data_7W38 # _model_server_result.job_id NiTdfpqkMjfnrUXoM8HR3Q _model_server_result.datetime_utc '2024-10-19 14:18:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":501}' # _entry.id 7W38 # _exptl.entry_id 7W38 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 35 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W38 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 48-meric _pdbx_struct_assembly.oligomeric_count 48 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 35 WA N N ? 35 YA N N ? 35 CB N N ? 35 EB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 236 A CYS 236 1_555 A SG CYS 270 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 T SG CYS 633 U CYS 633 1_555 T SG CYS 659 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OG1 THR 223 A THR 223 1_555 XA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? metalc ? metalc2 WA O1G ATP . A ATP 501 1_555 XA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? metalc ? metalc3 WA O2B ATP . A ATP 501 1_555 XA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc4 WA O1A ATP . A ATP 501 1_555 XA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? metalc ? metalc5 B OG1 THR 233 B THR 233 1_555 ZA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc6 YA O2G ATP . B ATP 501 1_555 ZA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc7 YA O1B ATP . B ATP 501 1_555 ZA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc8 YA O1A ATP . B ATP 501 1_555 ZA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc9 AB O2B ADP . C ADP 501 1_555 BB MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc10 D OG1 THR 213 D THR 213 1_555 DB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc11 CB O2G ATP . D ATP 501 1_555 DB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc12 CB O3G ATP . D ATP 501 1_555 DB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc13 CB O2B ATP . D ATP 501 1_555 DB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc14 CB O3B ATP . D ATP 501 1_555 DB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc15 E OG1 THR 195 E THR 181 1_555 FB MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc16 EB O1G ATP . E ATP 501 1_555 FB MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc17 EB O3G ATP . E ATP 501 1_555 FB MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc18 EB O2B ATP . E ATP 501 1_555 FB MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc19 SA NE2 HIS 113 c HIS 113 1_555 GB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc20 SA NE2 HIS 115 c HIS 115 1_555 GB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc21 SA OD2 ASP 126 c ASP 126 1_555 GB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc22 TA OG1 THR 234 F THR 234 1_555 IB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc23 HB O3B ADP . F ADP 501 1_555 IB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7W38 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code WA 35 ATP A 1 501 501 ATP ATP . XA 36 MG A 1 502 502 MG MG . YA 35 ATP B 1 501 501 ATP ATP . ZA 36 MG B 1 502 502 MG MG . AB 37 ADP C 1 501 501 ADP ADP . BB 36 MG C 1 502 502 MG MG . CB 35 ATP D 1 501 501 ATP ATP . DB 36 MG D 1 502 502 MG MG . EB 35 ATP E 1 501 501 ATP ATP . FB 36 MG E 1 502 502 MG MG . GB 38 ZN c 1 401 401 ZN ZN . HB 37 ADP F 1 501 501 ADP ADP . IB 36 MG F 1 502 502 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . YA 35 227.987 211.498 188.47 1 69.53 ? PG ATP 501 B 1 HETATM 2 O O1G ATP . . . YA 35 227.551 210.617 189.61 1 69.53 ? O1G ATP 501 B 1 HETATM 3 O O2G ATP . . . YA 35 229.444 211.889 188.538 1 69.53 ? O2G ATP 501 B 1 HETATM 4 O O3G ATP . . . YA 35 227.033 212.632 188.187 1 69.53 ? O3G ATP 501 B 1 HETATM 5 P PB ATP . . . YA 35 227.928 211.11 185.675 1 69.53 ? PB ATP 501 B 1 HETATM 6 O O1B ATP . . . YA 35 228.877 212.278 185.594 1 69.53 ? O1B ATP 501 B 1 HETATM 7 O O2B ATP . . . YA 35 226.511 211.294 185.202 1 69.53 ? O2B ATP 501 B 1 HETATM 8 O O3B ATP . . . YA 35 227.877 210.538 187.181 1 69.53 ? O3B ATP 501 B 1 HETATM 9 P PA ATP . . . YA 35 229.92 209.133 185.211 1 69.53 ? PA ATP 501 B 1 HETATM 10 O O1A ATP . . . YA 35 230.642 209.823 186.344 1 69.53 ? O1A ATP 501 B 1 HETATM 11 O O2A ATP . . . YA 35 230.646 208.855 183.916 1 69.53 ? O2A ATP 501 B 1 HETATM 12 O O3A ATP . . . YA 35 228.551 209.894 184.825 1 69.53 ? O3A ATP 501 B 1 HETATM 13 O O5' ATP . . . YA 35 229.393 207.735 185.793 1 69.53 ? O5' ATP 501 B 1 HETATM 14 C C5' ATP . . . YA 35 228.471 206.981 185.026 1 69.53 ? C5' ATP 501 B 1 HETATM 15 C C4' ATP . . . YA 35 228.942 205.543 184.909 1 69.53 ? C4' ATP 501 B 1 HETATM 16 O O4' ATP . . . YA 35 227.872 204.799 184.342 1 69.53 ? O4' ATP 501 B 1 HETATM 17 C C3' ATP . . . YA 35 230.143 205.38 183.996 1 69.53 ? C3' ATP 501 B 1 HETATM 18 O O3' ATP . . . YA 35 231.172 204.663 184.69 1 69.53 ? O3' ATP 501 B 1 HETATM 19 C C2' ATP . . . YA 35 229.625 204.665 182.755 1 69.53 ? C2' ATP 501 B 1 HETATM 20 O O2' ATP . . . YA 35 230.335 203.46 182.434 1 69.53 ? O2' ATP 501 B 1 HETATM 21 C C1' ATP . . . YA 35 228.173 204.324 183.034 1 69.53 ? C1' ATP 501 B 1 HETATM 22 N N9 ATP . . . YA 35 227.278 204.974 182.043 1 69.53 ? N9 ATP 501 B 1 HETATM 23 C C8 ATP . . . YA 35 226.51 206.067 182.226 1 69.53 ? C8 ATP 501 B 1 HETATM 24 N N7 ATP . . . YA 35 225.819 206.383 181.107 1 69.53 ? N7 ATP 501 B 1 HETATM 25 C C5 ATP . . . YA 35 226.141 205.471 180.179 1 69.53 ? C5 ATP 501 B 1 HETATM 26 C C6 ATP . . . YA 35 225.774 205.211 178.772 1 69.53 ? C6 ATP 501 B 1 HETATM 27 N N6 ATP . . . YA 35 224.899 206.006 178.112 1 69.53 ? N6 ATP 501 B 1 HETATM 28 N N1 ATP . . . YA 35 226.34 204.145 178.172 1 69.53 ? N1 ATP 501 B 1 HETATM 29 C C2 ATP . . . YA 35 227.213 203.343 178.795 1 69.53 ? C2 ATP 501 B 1 HETATM 30 N N3 ATP . . . YA 35 227.59 203.518 180.07 1 69.53 ? N3 ATP 501 B 1 HETATM 31 C C4 ATP . . . YA 35 227.098 204.545 180.8 1 69.53 ? C4 ATP 501 B 1 # _model_server_stats.io_time_ms 229 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 175 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #