data_7W37
#
_model_server_result.job_id            Hhq8nCUC7kyQfeCw2gbjJw 
_model_server_result.datetime_utc      '2024-11-29 07:00:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7w37 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"ZA","auth_seq_id":501}' 
#
_entry.id    7W37 
#
_exptl.entry_id    7W37 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          36 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7W37 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7W37 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    47-meric 
_pdbx_struct_assembly.oligomeric_count      47 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 36 ZA N N 
? 36 FB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 236 A CYS 236 1_555 A SG CYS 270 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 U SG CYS 633 U CYS 633 1_555 U SG CYS 659 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A OG1 THR 223 A THR 223 1_555 WA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? 
metalc ? metalc2 VA O3G ATP . A ATP 501 1_555 WA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.712 ? 
metalc ? metalc3 VA O2B ATP . A ATP 501 1_555 WA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? 
metalc ? metalc4 B OG1 THR 233 B THR 233 1_555 YA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc5 XA O1G ATP . B ATP 501 1_555 YA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc6 XA O1B ATP . B ATP 501 1_555 YA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc7 ZA O2B ADP . C ADP 501 1_555 AB MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc8 ZA O3B ADP . C ADP 501 1_555 AB MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc9 D OG1 THR 213 D THR 213 1_555 CB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc10 BB O3G ATP . D ATP 501 1_555 CB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc11 BB O2B ATP . D ATP 501 1_555 CB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc12 E OG1 THR 195 E THR 181 1_555 EB MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc13 DB O2G ATP . E ATP 501 1_555 EB MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.745 ? 
metalc ? metalc14 DB O2B ATP . E ATP 501 1_555 EB MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc15 F OG1 THR 234 F THR 234 1_555 GB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc16 FB O1B ADP . F ADP 501 1_555 GB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc17 FB O2B ADP . F ADP 501 1_555 GB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
metalc ? metalc18 CA NE2 HIS 113 c HIS 113 1_555 HB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc19 CA NE2 HIS 115 c HIS 115 1_555 HB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc20 CA OD2 ASP 126 c ASP 126 1_555 HB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     7W37 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
VA 34 ATP A 1 501 501 ATP ATP . 
WA 35 MG A 1 502 502 MG MG . 
XA 34 ATP B 1 501 501 ATP ATP . 
YA 35 MG B 1 502 502 MG MG . 
ZA 36 ADP C 1 501 501 ADP ADP . 
AB 35 MG C 1 502 502 MG MG . 
BB 34 ATP D 1 501 501 ATP ATP . 
CB 35 MG D 1 502 502 MG MG . 
DB 34 ATP E 1 501 501 ATP ATP . 
EB 35 MG E 1 502 502 MG MG . 
FB 36 ADP F 1 501 501 ADP ADP . 
GB 35 MG F 1 502 502 MG MG . 
HB 37 ZN c 1 401 401 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . ZA 36 241.673 197.175 213.76 1 82.43 ? PB ADP 501 C 1 
HETATM 2 O O1B ADP . . . ZA 36 241.455 196.071 212.759 1 82.43 ? O1B ADP 501 C 1 
HETATM 3 O O2B ADP . . . ZA 36 240.42 197.646 214.453 1 82.43 ? O2B ADP 501 C 1 
HETATM 4 O O3B ADP . . . ZA 36 242.568 198.286 213.274 1 82.43 ? O3B ADP 501 C 1 
HETATM 5 P PA ADP . . . ZA 36 244.075 196.119 214.739 1 82.43 ? PA ADP 501 C 1 
HETATM 6 O O1A ADP . . . ZA 36 244.216 195.242 213.521 1 82.43 ? O1A ADP 501 C 1 
HETATM 7 O O2A ADP . . . ZA 36 244.85 197.408 214.842 1 82.43 ? O2A ADP 501 C 1 
HETATM 8 O O3A ADP . . . ZA 36 242.517 196.467 214.93 1 82.43 ? O3A ADP 501 C 1 
HETATM 9 O O5' ADP . . . ZA 36 244.397 195.238 216.045 1 82.43 ? O5' ADP 501 C 1 
HETATM 10 C C5' ADP . . . ZA 36 245.417 195.654 216.948 1 82.43 ? C5' ADP 501 C 1 
HETATM 11 C C4' ADP . . . ZA 36 245.94 194.468 217.748 1 82.43 ? C4' ADP 501 C 1 
HETATM 12 O O4' ADP . . . ZA 36 244.885 193.552 218.042 1 82.43 ? O4' ADP 501 C 1 
HETATM 13 C C3' ADP . . . ZA 36 246.99 193.695 216.971 1 82.43 ? C3' ADP 501 C 1 
HETATM 14 O O3' ADP . . . ZA 36 248.298 194.007 217.455 1 82.43 ? O3' ADP 501 C 1 
HETATM 15 C C2' ADP . . . ZA 36 246.677 192.236 217.214 1 82.43 ? C2' ADP 501 C 1 
HETATM 16 O O2' ADP . . . ZA 36 247.671 191.657 218.062 1 82.43 ? O2' ADP 501 C 1 
HETATM 17 C C1' ADP . . . ZA 36 245.324 192.199 217.901 1 82.43 ? C1' ADP 501 C 1 
HETATM 18 N N9 ADP . . . ZA 36 244.347 191.469 217.057 1 82.43 ? N9 ADP 501 C 1 
HETATM 19 C C8 ADP . . . ZA 36 243.206 191.996 216.584 1 82.43 ? C8 ADP 501 C 1 
HETATM 20 N N7 ADP . . . ZA 36 242.515 191.092 215.848 1 82.43 ? N7 ADP 501 C 1 
HETATM 21 C C5 ADP . . . ZA 36 243.223 189.952 215.844 1 82.43 ? C5 ADP 501 C 1 
HETATM 22 C C6 ADP . . . ZA 36 243.06 188.607 215.254 1 82.43 ? C6 ADP 501 C 1 
HETATM 23 N N6 ADP . . . ZA 36 241.975 188.3 214.506 1 82.43 ? N6 ADP 501 C 1 
HETATM 24 N N1 ADP . . . ZA 36 244.027 187.696 215.488 1 82.43 ? N1 ADP 501 C 1 
HETATM 25 C C2 ADP . . . ZA 36 245.107 187.992 216.231 1 82.43 ? C2 ADP 501 C 1 
HETATM 26 N N3 ADP . . . ZA 36 245.318 189.193 216.796 1 82.43 ? N3 ADP 501 C 1 
HETATM 27 C C4 ADP . . . ZA 36 244.429 190.202 216.645 1 82.43 ? C4 ADP 501 C 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    197 
_model_server_stats.query_time_ms           441 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#