data_7W3K # _model_server_result.job_id NABcqPtJHE1H4OOEwycvHw _model_server_result.datetime_utc '2024-12-26 22:28:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":501}' # _entry.id 7W3K # _exptl.entry_id 7W3K _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 36 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W3K _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 48-meric _pdbx_struct_assembly.oligomeric_count 48 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 36 YA N N ? 36 ZA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 236 A CYS 236 1_555 A SG CYS 270 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 KA SG CYS 633 U CYS 633 1_555 KA SG CYS 659 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 RA NE2 HIS 113 c HIS 113 1_555 AB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? metalc ? metalc2 RA NE2 HIS 115 c HIS 115 1_555 AB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc3 RA OD1 ASP 126 c ASP 126 1_555 AB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc4 RA OD2 ASP 126 c ASP 126 1_555 AB ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.743 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7W3K _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code WA 35 ADP A 1 501 501 ADP ADP . XA 35 ADP B 1 501 501 ADP ADP . YA 36 ATP E 1 501 501 ATP ATP . ZA 36 ATP F 1 501 501 ATP ATP . AB 37 ZN c 1 401 401 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . YA 36 248.404 243.11 243.384 1 212.63 ? PG ATP 501 E 1 HETATM 2 O O1G ATP . . . YA 36 247.828 244.131 242.465 1 212.63 ? O1G ATP 501 E 1 HETATM 3 O O2G ATP . . . YA 36 249.769 242.573 242.935 1 212.63 ? O2G ATP 501 E 1 HETATM 4 O O3G ATP . . . YA 36 247.461 241.934 243.659 1 212.63 ? O3G ATP 501 E 1 HETATM 5 P PB ATP . . . YA 36 248.443 243.422 246.35 1 212.63 ? PB ATP 501 E 1 HETATM 6 O O1B ATP . . . YA 36 249.563 242.664 246.932 1 212.63 ? O1B ATP 501 E 1 HETATM 7 O O2B ATP . . . YA 36 247.07 242.767 246.482 1 212.63 ? O2B ATP 501 E 1 HETATM 8 O O3B ATP . . . YA 36 248.679 243.746 244.818 1 212.63 ? O3B ATP 501 E 1 HETATM 9 P PA ATP . . . YA 36 248.29 245.502 248.43 1 212.63 ? PA ATP 501 E 1 HETATM 10 O O1A ATP . . . YA 36 249.515 245.173 249.184 1 212.63 ? O1A ATP 501 E 1 HETATM 11 O O2A ATP . . . YA 36 246.996 245.012 249.06 1 212.63 ? O2A ATP 501 E 1 HETATM 12 O O3A ATP . . . YA 36 248.337 244.88 246.978 1 212.63 ? O3A ATP 501 E 1 HETATM 13 O O5' ATP . . . YA 36 248.179 247.058 248.192 1 212.63 ? O5' ATP 501 E 1 HETATM 14 C C5' ATP . . . YA 36 249.276 247.941 248.507 1 212.63 ? C5' ATP 501 E 1 HETATM 15 C C4' ATP . . . YA 36 248.789 249.104 249.337 1 212.63 ? C4' ATP 501 E 1 HETATM 16 O O4' ATP . . . YA 36 247.606 248.724 250.077 1 212.63 ? O4' ATP 501 E 1 HETATM 17 C C3' ATP . . . YA 36 249.783 249.608 250.38 1 212.63 ? C3' ATP 501 E 1 HETATM 18 O O3' ATP . . . YA 36 249.643 251.01 250.585 1 212.63 ? O3' ATP 501 E 1 HETATM 19 C C2' ATP . . . YA 36 249.382 248.815 251.624 1 212.63 ? C2' ATP 501 E 1 HETATM 20 O O2' ATP . . . YA 36 249.752 249.497 252.817 1 212.63 ? O2' ATP 501 E 1 HETATM 21 C C1' ATP . . . YA 36 247.86 248.776 251.47 1 212.63 ? C1' ATP 501 E 1 HETATM 22 N N9 ATP . . . YA 36 247.207 247.626 252.09 1 212.63 ? N9 ATP 501 E 1 HETATM 23 C C8 ATP . . . YA 36 246.371 246.743 251.459 1 212.63 ? C8 ATP 501 E 1 HETATM 24 N N7 ATP . . . YA 36 245.908 245.793 252.234 1 212.63 ? N7 ATP 501 E 1 HETATM 25 C C5 ATP . . . YA 36 246.472 246.074 253.468 1 212.63 ? C5 ATP 501 E 1 HETATM 26 C C6 ATP . . . YA 36 246.376 245.44 254.722 1 212.63 ? C6 ATP 501 E 1 HETATM 27 N N6 ATP . . . YA 36 245.646 244.343 254.945 1 212.63 ? N6 ATP 501 E 1 HETATM 28 N N1 ATP . . . YA 36 247.066 245.976 255.753 1 212.63 ? N1 ATP 501 E 1 HETATM 29 C C2 ATP . . . YA 36 247.801 247.069 255.535 1 212.63 ? C2 ATP 501 E 1 HETATM 30 N N3 ATP . . . YA 36 247.964 247.754 254.401 1 212.63 ? N3 ATP 501 E 1 HETATM 31 C C4 ATP . . . YA 36 247.271 247.205 253.398 1 212.63 ? C4 ATP 501 E 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 451 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #