data_7W47 # _model_server_result.job_id 8okzfE1WPa1O6_REz3oFJQ _model_server_result.datetime_utc '2024-11-15 02:52:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1105}' # _entry.id 7W47 # _exptl.entry_id 7W47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 387.38 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Tegoprazan _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7W47 _cell.length_a 104.99 _cell.length_b 104.99 _cell.length_c 367.79 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 131 B CYS 131 1_555 B SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 162 B CYS 162 1_555 B SG CYS 178 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 B SG CYS 201 B CYS 201 1_555 B SG CYS 262 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 A C SER 385 A SER 384 1_555 A N BFD 386 A BFD 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C BFD 386 A BFD 385 1_555 A N LYS 387 A LYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B ND2 ASN 99 B ASN 99 1_555 H C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 B ND2 ASN 130 B ASN 130 1_555 I C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale5 B ND2 ASN 161 B ASN 161 1_555 J C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? metalc ? metalc1 A O ASP 184 A ASP 183 1_555 F RB RB . A RB 1104 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc2 A O ALA 340 A ALA 339 1_555 D RB RB . A RB 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc3 A O VAL 342 A VAL 341 1_555 D RB RB . A RB 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? metalc ? metalc4 A OE2 GLU 344 A GLU 343 1_555 D RB RB . A RB 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc5 A OD1 BFD 386 A BFD 385 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc6 A OD2 BFD 386 A BFD 385 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc7 A O THR 388 A THR 387 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc8 A O SER 409 A SER 408 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc9 A O THR 420 A THR 419 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc10 A OD1 ASP 727 A ASP 726 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc11 A O LEU 735 A LEU 734 1_555 E RB RB . A RB 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? metalc ? metalc12 A O LYS 736 A LYS 735 1_555 E RB RB . A RB 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc13 A O ALA 738 A ALA 737 1_555 E RB RB . A RB 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc14 A OD1 ASP 757 A ASP 756 1_555 E RB RB . A RB 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc15 A OE1 GLU 821 A GLU 820 1_555 D RB RB . A RB 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc16 E RB RB . A RB 1103 1_555 K O HOH . A HOH 1248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.174 ? # _chem_comp.formula 'C20 H19 F2 N3 O3' _chem_comp.formula_weight 387.38 _chem_comp.id 8BN _chem_comp.mon_nstd_flag . _chem_comp.name Tegoprazan _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C36 N03 8BN sing 1 n n C35 N03 8BN sing 2 n n N03 C08 8BN sing 3 n n C08 O02 8BN doub 4 n n C08 C03 8BN sing 5 n n C03 C04 8BN doub 6 n y C03 C02 8BN sing 7 n y C04 C05 8BN sing 8 n y C02 C01 8BN doub 9 n y F01 C13 8BN sing 10 n n C09 C15 8BN sing 11 n n C09 O04 8BN sing 12 n n C09 C11 8BN sing 13 n n C15 C14 8BN sing 14 n n C05 O04 8BN sing 15 n n C05 C06 8BN doub 16 n y C01 C06 8BN sing 17 n y C01 N01 8BN sing 18 n y C13 C11 8BN doub 19 n y C13 C17 8BN sing 20 n y C11 C12 8BN sing 21 n y C06 N02 8BN sing 22 n y N01 C10 8BN sing 23 n y C17 C18 8BN doub 24 n y C14 O03 8BN sing 25 n n N02 C10 8BN doub 26 n y C12 O03 8BN sing 27 n n C12 C16 8BN doub 28 n y C10 C07 8BN sing 29 n n C18 C16 8BN sing 30 n y C18 F02 8BN sing 31 n n C15 H1 8BN sing 32 n n C15 H2 8BN sing 33 n n C02 H3 8BN sing 34 n n C04 H4 8BN sing 35 n n C07 H5 8BN sing 36 n n C07 H6 8BN sing 37 n n C07 H7 8BN sing 38 n n C09 H8 8BN sing 39 n n C14 H9 8BN sing 40 n n C14 H10 8BN sing 41 n n C16 H11 8BN sing 42 n n C17 H12 8BN sing 43 n n C35 H13 8BN sing 44 n n C35 H14 8BN sing 45 n n C35 H15 8BN sing 46 n n C36 H16 8BN sing 47 n n C36 H17 8BN sing 48 n n C36 H18 8BN sing 49 n n N01 H19 8BN sing 50 n n # _atom_sites.entry_id 7W47 _atom_sites.fract_transf_matrix[1][1] 0.009525 _atom_sites.fract_transf_matrix[1][2] 0.005499 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1101 1102 MG MG . D 4 RB A 1 1102 1104 RB RB . E 4 RB A 1 1103 1105 RB RB . F 4 RB A 1 1104 1106 RB RB . G 5 8BN A 1 1105 1201 8BN TGM . H 6 NAG B 1 301 301 NAG NAG . I 6 NAG B 1 302 302 NAG NAG . J 6 NAG B 1 303 303 NAG NAG . K 7 HOH A 1 1201 88 HOH HOH . K 7 HOH A 2 1202 1 HOH HOH . K 7 HOH A 3 1203 17 HOH HOH . K 7 HOH A 4 1204 32 HOH HOH . K 7 HOH A 5 1205 10 HOH HOH . K 7 HOH A 6 1206 87 HOH HOH . K 7 HOH A 7 1207 92 HOH HOH . K 7 HOH A 8 1208 45 HOH HOH . K 7 HOH A 9 1209 68 HOH HOH . K 7 HOH A 10 1210 72 HOH HOH . K 7 HOH A 11 1211 9 HOH HOH . K 7 HOH A 12 1212 21 HOH HOH . K 7 HOH A 13 1213 40 HOH HOH . K 7 HOH A 14 1214 13 HOH HOH . K 7 HOH A 15 1215 38 HOH HOH . K 7 HOH A 16 1216 30 HOH HOH . K 7 HOH A 17 1217 15 HOH HOH . K 7 HOH A 18 1218 49 HOH HOH . K 7 HOH A 19 1219 19 HOH HOH . K 7 HOH A 20 1220 79 HOH HOH . K 7 HOH A 21 1221 74 HOH HOH . K 7 HOH A 22 1222 48 HOH HOH . K 7 HOH A 23 1223 66 HOH HOH . K 7 HOH A 24 1224 11 HOH HOH . K 7 HOH A 25 1225 93 HOH HOH . K 7 HOH A 26 1226 34 HOH HOH . K 7 HOH A 27 1227 76 HOH HOH . K 7 HOH A 28 1228 82 HOH HOH . K 7 HOH A 29 1229 42 HOH HOH . K 7 HOH A 30 1230 35 HOH HOH . K 7 HOH A 31 1231 31 HOH HOH . K 7 HOH A 32 1232 44 HOH HOH . K 7 HOH A 33 1233 67 HOH HOH . K 7 HOH A 34 1234 23 HOH HOH . K 7 HOH A 35 1235 85 HOH HOH . K 7 HOH A 36 1236 81 HOH HOH . K 7 HOH A 37 1237 47 HOH HOH . K 7 HOH A 38 1238 90 HOH HOH . K 7 HOH A 39 1239 62 HOH HOH . K 7 HOH A 40 1240 24 HOH HOH . K 7 HOH A 41 1241 64 HOH HOH . K 7 HOH A 42 1242 75 HOH HOH . K 7 HOH A 43 1243 78 HOH HOH . K 7 HOH A 44 1244 36 HOH HOH . K 7 HOH A 45 1245 2 HOH HOH . K 7 HOH A 46 1246 80 HOH HOH . K 7 HOH A 47 1247 91 HOH HOH . K 7 HOH A 48 1248 71 HOH HOH . K 7 HOH A 49 1249 53 HOH HOH . K 7 HOH A 50 1250 56 HOH HOH . K 7 HOH A 51 1251 37 HOH HOH . K 7 HOH A 52 1252 5 HOH HOH . K 7 HOH A 53 1253 94 HOH HOH . K 7 HOH A 54 1254 58 HOH HOH . K 7 HOH A 55 1255 33 HOH HOH . K 7 HOH A 56 1256 70 HOH HOH . K 7 HOH A 57 1257 54 HOH HOH . K 7 HOH A 58 1258 73 HOH HOH . K 7 HOH A 59 1259 65 HOH HOH . K 7 HOH A 60 1260 60 HOH HOH . K 7 HOH A 61 1261 61 HOH HOH . K 7 HOH A 62 1262 63 HOH HOH . K 7 HOH A 63 1263 59 HOH HOH . L 7 HOH B 1 401 26 HOH HOH . L 7 HOH B 2 402 16 HOH HOH . L 7 HOH B 3 403 69 HOH HOH . L 7 HOH B 4 404 14 HOH HOH . L 7 HOH B 5 405 7 HOH HOH . L 7 HOH B 6 406 89 HOH HOH . L 7 HOH B 7 407 86 HOH HOH . L 7 HOH B 8 408 55 HOH HOH . L 7 HOH B 9 409 6 HOH HOH . L 7 HOH B 10 410 3 HOH HOH . L 7 HOH B 11 411 77 HOH HOH . L 7 HOH B 12 412 52 HOH HOH . L 7 HOH B 13 413 57 HOH HOH . L 7 HOH B 14 414 18 HOH HOH . L 7 HOH B 15 415 27 HOH HOH . L 7 HOH B 16 416 84 HOH HOH . L 7 HOH B 17 417 83 HOH HOH . L 7 HOH B 18 418 12 HOH HOH . L 7 HOH B 19 419 22 HOH HOH . L 7 HOH B 20 420 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 8BN . . . G 5 39.875 -41.583 -66.662 1 55.7 ? C10 8BN 1105 A 1 HETATM 2 C C13 8BN . . . G 5 46.34 -40.473 -68.325 1 54.81 ? C13 8BN 1105 A 1 HETATM 3 C C15 8BN . . . G 5 44.264 -37.252 -68.772 1 40.29 ? C15 8BN 1105 A 1 HETATM 4 C C02 8BN . . . G 5 39.28 -39.712 -69.654 1 38.24 ? C02 8BN 1105 A 1 HETATM 5 C C04 8BN . . . G 5 41.561 -38.893 -69.894 1 67.08 ? C04 8BN 1105 A 1 HETATM 6 C C05 8BN . . . G 5 42.009 -39.534 -68.748 1 68.12 ? C05 8BN 1105 A 1 HETATM 7 C C06 8BN . . . G 5 41.022 -40.326 -68.005 1 62.34 ? C06 8BN 1105 A 1 HETATM 8 C C07 8BN . . . G 5 39.585 -42.471 -65.477 1 35.99 ? C07 8BN 1105 A 1 HETATM 9 C C09 8BN . . . G 5 44.402 -38.785 -68.849 1 48.77 ? C09 8BN 1105 A 1 HETATM 10 C C11 8BN . . . G 5 45.538 -39.245 -68.03 1 46.67 ? C11 8BN 1105 A 1 HETATM 11 C C12 8BN . . . G 5 45.857 -38.456 -66.825 1 41.22 ? C12 8BN 1105 A 1 HETATM 12 C C14 8BN . . . G 5 44.157 -36.696 -67.357 1 31.09 ? C14 8BN 1105 A 1 HETATM 13 C C16 8BN . . . G 5 46.921 -38.902 -66.042 1 40.51 ? C16 8BN 1105 A 1 HETATM 14 O O03 8BN . . . G 5 45.125 -37.315 -66.5 1 43.51 ? O03 8BN 1105 A 1 HETATM 15 C C01 8BN . . . G 5 39.636 -40.396 -68.495 1 51.72 ? C01 8BN 1105 A 1 HETATM 16 C C03 8BN . . . G 5 40.243 -38.988 -70.346 1 44.88 ? C03 8BN 1105 A 1 HETATM 17 C C08 8BN . . . G 5 39.883 -38.225 -71.585 1 42.64 ? C08 8BN 1105 A 1 HETATM 18 C C17 8BN . . . G 5 47.372 -40.807 -67.477 1 43.37 ? C17 8BN 1105 A 1 HETATM 19 C C18 8BN . . . G 5 47.646 -40.053 -66.351 1 42.71 ? C18 8BN 1105 A 1 HETATM 20 C C35 8BN . . . G 5 41.04 -39.885 -72.94 1 39.71 ? C35 8BN 1105 A 1 HETATM 21 C C36 8BN . . . G 5 39.867 -37.862 -73.914 1 25.47 ? C36 8BN 1105 A 1 HETATM 22 F F01 8BN . . . G 5 46.129 -41.276 -69.388 1 78.64 ? F01 8BN 1105 A 1 HETATM 23 F F02 8BN . . . G 5 48.655 -40.454 -65.556 1 42.98 ? F02 8BN 1105 A 1 HETATM 24 N N01 8BN . . . G 5 38.997 -41.192 -67.623 1 47.77 ? N01 8BN 1105 A 1 HETATM 25 N N02 8BN . . . G 5 41.101 -41.059 -66.888 1 71.52 ? N02 8BN 1105 A 1 HETATM 26 N N03 8BN . . . G 5 40.263 -38.661 -72.756 1 38.74 ? N03 8BN 1105 A 1 HETATM 27 O O02 8BN . . . G 5 39.241 -37.178 -71.522 1 42.02 ? O02 8BN 1105 A 1 HETATM 28 O O04 8BN . . . G 5 43.294 -39.473 -68.258 1 59.46 ? O04 8BN 1105 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #