data_7W3A # _model_server_result.job_id 3bIRqPnPyN8BqGAnbSEdUg _model_server_result.datetime_utc '2024-10-19 14:37:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":501}' # _entry.id 7W3A # _exptl.entry_id 7W3A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 36 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W3A _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 49-meric _pdbx_struct_assembly.oligomeric_count 49 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 36 XA N N ? 36 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 236 A CYS 236 1_555 A SG CYS 270 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 LA SG CYS 633 U CYS 633 1_555 LA SG CYS 659 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 TA NE2 HIS 113 c HIS 113 1_555 DB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc2 TA NE2 HIS 115 c HIS 115 1_555 DB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc3 TA OD2 ASP 126 c ASP 126 1_555 DB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7W3A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code XA 36 ADP A 1 501 501 ADP ADP . YA 36 ADP B 1 501 501 ADP ADP . ZA 37 ATP C 1 501 501 ATP ATP . AB 37 ATP D 1 501 501 ATP ATP . BB 37 ATP E 1 501 501 ATP ATP . CB 37 ATP F 1 501 501 ATP ATP . DB 38 ZN c 1 401 401 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . YA 36 232.662 230.375 181.249 1 139.82 ? PB ADP 501 B 1 HETATM 2 O O1B ADP . . . YA 36 231.738 231.072 180.281 1 139.82 ? O1B ADP 501 B 1 HETATM 3 O O2B ADP . . . YA 36 233.392 231.307 182.184 1 139.82 ? O2B ADP 501 B 1 HETATM 4 O O3B ADP . . . YA 36 232.065 229.163 181.92 1 139.82 ? O3B ADP 501 B 1 HETATM 5 P PA ADP . . . YA 36 233.498 228.79 179.097 1 139.82 ? PA ADP 501 B 1 HETATM 6 O O1A ADP . . . YA 36 232.732 229.577 178.063 1 139.82 ? O1A ADP 501 B 1 HETATM 7 O O2A ADP . . . YA 36 232.942 227.505 179.657 1 139.82 ? O2A ADP 501 B 1 HETATM 8 O O3A ADP . . . YA 36 233.833 229.772 180.325 1 139.82 ? O3A ADP 501 B 1 HETATM 9 O O5' ADP . . . YA 36 234.934 228.438 178.472 1 139.82 ? O5' ADP 501 B 1 HETATM 10 C C5' ADP . . . YA 36 235.043 228.315 177.058 1 139.82 ? C5' ADP 501 B 1 HETATM 11 C C4' ADP . . . YA 36 235.199 226.854 176.66 1 139.82 ? C4' ADP 501 B 1 HETATM 12 O O4' ADP . . . YA 36 234.073 226.47 175.867 1 139.82 ? O4' ADP 501 B 1 HETATM 13 C C3' ADP . . . YA 36 236.449 226.64 175.826 1 139.82 ? C3' ADP 501 B 1 HETATM 14 O O3' ADP . . . YA 36 237.243 225.6 176.402 1 139.82 ? O3' ADP 501 B 1 HETATM 15 C C2' ADP . . . YA 36 235.967 226.216 174.455 1 139.82 ? C2' ADP 501 B 1 HETATM 16 O O2' ADP . . . YA 36 236.571 224.975 174.083 1 139.82 ? O2' ADP 501 B 1 HETATM 17 C C1' ADP . . . YA 36 234.46 226.051 174.557 1 139.82 ? C1' ADP 501 B 1 HETATM 18 N N9 ADP . . . YA 36 233.815 226.958 173.58 1 139.82 ? N9 ADP 501 B 1 HETATM 19 C C8 ADP . . . YA 36 232.995 227.972 173.905 1 139.82 ? C8 ADP 501 B 1 HETATM 20 N N7 ADP . . . YA 36 232.559 228.626 172.801 1 139.82 ? N7 ADP 501 B 1 HETATM 21 C C5 ADP . . . YA 36 233.108 228.022 171.735 1 139.82 ? C5 ADP 501 B 1 HETATM 22 C C6 ADP . . . YA 36 233.061 228.214 170.269 1 139.82 ? C6 ADP 501 B 1 HETATM 23 N N6 ADP . . . YA 36 232.32 229.206 169.72 1 139.82 ? N6 ADP 501 B 1 HETATM 24 N N1 ADP . . . YA 36 233.78 227.367 169.501 1 139.82 ? N1 ADP 501 B 1 HETATM 25 C C2 ADP . . . YA 36 234.517 226.379 170.041 1 139.82 ? C2 ADP 501 B 1 HETATM 26 N N3 ADP . . . YA 36 234.604 226.148 171.363 1 139.82 ? N3 ADP 501 B 1 HETATM 27 C C4 ADP . . . YA 36 233.933 226.919 172.25 1 139.82 ? C4 ADP 501 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 433 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #