data_7W39 # _model_server_result.job_id 87ZK5iENIOyu0Fo6YDylMw _model_server_result.datetime_utc '2024-10-20 08:18:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w39 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GB","auth_seq_id":501}' # _entry.id 7W39 # _exptl.entry_id 7W39 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 38 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W39 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W39 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 49-meric _pdbx_struct_assembly.oligomeric_count 49 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 38 BB N N ? 38 GB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 236 A CYS 236 1_555 A SG CYS 270 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OG1 THR 223 A THR 223 1_555 YA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 XA O1G ATP . A ATP 501 1_555 YA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 XA O3G ATP . A ATP 501 1_555 YA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc4 XA O2B ATP . A ATP 501 1_555 YA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc5 XA O3B ATP . A ATP 501 1_555 YA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc6 B OG1 THR 233 B THR 233 1_555 AB MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc7 ZA O2G ATP . B ATP 501 1_555 AB MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc8 ZA O1B ATP . B ATP 501 1_555 AB MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc9 ZA O3B ATP . B ATP 501 1_555 AB MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc10 D OG1 THR 213 D THR 213 1_555 DB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc11 CB O1G ATP . D ATP 501 1_555 DB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc12 CB O1B ATP . D ATP 501 1_555 DB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc13 CB O2B ATP . D ATP 501 1_555 DB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? metalc ? metalc14 CB O3B ATP . D ATP 501 1_555 DB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc15 E OG1 THR 195 E THR 181 1_555 FB MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc16 EB O2G ATP . E ATP 501 1_555 FB MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc17 EB O2B ATP . E ATP 501 1_555 FB MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc18 F OG1 THR 234 F THR 234 1_555 HB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc19 GB O1B ADP . F ADP 501 1_555 HB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc20 GB O3B ADP . F ADP 501 1_555 HB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc21 CA NE2 HIS 113 c HIS 113 1_555 IB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc22 CA NE2 HIS 115 c HIS 115 1_555 IB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc23 CA OD2 ASP 126 c ASP 126 1_555 IB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7W39 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code XA 36 ATP A 1 501 501 ATP ATP . YA 37 MG A 1 502 502 MG MG . ZA 36 ATP B 1 501 501 ATP ATP . AB 37 MG B 1 502 502 MG MG . BB 38 ADP C 1 501 501 ADP ADP . CB 36 ATP D 1 501 501 ATP ATP . DB 37 MG D 1 502 502 MG MG . EB 36 ATP E 1 501 501 ATP ATP . FB 37 MG E 1 502 502 MG MG . GB 38 ADP F 1 501 501 ADP ADP . HB 37 MG F 1 502 502 MG MG . IB 39 ZN c 1 401 401 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . GB 38 233.034 261.995 209.571 1 78.62 ? PB ADP 501 F 1 HETATM 2 O O1B ADP . . . GB 38 233.045 261.019 208.424 1 78.62 ? O1B ADP 501 F 1 HETATM 3 O O2B ADP . . . GB 38 231.749 262.035 210.356 1 78.62 ? O2B ADP 501 F 1 HETATM 4 O O3B ADP . . . GB 38 234.285 261.953 210.413 1 78.62 ? O3B ADP 501 F 1 HETATM 5 P PA ADP . . . GB 38 232.819 263.565 207.302 1 78.62 ? PA ADP 501 F 1 HETATM 6 O O1A ADP . . . GB 38 234.041 263.053 206.585 1 78.62 ? O1A ADP 501 F 1 HETATM 7 O O2A ADP . . . GB 38 231.467 262.977 206.992 1 78.62 ? O2A ADP 501 F 1 HETATM 8 O O3A ADP . . . GB 38 233.099 263.44 208.874 1 78.62 ? O3A ADP 501 F 1 HETATM 9 O O5' ADP . . . GB 38 232.741 265.138 207.007 1 78.62 ? O5' ADP 501 F 1 HETATM 10 C C5' ADP . . . GB 38 233.321 265.581 205.787 1 78.62 ? C5' ADP 501 F 1 HETATM 11 C C4' ADP . . . GB 38 232.391 266.497 205.002 1 78.62 ? C4' ADP 501 F 1 HETATM 12 O O4' ADP . . . GB 38 231.171 266.766 205.694 1 78.62 ? O4' ADP 501 F 1 HETATM 13 C C3' ADP . . . GB 38 233.064 267.828 204.745 1 78.62 ? C3' ADP 501 F 1 HETATM 14 O O3' ADP . . . GB 38 233.338 267.964 203.351 1 78.62 ? O3' ADP 501 F 1 HETATM 15 C C2' ADP . . . GB 38 232.059 268.871 205.163 1 78.62 ? C2' ADP 501 F 1 HETATM 16 O O2' ADP . . . GB 38 231.809 269.742 204.064 1 78.62 ? O2' ADP 501 F 1 HETATM 17 C C1' ADP . . . GB 38 230.783 268.129 205.512 1 78.62 ? C1' ADP 501 F 1 HETATM 18 N N9 ADP . . . GB 38 230.183 268.615 206.779 1 78.62 ? N9 ADP 501 F 1 HETATM 19 C C8 ADP . . . GB 38 229.721 267.797 207.738 1 78.62 ? C8 ADP 501 F 1 HETATM 20 N N7 ADP . . . GB 38 229.217 268.488 208.786 1 78.62 ? N7 ADP 501 F 1 HETATM 21 C C5 ADP . . . GB 38 229.347 269.79 208.499 1 78.62 ? C5 ADP 501 F 1 HETATM 22 C C6 ADP . . . GB 38 229.013 271.052 209.185 1 78.62 ? C6 ADP 501 F 1 HETATM 23 N N6 ADP . . . GB 38 228.431 271.047 210.406 1 78.62 ? N6 ADP 501 F 1 HETATM 24 N N1 ADP . . . GB 38 229.308 272.207 208.559 1 78.62 ? N1 ADP 501 F 1 HETATM 25 C C2 ADP . . . GB 38 229.885 272.22 207.347 1 78.62 ? C2 ADP 501 F 1 HETATM 26 N N3 ADP . . . GB 38 230.212 271.11 206.669 1 78.62 ? N3 ADP 501 F 1 HETATM 27 C C4 ADP . . . GB 38 229.976 269.877 207.174 1 78.62 ? C4 ADP 501 F 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 156 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #