data_7W1Q
#
_model_server_result.job_id            Llb6_gIove6w1DxYC2jXsQ 
_model_server_result.datetime_utc      '2024-11-15 15:24:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7w1q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":202}' 
#
_entry.id    7W1Q 
#
_exptl.entry_id    7W1Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              377.247 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7W1Q 
_cell.length_a            119.244 
_cell.length_b            119.244 
_cell.length_c            39.01 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7W1Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    'P 61' 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 52 A HIS 80 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc2 A SG CYS 82 A CYS 110 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc3 A SG CYS 85 A CYS 113 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc4 C ZN ZN . A ZN 201 1_555 G O HOH . A HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc5 B ND1 HIS 52 D HIS 80 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc6 B SG CYS 82 D CYS 110 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc7 B SG CYS 85 D CYS 113 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc8 E ZN ZN . D ZN 201 1_555 H O HOH . D HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? 
#
_chem_comp.formula           'C11 H16 N5 O8 P' 
_chem_comp.formula_weight    377.247 
_chem_comp.id                OMG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P OP1 OMG doub 237 n n 
P OP2 OMG sing 238 n n 
P OP3 OMG sing 239 n n 
P O5' OMG sing 240 n n 
OP2 HOP2 OMG sing 241 n n 
OP3 HOP3 OMG sing 242 n n 
O5' C5' OMG sing 243 n n 
C5' C4' OMG sing 244 n n 
C5' H5' OMG sing 245 n n 
C5' "H5''" OMG sing 246 n n 
C4' O4' OMG sing 247 n n 
C4' C3' OMG sing 248 n n 
C4' H4' OMG sing 249 n n 
O4' C1' OMG sing 250 n n 
C3' O3' OMG sing 251 n n 
C3' C2' OMG sing 252 n n 
C3' H3' OMG sing 253 n n 
O3' HO3' OMG sing 254 n n 
C2' O2' OMG sing 255 n n 
C2' C1' OMG sing 256 n n 
C2' H2' OMG sing 257 n n 
O2' CM2 OMG sing 258 n n 
CM2 HM21 OMG sing 259 n n 
CM2 HM22 OMG sing 260 n n 
CM2 HM23 OMG sing 261 n n 
C1' N9 OMG sing 262 n n 
C1' H1' OMG sing 263 n n 
N9 C8 OMG sing 264 n y 
N9 C4 OMG sing 265 n y 
C8 N7 OMG doub 266 n y 
C8 H8 OMG sing 267 n n 
N7 C5 OMG sing 268 n y 
C5 C6 OMG sing 269 n n 
C5 C4 OMG doub 270 n y 
C6 O6 OMG doub 271 n n 
C6 N1 OMG sing 272 n n 
N1 C2 OMG sing 273 n n 
N1 HN1 OMG sing 274 n n 
C2 N2 OMG sing 275 n n 
C2 N3 OMG doub 276 n n 
N2 HN21 OMG sing 277 n n 
N2 HN22 OMG sing 278 n n 
N3 C4 OMG sing 279 n n 
#
_atom_sites.entry_id                     7W1Q 
_atom_sites.fract_transf_matrix[1][1]    0.008386 
_atom_sites.fract_transf_matrix[1][2]    0.004842 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009684 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025634 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 201 2 ZN ZN . 
D 3 OMG A 1 202 201 OMG 2MG . 
E 2 ZN D 1 201 1 ZN ZN . 
F 3 OMG D 1 202 201 OMG 2MG . 
G 4 HOH A 1 301 38 HOH HOH . 
G 4 HOH A 2 302 79 HOH HOH . 
G 4 HOH A 3 303 132 HOH HOH . 
G 4 HOH A 4 304 32 HOH HOH . 
G 4 HOH A 5 305 45 HOH HOH . 
G 4 HOH A 6 306 71 HOH HOH . 
G 4 HOH A 7 307 65 HOH HOH . 
G 4 HOH A 8 308 46 HOH HOH . 
G 4 HOH A 9 309 25 HOH HOH . 
G 4 HOH A 10 310 116 HOH HOH . 
G 4 HOH A 11 311 98 HOH HOH . 
G 4 HOH A 12 312 28 HOH HOH . 
G 4 HOH A 13 313 7 HOH HOH . 
G 4 HOH A 14 314 9 HOH HOH . 
G 4 HOH A 15 315 89 HOH HOH . 
G 4 HOH A 16 316 138 HOH HOH . 
G 4 HOH A 17 317 101 HOH HOH . 
G 4 HOH A 18 318 14 HOH HOH . 
G 4 HOH A 19 319 20 HOH HOH . 
G 4 HOH A 20 320 4 HOH HOH . 
G 4 HOH A 21 321 21 HOH HOH . 
G 4 HOH A 22 322 51 HOH HOH . 
G 4 HOH A 23 323 48 HOH HOH . 
G 4 HOH A 24 324 119 HOH HOH . 
G 4 HOH A 25 325 62 HOH HOH . 
G 4 HOH A 26 326 136 HOH HOH . 
G 4 HOH A 27 327 105 HOH HOH . 
G 4 HOH A 28 328 83 HOH HOH . 
G 4 HOH A 29 329 88 HOH HOH . 
G 4 HOH A 30 330 58 HOH HOH . 
G 4 HOH A 31 331 18 HOH HOH . 
G 4 HOH A 32 332 133 HOH HOH . 
G 4 HOH A 33 333 54 HOH HOH . 
G 4 HOH A 34 334 121 HOH HOH . 
G 4 HOH A 35 335 68 HOH HOH . 
G 4 HOH A 36 336 69 HOH HOH . 
G 4 HOH A 37 337 93 HOH HOH . 
G 4 HOH A 38 338 47 HOH HOH . 
G 4 HOH A 39 339 97 HOH HOH . 
G 4 HOH A 40 340 29 HOH HOH . 
G 4 HOH A 41 341 8 HOH HOH . 
G 4 HOH A 42 342 111 HOH HOH . 
G 4 HOH A 43 343 39 HOH HOH . 
G 4 HOH A 44 344 50 HOH HOH . 
G 4 HOH A 45 345 70 HOH HOH . 
G 4 HOH A 46 346 52 HOH HOH . 
G 4 HOH A 47 347 37 HOH HOH . 
G 4 HOH A 48 348 56 HOH HOH . 
G 4 HOH A 49 349 77 HOH HOH . 
G 4 HOH A 50 350 90 HOH HOH . 
G 4 HOH A 51 351 73 HOH HOH . 
G 4 HOH A 52 352 102 HOH HOH . 
G 4 HOH A 53 353 117 HOH HOH . 
G 4 HOH A 54 354 44 HOH HOH . 
G 4 HOH A 55 355 110 HOH HOH . 
G 4 HOH A 56 356 82 HOH HOH . 
G 4 HOH A 57 357 131 HOH HOH . 
G 4 HOH A 58 358 99 HOH HOH . 
G 4 HOH A 59 359 92 HOH HOH . 
G 4 HOH A 60 360 140 HOH HOH . 
G 4 HOH A 61 361 74 HOH HOH . 
G 4 HOH A 62 362 109 HOH HOH . 
G 4 HOH A 63 363 137 HOH HOH . 
G 4 HOH A 64 364 96 HOH HOH . 
G 4 HOH A 65 365 112 HOH HOH . 
G 4 HOH A 66 366 125 HOH HOH . 
G 4 HOH A 67 367 115 HOH HOH . 
G 4 HOH A 68 368 128 HOH HOH . 
H 4 HOH D 1 301 26 HOH HOH . 
H 4 HOH D 2 302 11 HOH HOH . 
H 4 HOH D 3 303 61 HOH HOH . 
H 4 HOH D 4 304 5 HOH HOH . 
H 4 HOH D 5 305 120 HOH HOH . 
H 4 HOH D 6 306 100 HOH HOH . 
H 4 HOH D 7 307 64 HOH HOH . 
H 4 HOH D 8 308 53 HOH HOH . 
H 4 HOH D 9 309 135 HOH HOH . 
H 4 HOH D 10 310 33 HOH HOH . 
H 4 HOH D 11 311 86 HOH HOH . 
H 4 HOH D 12 312 12 HOH HOH . 
H 4 HOH D 13 313 129 HOH HOH . 
H 4 HOH D 14 314 66 HOH HOH . 
H 4 HOH D 15 315 30 HOH HOH . 
H 4 HOH D 16 316 122 HOH HOH . 
H 4 HOH D 17 317 35 HOH HOH . 
H 4 HOH D 18 318 94 HOH HOH . 
H 4 HOH D 19 319 15 HOH HOH . 
H 4 HOH D 20 320 63 HOH HOH . 
H 4 HOH D 21 321 118 HOH HOH . 
H 4 HOH D 22 322 41 HOH HOH . 
H 4 HOH D 23 323 42 HOH HOH . 
H 4 HOH D 24 324 57 HOH HOH . 
H 4 HOH D 25 325 107 HOH HOH . 
H 4 HOH D 26 326 3 HOH HOH . 
H 4 HOH D 27 327 67 HOH HOH . 
H 4 HOH D 28 328 87 HOH HOH . 
H 4 HOH D 29 329 13 HOH HOH . 
H 4 HOH D 30 330 124 HOH HOH . 
H 4 HOH D 31 331 31 HOH HOH . 
H 4 HOH D 32 332 34 HOH HOH . 
H 4 HOH D 33 333 55 HOH HOH . 
H 4 HOH D 34 334 24 HOH HOH . 
H 4 HOH D 35 335 19 HOH HOH . 
H 4 HOH D 36 336 59 HOH HOH . 
H 4 HOH D 37 337 10 HOH HOH . 
H 4 HOH D 38 338 81 HOH HOH . 
H 4 HOH D 39 339 123 HOH HOH . 
H 4 HOH D 40 340 91 HOH HOH . 
H 4 HOH D 41 341 17 HOH HOH . 
H 4 HOH D 42 342 108 HOH HOH . 
H 4 HOH D 43 343 76 HOH HOH . 
H 4 HOH D 44 344 113 HOH HOH . 
H 4 HOH D 45 345 130 HOH HOH . 
H 4 HOH D 46 346 75 HOH HOH . 
H 4 HOH D 47 347 106 HOH HOH . 
H 4 HOH D 48 348 85 HOH HOH . 
H 4 HOH D 49 349 114 HOH HOH . 
H 4 HOH D 50 350 43 HOH HOH . 
H 4 HOH D 51 351 84 HOH HOH . 
H 4 HOH D 52 352 95 HOH HOH . 
H 4 HOH D 53 353 23 HOH HOH . 
H 4 HOH D 54 354 127 HOH HOH . 
H 4 HOH D 55 355 104 HOH HOH . 
H 4 HOH D 56 356 60 HOH HOH . 
H 4 HOH D 57 357 126 HOH HOH . 
H 4 HOH D 58 358 139 HOH HOH . 
H 4 HOH D 59 359 80 HOH HOH . 
H 4 HOH D 60 360 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' OMG . . . F 3 -47.715 -20.898 -2.357 1 59.88 ? O5' OMG 202 D 1 
HETATM 2 C C5' OMG . . . F 3 -46.322 -20.74 -2.23 1 44.45 ? C5' OMG 202 D 1 
HETATM 3 C C4' OMG . . . F 3 -45.722 -20.196 -3.575 1 49.36 ? C4' OMG 202 D 1 
HETATM 4 O O4' OMG . . . F 3 -46.887 -19.867 -4.605 1 54.65 ? O4' OMG 202 D 1 
HETATM 5 C C3' OMG . . . F 3 -45.105 -19.104 -3.356 1 46.91 ? C3' OMG 202 D 1 
HETATM 6 O O3' OMG . . . F 3 -43.659 -19.367 -3.4 1 43.32 ? O3' OMG 202 D 1 
HETATM 7 C C2' OMG . . . F 3 -45.509 -18.025 -4.541 1 43.78 ? C2' OMG 202 D 1 
HETATM 8 O O2' OMG . . . F 3 -44.422 -17.952 -5.472 1 54.58 ? O2' OMG 202 D 1 
HETATM 9 C CM2 OMG . . . F 3 -44.642 -17.122 -6.603 1 46.56 ? CM2 OMG 202 D 1 
HETATM 10 C C1' OMG . . . F 3 -46.594 -18.472 -5.15 1 50.73 ? C1' OMG 202 D 1 
HETATM 11 N N9 OMG . . . F 3 -47.808 -17.596 -4.949 1 42.63 ? N9 OMG 202 D 1 
HETATM 12 C C8 OMG . . . F 3 -48.356 -16.784 -5.898 1 41.13 ? C8 OMG 202 D 1 
HETATM 13 N N7 OMG . . . F 3 -49.443 -16.174 -5.359 1 33 ? N7 OMG 202 D 1 
HETATM 14 C C5 OMG . . . F 3 -49.579 -16.606 -4.079 1 30.51 ? C5 OMG 202 D 1 
HETATM 15 C C6 OMG . . . F 3 -50.616 -16.265 -2.992 1 27.01 ? C6 OMG 202 D 1 
HETATM 16 O O6 OMG . . . F 3 -51.486 -15.503 -3.227 1 26.53 ? O6 OMG 202 D 1 
HETATM 17 N N1 OMG . . . F 3 -50.533 -16.878 -1.692 1 29.06 ? N1 OMG 202 D 1 
HETATM 18 C C2 OMG . . . F 3 -49.479 -17.817 -1.415 1 36.37 ? C2 OMG 202 D 1 
HETATM 19 N N2 OMG . . . F 3 -49.387 -18.429 -0.12 1 27.04 ? N2 OMG 202 D 1 
HETATM 20 N N3 OMG . . . F 3 -48.478 -18.137 -2.463 1 45.94 ? N3 OMG 202 D 1 
HETATM 21 C C4 OMG . . . F 3 -48.572 -17.492 -3.822 1 37.44 ? C4 OMG 202 D 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           21 
#