data_7W29 # _model_server_result.job_id anLBG71z5CTOkXkaLt7s7Q _model_server_result.datetime_utc '2024-11-26 05:40:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w29 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7W29 # _exptl.entry_id 7W29 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W29 _cell.length_a 60.467 _cell.length_b 77.668 _cell.length_c 112.054 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W29 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 7 P GLU 72 1_555 A N ORN 8 P ORN 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C ORN 8 P ORN 73 1_555 A N GLY 9 P GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 297 n n N HN1 SAH sing 298 n n N HN2 SAH sing 299 n n CA CB SAH sing 300 n n CA C SAH sing 301 n n CA HA SAH sing 302 n n CB CG SAH sing 303 n n CB HB1 SAH sing 304 n n CB HB2 SAH sing 305 n n CG SD SAH sing 306 n n CG HG1 SAH sing 307 n n CG HG2 SAH sing 308 n n SD C5' SAH sing 309 n n C O SAH doub 310 n n C OXT SAH sing 311 n n OXT HXT SAH sing 312 n n C5' C4' SAH sing 313 n n C5' "H5'1" SAH sing 314 n n C5' "H5'2" SAH sing 315 n n C4' O4' SAH sing 316 n n C4' C3' SAH sing 317 n n C4' H4' SAH sing 318 n n O4' C1' SAH sing 319 n n C3' O3' SAH sing 320 n n C3' C2' SAH sing 321 n n C3' H3' SAH sing 322 n n O3' HO3' SAH sing 323 n n C2' O2' SAH sing 324 n n C2' C1' SAH sing 325 n n C2' H2' SAH sing 326 n n O2' HO2' SAH sing 327 n n C1' N9 SAH sing 328 n n C1' H1' SAH sing 329 n n N9 C8 SAH sing 330 n y N9 C4 SAH sing 331 n y C8 N7 SAH doub 332 n y C8 H8 SAH sing 333 n n N7 C5 SAH sing 334 n y C5 C6 SAH sing 335 n y C5 C4 SAH doub 336 n y C6 N6 SAH sing 337 n n C6 N1 SAH doub 338 n y N6 HN61 SAH sing 339 n n N6 HN62 SAH sing 340 n n N1 C2 SAH sing 341 n y C2 N3 SAH doub 342 n y C2 H2 SAH sing 343 n n N3 C4 SAH sing 344 n y # _atom_sites.entry_id 7W29 _atom_sites.fract_transf_matrix[1][1] 0.016538 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAH A 1 501 1 SAH SAH . D 4 HOH P 1 101 32 HOH HOH . D 4 HOH P 2 102 30 HOH HOH . D 4 HOH P 3 103 9 HOH HOH . D 4 HOH P 4 104 15 HOH HOH . D 4 HOH P 5 105 29 HOH HOH . E 4 HOH A 1 601 4 HOH HOH . E 4 HOH A 2 602 2 HOH HOH . E 4 HOH A 3 603 3 HOH HOH . E 4 HOH A 4 604 11 HOH HOH . E 4 HOH A 5 605 6 HOH HOH . E 4 HOH A 6 606 31 HOH HOH . E 4 HOH A 7 607 26 HOH HOH . E 4 HOH A 8 608 20 HOH HOH . E 4 HOH A 9 609 22 HOH HOH . E 4 HOH A 10 610 7 HOH HOH . E 4 HOH A 11 611 8 HOH HOH . E 4 HOH A 12 612 28 HOH HOH . E 4 HOH A 13 613 27 HOH HOH . E 4 HOH A 14 614 23 HOH HOH . E 4 HOH A 15 615 21 HOH HOH . E 4 HOH A 16 616 24 HOH HOH . E 4 HOH A 17 617 1 HOH HOH . E 4 HOH A 18 618 19 HOH HOH . E 4 HOH A 19 619 14 HOH HOH . E 4 HOH A 20 620 25 HOH HOH . E 4 HOH A 21 621 17 HOH HOH . E 4 HOH A 22 622 35 HOH HOH . E 4 HOH A 23 623 10 HOH HOH . E 4 HOH A 24 624 5 HOH HOH . E 4 HOH A 25 625 34 HOH HOH . E 4 HOH A 26 626 33 HOH HOH . E 4 HOH A 27 627 36 HOH HOH . E 4 HOH A 28 628 18 HOH HOH . E 4 HOH A 29 629 16 HOH HOH . E 4 HOH A 30 630 12 HOH HOH . E 4 HOH A 31 631 37 HOH HOH . E 4 HOH A 32 632 13 HOH HOH . E 4 HOH A 33 633 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 4.826 -9.617 -40.341 1 39.35 ? N SAH 501 A 1 HETATM 2 C CA SAH . . . C 3 4.768 -11.057 -40.57 1 38.94 ? CA SAH 501 A 1 HETATM 3 C CB SAH . . . C 3 3.42 -11.608 -40.119 1 38.21 ? CB SAH 501 A 1 HETATM 4 C CG SAH . . . C 3 3.336 -11.908 -38.625 1 38.79 ? CG SAH 501 A 1 HETATM 5 S SD SAH . . . C 3 4.172 -13.46 -38.207 1 40.1 ? SD SAH 501 A 1 HETATM 6 C C SAH . . . C 3 5.028 -11.4 -42.034 1 40.45 ? C SAH 501 A 1 HETATM 7 O O SAH . . . C 3 5.284 -10.517 -42.853 1 39.54 ? O SAH 501 A 1 HETATM 8 O OXT SAH . . . C 3 5.002 -12.568 -42.427 1 37.98 ? OXT SAH 501 A 1 HETATM 9 C C5' SAH . . . C 3 5.151 -12.686 -36.894 1 39.04 ? C5' SAH 501 A 1 HETATM 10 C C4' SAH . . . C 3 6.386 -11.969 -37.429 1 43.33 ? C4' SAH 501 A 1 HETATM 11 O O4' SAH . . . C 3 6.065 -10.613 -37.692 1 41.52 ? O4' SAH 501 A 1 HETATM 12 C C3' SAH . . . C 3 7.55 -11.996 -36.449 1 44.51 ? C3' SAH 501 A 1 HETATM 13 O O3' SAH . . . C 3 8.554 -12.88 -36.897 1 45.87 ? O3' SAH 501 A 1 HETATM 14 C C2' SAH . . . C 3 8.07 -10.576 -36.432 1 41.54 ? C2' SAH 501 A 1 HETATM 15 O O2' SAH . . . C 3 9.221 -10.499 -37.243 1 40.09 ? O2' SAH 501 A 1 HETATM 16 C C1' SAH . . . C 3 6.978 -9.737 -37.066 1 41.2 ? C1' SAH 501 A 1 HETATM 17 N N9 SAH . . . C 3 6.238 -8.946 -36.061 1 42.4 ? N9 SAH 501 A 1 HETATM 18 C C8 SAH . . . C 3 5.01 -9.27 -35.546 1 41.37 ? C8 SAH 501 A 1 HETATM 19 N N7 SAH . . . C 3 4.645 -8.317 -34.658 1 41.73 ? N7 SAH 501 A 1 HETATM 20 C C5 SAH . . . C 3 5.623 -7.387 -34.591 1 42.04 ? C5 SAH 501 A 1 HETATM 21 C C6 SAH . . . C 3 5.753 -6.221 -33.844 1 43.04 ? C6 SAH 501 A 1 HETATM 22 N N6 SAH . . . C 3 4.791 -5.851 -33.002 1 39.92 ? N6 SAH 501 A 1 HETATM 23 N N1 SAH . . . C 3 6.888 -5.448 -33.982 1 47.5 ? N1 SAH 501 A 1 HETATM 24 C C2 SAH . . . C 3 7.882 -5.84 -34.857 1 46.61 ? C2 SAH 501 A 1 HETATM 25 N N3 SAH . . . C 3 7.745 -7 -35.596 1 44.73 ? N3 SAH 501 A 1 HETATM 26 C C4 SAH . . . C 3 6.632 -7.765 -35.47 1 43.67 ? C4 SAH 501 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #