data_7W33
#
_model_server_result.job_id            JQUOYoGFR-H-XPnEeITawA 
_model_server_result.datetime_utc      '2024-10-20 20:43:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7w33 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    7W33 
#
_exptl.entry_id    7W33 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              614.663 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(2S)-3-(4-fluorophenyl)-1-oxidanylidene-1-[[(2R,3S)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepiperidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-1-benzofuran-2-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7W33 
_cell.length_a            109.203 
_cell.length_b            109.203 
_cell.length_c            92.426 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7W33 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 135 A CYS 22 1_555 A SG CYS 178 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 169 A CYS 56 1_555 A SG CYS 211 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 269 A CYS 156 1_555 A SG CYS 322 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
covale ? covale1 A SG CYS 138 A CYS 25 1_555 B C24 89B . A 89B 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? 
#
_chem_comp.formula           'C34 H35 F N4 O6' 
_chem_comp.formula_weight    614.663 
_chem_comp.id                89B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(2S)-3-(4-fluorophenyl)-1-oxidanylidene-1-[[(2R,3S)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepiperidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-1-benzofuran-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C31 C32 89B doub 1 n y 
C31 C30 89B sing 2 n y 
C32 C33 89B sing 3 n y 
C30 C29 89B doub 4 n y 
C33 C34 89B doub 5 n y 
C29 C34 89B sing 6 n y 
C29 C28 89B sing 7 n n 
C28 N27 89B sing 8 n n 
C20 C19 89B sing 9 n n 
C20 N21 89B sing 10 n n 
C19 C18 89B sing 11 n n 
N21 C22 89B sing 12 n n 
N27 C26 89B sing 13 n n 
O35 C26 89B doub 14 n n 
C18 C17 89B sing 15 n n 
C26 C24 89B sing 16 n n 
C22 C17 89B sing 17 n n 
C22 O23 89B doub 18 n n 
C16 C17 89B sing 19 n n 
C16 C15 89B sing 20 n n 
C24 C15 89B sing 21 n n 
C24 O25 89B sing 22 n n 
C15 N14 89B sing 23 n n 
O36 C13 89B doub 24 n n 
N14 C13 89B sing 25 n n 
C13 C04 89B sing 26 n n 
O01 C02 89B doub 27 n n 
C02 C37 89B sing 28 n n 
C02 N03 89B sing 29 n n 
C38 C37 89B doub 30 n y 
C38 C39 89B sing 31 n y 
C04 N03 89B sing 32 n n 
C04 C05 89B sing 33 n n 
C37 O45 89B sing 34 n y 
C39 C40 89B doub 35 n y 
C39 C44 89B sing 36 n y 
C40 C41 89B sing 37 n y 
O45 C44 89B sing 38 n y 
C05 C06 89B sing 39 n n 
C44 C43 89B doub 40 n y 
C41 C42 89B doub 41 n y 
C43 C42 89B sing 42 n y 
C06 C12 89B doub 43 n y 
C06 C07 89B sing 44 n y 
C12 C11 89B sing 45 n y 
C07 C08 89B doub 46 n y 
C11 C09 89B doub 47 n y 
C08 C09 89B sing 48 n y 
C09 F10 89B sing 49 n n 
N03 H1 89B sing 50 n n 
C04 H2 89B sing 51 n n 
C05 H3 89B sing 52 n n 
C05 H4 89B sing 53 n n 
C07 H5 89B sing 54 n n 
C08 H6 89B sing 55 n n 
C11 H7 89B sing 56 n n 
C12 H8 89B sing 57 n n 
N14 H9 89B sing 58 n n 
C15 H10 89B sing 59 n n 
C16 H11 89B sing 60 n n 
C16 H12 89B sing 61 n n 
C17 H13 89B sing 62 n n 
C18 H14 89B sing 63 n n 
C18 H15 89B sing 64 n n 
C19 H16 89B sing 65 n n 
C19 H17 89B sing 66 n n 
C20 H18 89B sing 67 n n 
C20 H19 89B sing 68 n n 
N21 H20 89B sing 69 n n 
C24 H21 89B sing 70 n n 
O25 H22 89B sing 71 n n 
N27 H23 89B sing 72 n n 
C28 H24 89B sing 73 n n 
C28 H25 89B sing 74 n n 
C30 H26 89B sing 75 n n 
C31 H27 89B sing 76 n n 
C32 H28 89B sing 77 n n 
C33 H29 89B sing 78 n n 
C34 H30 89B sing 79 n n 
C38 H31 89B sing 80 n n 
C40 H32 89B sing 81 n n 
C41 H33 89B sing 82 n n 
C42 H34 89B sing 83 n n 
C43 H35 89B sing 84 n n 
#
_atom_sites.entry_id                     7W33 
_atom_sites.fract_transf_matrix[1][1]    0.009157 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009157 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010819 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 89B A 1 301 301 89B DC9 . 
C 3 HOH A 1 401 5 HOH HOH . 
C 3 HOH A 2 402 3 HOH HOH . 
C 3 HOH A 3 403 1 HOH HOH . 
C 3 HOH A 4 404 6 HOH HOH . 
C 3 HOH A 5 405 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 89B . . . B 2 -3.441 -16.448 21.691 1 68.13 ? O01 89B 301 A 1 
HETATM 2 C C02 89B . . . B 2 -3.763 -17.413 22.274 1 65.25 ? C02 89B 301 A 1 
HETATM 3 N N03 89B . . . B 2 -2.711 -18.418 22.72 1 63.33 ? N03 89B 301 A 1 
HETATM 4 C C04 89B . . . B 2 -1.25 -18.19 22.415 1 60.6 ? C04 89B 301 A 1 
HETATM 5 C C05 89B . . . B 2 -0.292 -19 23.351 1 59.25 ? C05 89B 301 A 1 
HETATM 6 C C06 89B . . . B 2 -0.386 -18.651 24.889 1 56.37 ? C06 89B 301 A 1 
HETATM 7 C C07 89B . . . B 2 -0.685 -19.608 25.829 1 59.6 ? C07 89B 301 A 1 
HETATM 8 C C08 89B . . . B 2 -0.766 -19.292 27.164 1 56.99 ? C08 89B 301 A 1 
HETATM 9 C C09 89B . . . B 2 -0.553 -17.973 27.604 1 56.74 ? C09 89B 301 A 1 
HETATM 10 C C11 89B . . . B 2 -0.261 -17.035 26.683 1 59.3 ? C11 89B 301 A 1 
HETATM 11 C C12 89B . . . B 2 -0.186 -17.36 25.329 1 60.29 ? C12 89B 301 A 1 
HETATM 12 C C13 89B . . . B 2 -0.86 -18.289 20.875 1 64.52 ? C13 89B 301 A 1 
HETATM 13 N N14 89B . . . B 2 0.29 -17.522 20.401 1 60.77 ? N14 89B 301 A 1 
HETATM 14 C C15 89B . . . B 2 0.787 -17.509 18.972 1 65.76 ? C15 89B 301 A 1 
HETATM 15 C C16 89B . . . B 2 -0.351 -17.872 17.889 1 69.81 ? C16 89B 301 A 1 
HETATM 16 C C17 89B . . . B 2 -1.59 -16.868 17.898 1 72.8 ? C17 89B 301 A 1 
HETATM 17 C C18 89B . . . B 2 -2.654 -17.376 17.117 1 71.47 ? C18 89B 301 A 1 
HETATM 18 C C19 89B . . . B 2 -2.478 -17.278 15.675 1 75.08 ? C19 89B 301 A 1 
HETATM 19 C C20 89B . . . B 2 -2.534 -15.867 15.252 1 62.74 ? C20 89B 301 A 1 
HETATM 20 N N21 89B . . . B 2 -1.636 -14.953 16.061 1 61.39 ? N21 89B 301 A 1 
HETATM 21 C C22 89B . . . B 2 -1.126 -15.425 17.407 1 74.31 ? C22 89B 301 A 1 
HETATM 22 O O23 89B . . . B 2 -0.386 -14.724 18.071 1 72.47 ? O23 89B 301 A 1 
HETATM 23 C C24 89B . . . B 2 2.111 -18.421 18.853 1 70.25 ? C24 89B 301 A 1 
HETATM 24 O O25 89B . . . B 2 3.208 -17.839 19.607 1 64.53 ? O25 89B 301 A 1 
HETATM 25 C C26 89B . . . B 2 2.52 -18.729 17.353 1 69.26 ? C26 89B 301 A 1 
HETATM 26 N N27 89B . . . B 2 3.316 -17.768 16.585 1 71.94 ? N27 89B 301 A 1 
HETATM 27 C C28 89B . . . B 2 3.691 -18.073 15.162 1 70.2 ? C28 89B 301 A 1 
HETATM 28 C C29 89B . . . B 2 2.495 -17.722 14.208 1 80.45 ? C29 89B 301 A 1 
HETATM 29 C C30 89B . . . B 2 2.291 -18.37 13.016 1 81.56 ? C30 89B 301 A 1 
HETATM 30 C C31 89B . . . B 2 1.241 -17.951 12.207 1 84.69 ? C31 89B 301 A 1 
HETATM 31 C C32 89B . . . B 2 0.426 -16.832 12.618 1 85.34 ? C32 89B 301 A 1 
HETATM 32 C C33 89B . . . B 2 0.669 -16.171 13.798 1 76.12 ? C33 89B 301 A 1 
HETATM 33 C C34 89B . . . B 2 1.709 -16.581 14.602 1 76.01 ? C34 89B 301 A 1 
HETATM 34 O O35 89B . . . B 2 2.181 -19.73 16.855 1 69.82 ? O35 89B 301 A 1 
HETATM 35 O O36 89B . . . B 2 -1.494 -18.978 20.167 1 63.51 ? O36 89B 301 A 1 
HETATM 36 C C37 89B . . . B 2 -5.176 -17.758 22.618 1 64.21 ? C37 89B 301 A 1 
HETATM 37 C C38 89B . . . B 2 -5.543 -18.873 23.336 1 66.65 ? C38 89B 301 A 1 
HETATM 38 C C39 89B . . . B 2 -6.946 -18.854 23.42 1 67.33 ? C39 89B 301 A 1 
HETATM 39 C C40 89B . . . B 2 -7.916 -19.672 24.005 1 65.1 ? C40 89B 301 A 1 
HETATM 40 C C41 89B . . . B 2 -9.219 -19.324 23.878 1 66.81 ? C41 89B 301 A 1 
HETATM 41 C C42 89B . . . B 2 -9.602 -18.17 23.176 1 66.63 ? C42 89B 301 A 1 
HETATM 42 C C43 89B . . . B 2 -8.638 -17.372 22.607 1 65.29 ? C43 89B 301 A 1 
HETATM 43 C C44 89B . . . B 2 -7.325 -17.718 22.73 1 65.78 ? C44 89B 301 A 1 
HETATM 44 O O45 89B . . . B 2 -6.263 -17.097 22.267 1 66.09 ? O45 89B 301 A 1 
HETATM 45 F F10 89B . . . B 2 -0.616 -17.644 28.92 1 61.56 ? F10 89B 301 A 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           45 
#