data_7W34 # _model_server_result.job_id ahQigq9y82SsxBweJeUSWA _model_server_result.datetime_utc '2024-11-21 12:00:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w34 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7W34 # _exptl.entry_id 7W34 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 602.72 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2S)-3-cyclohexyl-1-oxidanylidene-1-[[(2S,3S)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepiperidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-1-benzofuran-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W34 _cell.length_a 109.361 _cell.length_b 109.361 _cell.length_c 92.481 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W34 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 135 A CYS 22 1_555 A SG CYS 178 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 169 A CYS 56 1_555 A SG CYS 211 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 269 A CYS 156 1_555 A SG CYS 322 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A SG CYS 138 A CYS 25 1_555 B C33 89K . A 89K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? # _chem_comp.formula 'C34 H42 N4 O6' _chem_comp.formula_weight 602.72 _chem_comp.id 89K _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2S)-3-cyclohexyl-1-oxidanylidene-1-[[(2S,3S)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepiperidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-1-benzofuran-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C41 C40 89K doub 1 n y C41 C42 89K sing 2 n y C40 C39 89K sing 3 n y C42 C43 89K doub 4 n y C39 C38 89K doub 5 n y C43 C38 89K sing 6 n y C38 C37 89K sing 7 n n C28 C29 89K sing 8 n n C28 C27 89K sing 9 n n C29 N30 89K sing 10 n n C37 N36 89K sing 11 n n N36 C35 89K sing 12 n n N30 C31 89K sing 13 n n C27 C26 89K sing 14 n n O44 C35 89K doub 15 n n C35 C33 89K sing 16 n n C31 C26 89K sing 17 n n C31 O32 89K doub 18 n n C26 C25 89K sing 19 n n C25 C24 89K sing 20 n n C33 C24 89K sing 21 n n C33 O34 89K sing 22 n n C24 N23 89K sing 23 n n N23 C2 89K sing 24 n n O1 C2 89K doub 25 n n C2 C3 89K sing 26 n n O22 C12 89K doub 27 n n C14 C15 89K sing 28 n y C14 C13 89K doub 29 n y C12 C13 89K sing 30 n n C12 N11 89K sing 31 n n C16 C15 89K doub 32 n y C16 C17 89K sing 33 n y C15 C20 89K sing 34 n y C13 O21 89K sing 35 n y C3 N11 89K sing 36 n n C3 C4 89K sing 37 n n C17 C18 89K doub 38 n y O21 C20 89K sing 39 n y C20 C19 89K doub 40 n y C4 C5 89K sing 41 n n C18 C19 89K sing 42 n y C5 C6 89K sing 43 n n C5 C10 89K sing 44 n n C6 C7 89K sing 45 n n C10 C9 89K sing 46 n n C7 C8 89K sing 47 n n C9 C8 89K sing 48 n n C3 H1 89K sing 49 n n C4 H2 89K sing 50 n n C4 H3 89K sing 51 n n C5 H4 89K sing 52 n n C6 H5 89K sing 53 n n C6 H6 89K sing 54 n n C7 H7 89K sing 55 n n C7 H8 89K sing 56 n n C8 H9 89K sing 57 n n C8 H10 89K sing 58 n n C9 H11 89K sing 59 n n C9 H12 89K sing 60 n n C10 H13 89K sing 61 n n C10 H14 89K sing 62 n n N11 H15 89K sing 63 n n C14 H16 89K sing 64 n n C16 H17 89K sing 65 n n C17 H18 89K sing 66 n n C18 H19 89K sing 67 n n C19 H20 89K sing 68 n n N23 H21 89K sing 69 n n C24 H22 89K sing 70 n n C25 H23 89K sing 71 n n C25 H24 89K sing 72 n n C26 H25 89K sing 73 n n C27 H26 89K sing 74 n n C27 H27 89K sing 75 n n C28 H28 89K sing 76 n n C28 H29 89K sing 77 n n C29 H30 89K sing 78 n n C29 H31 89K sing 79 n n N30 H32 89K sing 80 n n C33 H33 89K sing 81 n n O34 H34 89K sing 82 n n N36 H35 89K sing 83 n n C37 H36 89K sing 84 n n C37 H37 89K sing 85 n n C39 H38 89K sing 86 n n C40 H39 89K sing 87 n n C41 H40 89K sing 88 n n C42 H41 89K sing 89 n n C43 H42 89K sing 90 n n # _atom_sites.entry_id 7W34 _atom_sites.fract_transf_matrix[1][1] 0.009144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 89K _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 301 _pdbx_nonpoly_scheme.pdb_mon_id 89K _pdbx_nonpoly_scheme.auth_mon_id DC3 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 89K . . . B 2 -1.674 -19.115 21.044 1 55.79 ? O1 89K 301 A 1 HETATM 2 C C2 89K . . . B 2 -0.87 -18.453 21.598 1 55.56 ? C2 89K 301 A 1 HETATM 3 C C3 89K . . . B 2 -1.078 -18.117 23.081 1 53.11 ? C3 89K 301 A 1 HETATM 4 C C4 89K . . . B 2 -0.252 -19.056 23.955 1 51.57 ? C4 89K 301 A 1 HETATM 5 C C5 89K . . . B 2 -0.055 -18.648 25.424 1 51.7 ? C5 89K 301 A 1 HETATM 6 C C6 89K . . . B 2 -0.445 -17.192 25.681 1 52.36 ? C6 89K 301 A 1 HETATM 7 C C7 89K . . . B 2 -0.207 -16.741 27.123 1 52.9 ? C7 89K 301 A 1 HETATM 8 C C8 89K . . . B 2 -0.407 -17.848 28.151 1 43.53 ? C8 89K 301 A 1 HETATM 9 C C9 89K . . . B 2 -1.324 -18.951 27.634 1 48.05 ? C9 89K 301 A 1 HETATM 10 C C10 89K . . . B 2 -0.817 -19.606 26.345 1 50.6 ? C10 89K 301 A 1 HETATM 11 N N11 89K . . . B 2 -2.482 -18.314 23.326 1 54.87 ? N11 89K 301 A 1 HETATM 12 C C12 89K . . . B 2 -3.456 -17.49 22.641 1 58.31 ? C12 89K 301 A 1 HETATM 13 C C13 89K . . . B 2 -4.934 -17.743 22.903 1 61.49 ? C13 89K 301 A 1 HETATM 14 C C14 89K . . . B 2 -5.43 -18.761 23.71 1 59.26 ? C14 89K 301 A 1 HETATM 15 C C15 89K . . . B 2 -6.871 -18.675 23.69 1 60.85 ? C15 89K 301 A 1 HETATM 16 C C16 89K . . . B 2 -7.93 -19.388 24.287 1 60 ? C16 89K 301 A 1 HETATM 17 C C17 89K . . . B 2 -9.249 -19.017 24.041 1 63.02 ? C17 89K 301 A 1 HETATM 18 C C18 89K . . . B 2 -9.522 -17.939 23.203 1 64.24 ? C18 89K 301 A 1 HETATM 19 C C19 89K . . . B 2 -8.482 -17.236 22.616 1 62.42 ? C19 89K 301 A 1 HETATM 20 C C20 89K . . . B 2 -7.136 -17.613 22.865 1 63.98 ? C20 89K 301 A 1 HETATM 21 O O21 89K . . . B 2 -5.965 -17.078 22.404 1 66.06 ? O21 89K 301 A 1 HETATM 22 O O22 89K . . . B 2 -3.115 -16.644 21.886 1 59.39 ? O22 89K 301 A 1 HETATM 23 N N23 89K . . . B 2 0.293 -17.956 20.871 1 58.95 ? N23 89K 301 A 1 HETATM 24 C C24 89K . . . B 2 0.485 -18.278 19.449 1 57.46 ? C24 89K 301 A 1 HETATM 25 C C25 89K . . . B 2 0.396 -17.012 18.623 1 62.94 ? C25 89K 301 A 1 HETATM 26 C C26 89K . . . B 2 -1.08 -16.475 18.399 1 66.07 ? C26 89K 301 A 1 HETATM 27 C C27 89K . . . B 2 -1.71 -17.284 17.39 1 66.95 ? C27 89K 301 A 1 HETATM 28 C C28 89K . . . B 2 -1.742 -16.735 16.042 1 64.38 ? C28 89K 301 A 1 HETATM 29 C C29 89K . . . B 2 -2.457 -15.451 16.019 1 60.82 ? C29 89K 301 A 1 HETATM 30 N N30 89K . . . B 2 -1.664 -14.413 16.811 1 66.44 ? N30 89K 301 A 1 HETATM 31 C C31 89K . . . B 2 -0.94 -14.931 18.056 1 65.31 ? C31 89K 301 A 1 HETATM 32 O O32 89K . . . B 2 -0.295 -14.214 18.743 1 62.5 ? O32 89K 301 A 1 HETATM 33 C C33 89K . . . B 2 1.862 -18.913 19.293 1 59.98 ? C33 89K 301 A 1 HETATM 34 O O34 89K . . . B 2 2.895 -18.019 19.598 1 60.24 ? O34 89K 301 A 1 HETATM 35 C C35 89K . . . B 2 2.038 -19.659 17.956 1 64.79 ? C35 89K 301 A 1 HETATM 36 N N36 89K . . . B 2 2.831 -19.207 16.821 1 65.84 ? N36 89K 301 A 1 HETATM 37 C C37 89K . . . B 2 3.52 -17.938 16.739 1 61.55 ? C37 89K 301 A 1 HETATM 38 C C38 89K . . . B 2 2.904 -17.358 15.468 1 67.09 ? C38 89K 301 A 1 HETATM 39 C C39 89K . . . B 2 3.137 -18.002 14.257 1 66.43 ? C39 89K 301 A 1 HETATM 40 C C40 89K . . . B 2 2.571 -17.515 13.09 1 67.59 ? C40 89K 301 A 1 HETATM 41 C C41 89K . . . B 2 1.759 -16.397 13.138 1 69.86 ? C41 89K 301 A 1 HETATM 42 C C42 89K . . . B 2 1.511 -15.763 14.351 1 66.98 ? C42 89K 301 A 1 HETATM 43 C C43 89K . . . B 2 2.078 -16.251 15.521 1 66.65 ? C43 89K 301 A 1 HETATM 44 O O44 89K . . . B 2 1.527 -20.72 17.848 1 70.89 ? O44 89K 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 411 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #