -10.352 -5.287 -13.598 1 49.45 ? C5 DTX 503 A 1 HETATM 23 C C6 DTX . . . D 4 -11.063 -3.943 -13.755 1 46.81 ? C6 DTX 503 A 1 HETATM 24 C C4 DTX . . . D 4 -10.555 -5.853 -12.189 1 44.59 ? C4 DTX 503 A 1 HETATM 25 C C3 DTX . . . D 4 -10.017 -7.265 -12.026 1 37.28 ? C3 DTX 503 A 1 HETATM 26 C C2 DTX . . . D 4 -8.664 -7.408 -12.683 1 43.74 ? C2 DTX 503 A 1 HETATM 27 O O32 DTX . . . D 4 -10.936 -8.214 -12.6 1 42.73 ? O32 DTX 503 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #