data_7W3Q # _model_server_result.job_id dUO1haPcxDaFh45ewgU7Rw _model_server_result.datetime_utc '2024-10-10 16:28:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7W3Q # _exptl.entry_id 7W3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 476.731 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,5R,6S,8R,9R,10R,12R,13R,14R,17S)-4,4,8,10,14-pentamethyl-17-[(2R)-6-methyl-2-oxidanyl-hept-5-en-2-yl]-2,3,5,6,7,9,11,12,13,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthrene-3,6,12-triol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W3Q _cell.length_a 61.782 _cell.length_b 61.782 _cell.length_c 156.217 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H52 O4' _chem_comp.formula_weight 476.731 _chem_comp.id 97I _chem_comp.mon_nstd_flag . _chem_comp.name (3S,5R,6S,8R,9R,10R,12R,13R,14R,17S)-4,4,8,10,14-pentamethyl-17-[(2R)-6-methyl-2-oxidanyl-hept-5-en-2-yl]-2,3,5,6,7,9,11,12,13,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthrene-3,6,12-triol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C15 97I sing 1 n n C18 C13 97I sing 2 n n C15 C6 97I sing 3 n n C20 C5 97I sing 4 n n C29 C24 97I sing 5 n n O4 C24 97I sing 6 n n C34 C32 97I sing 7 n n O2 C16 97I sing 8 n n C11 C16 97I sing 9 n n C11 C5 97I sing 10 n n C16 C10 97I sing 11 n n C13 C24 97I sing 12 n n C13 C9 97I sing 13 n n C24 C28 97I sing 14 n n C6 C5 97I sing 15 n n C6 C9 97I sing 16 n n C6 C21 97I sing 17 n n C5 C7 97I sing 18 n n C9 C14 97I sing 19 n n C32 C31 97I doub 20 n n C32 C33 97I sing 21 n n C27 C17 97I sing 22 n n C31 C30 97I sing 23 n n C22 C8 97I sing 24 n n C10 C17 97I sing 25 n n C10 C8 97I sing 26 n n C26 C17 97I sing 27 n n C28 C30 97I sing 28 n n C17 C23 97I sing 29 n n C7 C8 97I sing 30 n n C7 C12 97I sing 31 n n C8 C19 97I sing 32 n n C14 C12 97I sing 33 n n C14 O1 97I sing 34 n n C23 O3 97I sing 35 n n C23 C25 97I sing 36 n n C19 C25 97I sing 37 n n O1 H1 97I sing 38 n n O2 H2 97I sing 39 n n O3 H3 97I sing 40 n n O4 H4 97I sing 41 n n C7 H5 97I sing 42 n n C9 H6 97I sing 43 n n C10 H7 97I sing 44 n n C11 H8 97I sing 45 n n C11 H9 97I sing 46 n n C12 H10 97I sing 47 n n C12 H11 97I sing 48 n n C13 H12 97I sing 49 n n C14 H13 97I sing 50 n n C15 H14 97I sing 51 n n C15 H15 97I sing 52 n n C16 H16 97I sing 53 n n C18 H17 97I sing 54 n n C18 H18 97I sing 55 n n C19 H19 97I sing 56 n n C19 H20 97I sing 57 n n C20 H21 97I sing 58 n n C20 H22 97I sing 59 n n C20 H23 97I sing 60 n n C21 H24 97I sing 61 n n C21 H25 97I sing 62 n n C21 H26 97I sing 63 n n C22 H27 97I sing 64 n n C22 H28 97I sing 65 n n C22 H29 97I sing 66 n n C23 H30 97I sing 67 n n C25 H31 97I sing 68 n n C25 H32 97I sing 69 n n C26 H33 97I sing 70 n n C26 H34 97I sing 71 n n C26 H35 97I sing 72 n n C27 H36 97I sing 73 n n C27 H37 97I sing 74 n n C27 H38 97I sing 75 n n C28 H39 97I sing 76 n n C28 H40 97I sing 77 n n C29 H41 97I sing 78 n n C29 H42 97I sing 79 n n C29 H43 97I sing 80 n n C30 H44 97I sing 81 n n C30 H45 97I sing 82 n n C31 H46 97I sing 83 n n C33 H47 97I sing 84 n n C33 H48 97I sing 85 n n C33 H49 97I sing 86 n n C34 H50 97I sing 87 n n C34 H51 97I sing 88 n n C34 H52 97I sing 89 n n # _atom_sites.entry_id 7W3Q _atom_sites.fract_transf_matrix[1][1] 0.016186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 97I A 1 601 1 97I T3A . D 4 HOH A 1 701 34 HOH HOH . D 4 HOH A 2 702 57 HOH HOH . D 4 HOH A 3 703 51 HOH HOH . D 4 HOH A 4 704 113 HOH HOH . D 4 HOH A 5 705 42 HOH HOH . D 4 HOH A 6 706 20 HOH HOH . D 4 HOH A 7 707 9 HOH HOH . D 4 HOH A 8 708 23 HOH HOH . D 4 HOH A 9 709 19 HOH HOH . D 4 HOH A 10 710 35 HOH HOH . D 4 HOH A 11 711 30 HOH HOH . D 4 HOH A 12 712 48 HOH HOH . D 4 HOH A 13 713 21 HOH HOH . D 4 HOH A 14 714 74 HOH HOH . D 4 HOH A 15 715 16 HOH HOH . D 4 HOH A 16 716 43 HOH HOH . D 4 HOH A 17 717 78 HOH HOH . D 4 HOH A 18 718 8 HOH HOH . D 4 HOH A 19 719 55 HOH HOH . D 4 HOH A 20 720 18 HOH HOH . D 4 HOH A 21 721 1 HOH HOH . D 4 HOH A 22 722 14 HOH HOH . D 4 HOH A 23 723 71 HOH HOH . D 4 HOH A 24 724 69 HOH HOH . D 4 HOH A 25 725 34 HOH HOH . D 4 HOH A 26 726 10 HOH HOH . D 4 HOH A 27 727 9 HOH HOH . D 4 HOH A 28 728 68 HOH HOH . D 4 HOH A 29 729 74 HOH HOH . D 4 HOH A 30 730 116 HOH HOH . D 4 HOH A 31 731 50 HOH HOH . D 4 HOH A 32 732 31 HOH HOH . D 4 HOH A 33 733 58 HOH HOH . D 4 HOH A 34 734 91 HOH HOH . D 4 HOH A 35 735 15 HOH HOH . D 4 HOH A 36 736 29 HOH HOH . D 4 HOH A 37 737 12 HOH HOH . D 4 HOH A 38 738 6 HOH HOH . D 4 HOH A 39 739 16 HOH HOH . D 4 HOH A 40 740 18 HOH HOH . D 4 HOH A 41 741 3 HOH HOH . D 4 HOH A 42 742 26 HOH HOH . D 4 HOH A 43 743 4 HOH HOH . D 4 HOH A 44 744 90 HOH HOH . D 4 HOH A 45 745 81 HOH HOH . D 4 HOH A 46 746 13 HOH HOH . D 4 HOH A 47 747 65 HOH HOH . D 4 HOH A 48 748 53 HOH HOH . D 4 HOH A 49 749 67 HOH HOH . D 4 HOH A 50 750 64 HOH HOH . D 4 HOH A 51 751 33 HOH HOH . D 4 HOH A 52 752 2 HOH HOH . D 4 HOH A 53 753 126 HOH HOH . D 4 HOH A 54 754 17 HOH HOH . D 4 HOH A 55 755 32 HOH HOH . D 4 HOH A 56 756 54 HOH HOH . D 4 HOH A 57 757 124 HOH HOH . E 4 HOH C 1 701 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 97I . . . C 3 23.106 -9.418 -13.23 1 49.91 ? O1 97I 601 A 1 HETATM 2 O O2 97I . . . C 3 27.565 -3.833 -16.057 1 90.73 ? O2 97I 601 A 1 HETATM 3 O O3 97I . . . C 3 25.38 -0.719 -12.169 1 63.01 ? O3 97I 601 A 1 HETATM 4 O O4 97I . . . C 3 22.606 -11.172 -16.093 1 62.54 ? O4 97I 601 A 1 HETATM 5 C C5 97I . . . C 3 25.441 -6.729 -15.441 1 50.75 ? C5 97I 601 A 1 HETATM 6 C C6 97I . . . C 3 25.777 -8.198 -15.46 1 55.47 ? C6 97I 601 A 1 HETATM 7 C C7 97I . . . C 3 24.974 -6.18 -13.947 1 49.46 ? C7 97I 601 A 1 HETATM 8 C C8 97I . . . C 3 24.753 -4.693 -13.783 1 48.76 ? C8 97I 601 A 1 HETATM 9 C C9 97I . . . C 3 24.615 -9.069 -14.959 1 51.08 ? C9 97I 601 A 1 HETATM 10 C C10 97I . . . C 3 26.052 -3.876 -14.259 1 50.14 ? C10 97I 601 A 1 HETATM 11 C C11 97I . . . C 3 26.657 -5.9 -15.833 1 58.82 ? C11 97I 601 A 1 HETATM 12 C C12 97I . . . C 3 23.8 -7.123 -13.586 1 48.07 ? C12 97I 601 A 1 HETATM 13 C C13 97I . . . C 3 24.916 -10.571 -15.58 1 53.96 ? C13 97I 601 A 1 HETATM 14 C C14 97I . . . C 3 24.232 -8.719 -13.586 1 49.43 ? C14 97I 601 A 1 HETATM 15 C C15 97I . . . C 3 26.137 -8.797 -16.936 1 59.51 ? C15 97I 601 A 1 HETATM 16 C C16 97I . . . C 3 26.388 -4.339 -15.723 1 57.42 ? C16 97I 601 A 1 HETATM 17 C C17 97I . . . C 3 25.978 -2.341 -13.967 1 51.89 ? C17 97I 601 A 1 HETATM 18 C C18 97I . . . C 3 25.064 -10.105 -17.04 1 61.77 ? C18 97I 601 A 1 HETATM 19 C C19 97I . . . C 3 24.526 -4.36 -12.293 1 55.38 ? C19 97I 601 A 1 HETATM 20 C C20 97I . . . C 3 24.327 -6.434 -16.505 1 52.63 ? C20 97I 601 A 1 HETATM 21 C C21 97I . . . C 3 27.025 -8.574 -14.576 1 52.74 ? C21 97I 601 A 1 HETATM 22 C C22 97I . . . C 3 23.495 -4.159 -14.485 1 47.09 ? C22 97I 601 A 1 HETATM 23 C C23 97I . . . C 3 25.696 -2.068 -12.422 1 59.77 ? C23 97I 601 A 1 HETATM 24 C C24 97I . . . C 3 23.864 -11.546 -15.506 1 57.37 ? C24 97I 601 A 1 HETATM 25 C C25 97I . . . C 3 24.546 -2.905 -11.899 1 59.63 ? C25 97I 601 A 1 HETATM 26 C C26 97I . . . C 3 27.357 -1.704 -14.24 1 53.54 ? C26 97I 601 A 1 HETATM 27 C C27 97I . . . C 3 24.98 -1.512 -14.776 1 53.07 ? C27 97I 601 A 1 HETATM 28 C C28 97I . . . C 3 23.707 -11.977 -14.011 1 57.65 ? C28 97I 601 A 1 HETATM 29 C C29 97I . . . C 3 24.363 -12.777 -16.37 1 57.95 ? C29 97I 601 A 1 HETATM 30 C C30 97I . . . C 3 22.382 -12.553 -13.513 1 71.64 ? C30 97I 601 A 1 HETATM 31 C C31 97I . . . C 3 21.902 -13.453 -14.604 1 84.38 ? C31 97I 601 A 1 HETATM 32 C C32 97I . . . C 3 22.507 -14.579 -14.905 1 95.87 ? C32 97I 601 A 1 HETATM 33 C C33 97I . . . C 3 23.713 -15.142 -14.144 1 96.52 ? C33 97I 601 A 1 HETATM 34 C C34 97I . . . C 3 21.945 -15.363 -16.091 1 114.07 ? C34 97I 601 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 34 #