data_7W3C # _model_server_result.job_id HOLT3S2iPygmPw38uVJSBQ _model_server_result.datetime_utc '2024-10-19 14:22:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AB","auth_seq_id":501}' # _entry.id 7W3C # _exptl.entry_id 7W3C _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 37 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W3C _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 49-meric _pdbx_struct_assembly.oligomeric_count 49 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 37 AB N N ? 37 BB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 F SG CYS 236 A CYS 236 1_555 F SG CYS 270 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 U SG CYS 633 U CYS 633 1_555 U SG CYS 659 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 AA NE2 HIS 113 c HIS 113 1_555 CB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc2 AA NE2 HIS 115 c HIS 115 1_555 CB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc3 AA OD2 ASP 126 c ASP 126 1_555 CB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7W3C _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code XA 36 ATP B 1 501 501 ATP ATP . YA 36 ATP C 1 501 501 ATP ATP . ZA 36 ATP D 1 501 501 ATP ATP . AB 37 ADP E 1 501 501 ADP ADP . BB 37 ADP F 1 501 501 ADP ADP . CB 38 ZN c 1 401 401 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . AB 37 246.397 235.217 249.907 1 238.68 ? PB ADP 501 E 1 HETATM 2 O O1B ADP . . . AB 37 247.029 234.224 248.967 1 238.68 ? O1B ADP 501 E 1 HETATM 3 O O2B ADP . . . AB 37 245.674 236.317 249.173 1 238.68 ? O2B ADP 501 E 1 HETATM 4 O O3B ADP . . . AB 37 245.656 234.595 251.067 1 238.68 ? O3B ADP 501 E 1 HETATM 5 P PA ADP . . . AB 37 247.939 236.29 252.1 1 238.68 ? PA ADP 501 E 1 HETATM 6 O O1A ADP . . . AB 37 249.102 237.243 252.111 1 238.68 ? O1A ADP 501 E 1 HETATM 7 O O2A ADP . . . AB 37 248.052 235.022 252.895 1 238.68 ? O2A ADP 501 E 1 HETATM 8 O O3A ADP . . . AB 37 247.657 235.992 250.541 1 238.68 ? O3A ADP 501 E 1 HETATM 9 O O5' ADP . . . AB 37 246.638 237.078 252.598 1 238.68 ? O5' ADP 501 E 1 HETATM 10 C C5' ADP . . . AB 37 246.57 238.473 252.352 1 238.68 ? C5' ADP 501 E 1 HETATM 11 C C4' ADP . . . AB 37 246.626 239.296 253.637 1 238.68 ? C4' ADP 501 E 1 HETATM 12 O O4' ADP . . . AB 37 246.307 238.581 254.839 1 238.68 ? O4' ADP 501 E 1 HETATM 13 C C3' ADP . . . AB 37 247.999 239.879 253.91 1 238.68 ? C3' ADP 501 E 1 HETATM 14 O O3' ADP . . . AB 37 248.249 240.995 253.05 1 238.68 ? O3' ADP 501 E 1 HETATM 15 C C2' ADP . . . AB 37 247.906 240.225 255.379 1 238.68 ? C2' ADP 501 E 1 HETATM 16 O O2' ADP . . . AB 37 247.528 241.573 255.595 1 238.68 ? O2' ADP 501 E 1 HETATM 17 C C1' ADP . . . AB 37 246.778 239.381 255.932 1 238.68 ? C1' ADP 501 E 1 HETATM 18 N N9 ADP . . . AB 37 247.24 238.544 257.051 1 238.68 ? N9 ADP 501 E 1 HETATM 19 C C8 ADP . . . AB 37 248.431 238.666 257.642 1 238.68 ? C8 ADP 501 E 1 HETATM 20 N N7 ADP . . . AB 37 248.538 237.771 258.643 1 238.68 ? N7 ADP 501 E 1 HETATM 21 C C5 ADP . . . AB 37 247.433 237.03 258.672 1 238.68 ? C5 ADP 501 E 1 HETATM 22 C C6 ADP . . . AB 37 246.908 235.907 259.464 1 238.68 ? C6 ADP 501 E 1 HETATM 23 N N6 ADP . . . AB 37 247.64 235.393 260.409 1 238.68 ? N6 ADP 501 E 1 HETATM 24 N N1 ADP . . . AB 37 245.697 235.4 259.285 1 238.68 ? N1 ADP 501 E 1 HETATM 25 C C2 ADP . . . AB 37 244.962 235.956 258.354 1 238.68 ? C2 ADP 501 E 1 HETATM 26 N N3 ADP . . . AB 37 245.388 236.946 257.544 1 238.68 ? N3 ADP 501 E 1 HETATM 27 C C4 ADP . . . AB 37 246.571 237.558 257.649 1 238.68 ? C4 ADP 501 E 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 512 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 27 #