data_7W47 # _model_server_result.job_id Nd6KLYrpES7h1qL8yjRB_g _model_server_result.datetime_utc '2024-11-15 02:57:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":302}' # _entry.id 7W47 # _exptl.entry_id 7W47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7W47 _cell.length_a 104.99 _cell.length_b 104.99 _cell.length_c 367.79 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 131 B CYS 131 1_555 B SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 162 B CYS 162 1_555 B SG CYS 178 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 B SG CYS 201 B CYS 201 1_555 B SG CYS 262 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 A C SER 385 A SER 384 1_555 A N BFD 386 A BFD 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C BFD 386 A BFD 385 1_555 A N LYS 387 A LYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B ND2 ASN 99 B ASN 99 1_555 H C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 B ND2 ASN 130 B ASN 130 1_555 I C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale5 B ND2 ASN 161 B ASN 161 1_555 J C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? metalc ? metalc1 A O ASP 184 A ASP 183 1_555 F RB RB . A RB 1104 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc2 A O ALA 340 A ALA 339 1_555 D RB RB . A RB 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc3 A O VAL 342 A VAL 341 1_555 D RB RB . A RB 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? metalc ? metalc4 A OE2 GLU 344 A GLU 343 1_555 D RB RB . A RB 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc5 A OD1 BFD 386 A BFD 385 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc6 A OD2 BFD 386 A BFD 385 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc7 A O THR 388 A THR 387 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc8 A O SER 409 A SER 408 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc9 A O THR 420 A THR 419 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc10 A OD1 ASP 727 A ASP 726 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc11 A O LEU 735 A LEU 734 1_555 E RB RB . A RB 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? metalc ? metalc12 A O LYS 736 A LYS 735 1_555 E RB RB . A RB 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc13 A O ALA 738 A ALA 737 1_555 E RB RB . A RB 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc14 A OD1 ASP 757 A ASP 756 1_555 E RB RB . A RB 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc15 A OE1 GLU 821 A GLU 820 1_555 D RB RB . A RB 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc16 E RB RB . A RB 1103 1_555 K O HOH . A HOH 1248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.174 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 305 n n C1 O1 NAG sing 306 n n C1 O5 NAG sing 307 n n C1 H1 NAG sing 308 n n C2 C3 NAG sing 309 n n C2 N2 NAG sing 310 n n C2 H2 NAG sing 311 n n C3 C4 NAG sing 312 n n C3 O3 NAG sing 313 n n C3 H3 NAG sing 314 n n C4 C5 NAG sing 315 n n C4 O4 NAG sing 316 n n C4 H4 NAG sing 317 n n C5 C6 NAG sing 318 n n C5 O5 NAG sing 319 n n C5 H5 NAG sing 320 n n C6 O6 NAG sing 321 n n C6 H61 NAG sing 322 n n C6 H62 NAG sing 323 n n C7 C8 NAG sing 324 n n C7 N2 NAG sing 325 n n C7 O7 NAG doub 326 n n C8 H81 NAG sing 327 n n C8 H82 NAG sing 328 n n C8 H83 NAG sing 329 n n N2 HN2 NAG sing 330 n n O1 HO1 NAG sing 331 n n O3 HO3 NAG sing 332 n n O4 HO4 NAG sing 333 n n O6 HO6 NAG sing 334 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7W47 _atom_sites.fract_transf_matrix[1][1] 0.009525 _atom_sites.fract_transf_matrix[1][2] 0.005499 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1101 1102 MG MG . D 4 RB A 1 1102 1104 RB RB . E 4 RB A 1 1103 1105 RB RB . F 4 RB A 1 1104 1106 RB RB . G 5 8BN A 1 1105 1201 8BN TGM . H 6 NAG B 1 301 301 NAG NAG . I 6 NAG B 1 302 302 NAG NAG . J 6 NAG B 1 303 303 NAG NAG . K 7 HOH A 1 1201 88 HOH HOH . K 7 HOH A 2 1202 1 HOH HOH . K 7 HOH A 3 1203 17 HOH HOH . K 7 HOH A 4 1204 32 HOH HOH . K 7 HOH A 5 1205 10 HOH HOH . K 7 HOH A 6 1206 87 HOH HOH . K 7 HOH A 7 1207 92 HOH HOH . K 7 HOH A 8 1208 45 HOH HOH . K 7 HOH A 9 1209 68 HOH HOH . K 7 HOH A 10 1210 72 HOH HOH . K 7 HOH A 11 1211 9 HOH HOH . K 7 HOH A 12 1212 21 HOH HOH . K 7 HOH A 13 1213 40 HOH HOH . K 7 HOH A 14 1214 13 HOH HOH . K 7 HOH A 15 1215 38 HOH HOH . K 7 HOH A 16 1216 30 HOH HOH . K 7 HOH A 17 1217 15 HOH HOH . K 7 HOH A 18 1218 49 HOH HOH . K 7 HOH A 19 1219 19 HOH HOH . K 7 HOH A 20 1220 79 HOH HOH . K 7 HOH A 21 1221 74 HOH HOH . K 7 HOH A 22 1222 48 HOH HOH . K 7 HOH A 23 1223 66 HOH HOH . K 7 HOH A 24 1224 11 HOH HOH . K 7 HOH A 25 1225 93 HOH HOH . K 7 HOH A 26 1226 34 HOH HOH . K 7 HOH A 27 1227 76 HOH HOH . K 7 HOH A 28 1228 82 HOH HOH . K 7 HOH A 29 1229 42 HOH HOH . K 7 HOH A 30 1230 35 HOH HOH . K 7 HOH A 31 1231 31 HOH HOH . K 7 HOH A 32 1232 44 HOH HOH . K 7 HOH A 33 1233 67 HOH HOH . K 7 HOH A 34 1234 23 HOH HOH . K 7 HOH A 35 1235 85 HOH HOH . K 7 HOH A 36 1236 81 HOH HOH . K 7 HOH A 37 1237 47 HOH HOH . K 7 HOH A 38 1238 90 HOH HOH . K 7 HOH A 39 1239 62 HOH HOH . K 7 HOH A 40 1240 24 HOH HOH . K 7 HOH A 41 1241 64 HOH HOH . K 7 HOH A 42 1242 75 HOH HOH . K 7 HOH A 43 1243 78 HOH HOH . K 7 HOH A 44 1244 36 HOH HOH . K 7 HOH A 45 1245 2 HOH HOH . K 7 HOH A 46 1246 80 HOH HOH . K 7 HOH A 47 1247 91 HOH HOH . K 7 HOH A 48 1248 71 HOH HOH . K 7 HOH A 49 1249 53 HOH HOH . K 7 HOH A 50 1250 56 HOH HOH . K 7 HOH A 51 1251 37 HOH HOH . K 7 HOH A 52 1252 5 HOH HOH . K 7 HOH A 53 1253 94 HOH HOH . K 7 HOH A 54 1254 58 HOH HOH . K 7 HOH A 55 1255 33 HOH HOH . K 7 HOH A 56 1256 70 HOH HOH . K 7 HOH A 57 1257 54 HOH HOH . K 7 HOH A 58 1258 73 HOH HOH . K 7 HOH A 59 1259 65 HOH HOH . K 7 HOH A 60 1260 60 HOH HOH . K 7 HOH A 61 1261 61 HOH HOH . K 7 HOH A 62 1262 63 HOH HOH . K 7 HOH A 63 1263 59 HOH HOH . L 7 HOH B 1 401 26 HOH HOH . L 7 HOH B 2 402 16 HOH HOH . L 7 HOH B 3 403 69 HOH HOH . L 7 HOH B 4 404 14 HOH HOH . L 7 HOH B 5 405 7 HOH HOH . L 7 HOH B 6 406 89 HOH HOH . L 7 HOH B 7 407 86 HOH HOH . L 7 HOH B 8 408 55 HOH HOH . L 7 HOH B 9 409 6 HOH HOH . L 7 HOH B 10 410 3 HOH HOH . L 7 HOH B 11 411 77 HOH HOH . L 7 HOH B 12 412 52 HOH HOH . L 7 HOH B 13 413 57 HOH HOH . L 7 HOH B 14 414 18 HOH HOH . L 7 HOH B 15 415 27 HOH HOH . L 7 HOH B 16 416 84 HOH HOH . L 7 HOH B 17 417 83 HOH HOH . L 7 HOH B 18 418 12 HOH HOH . L 7 HOH B 19 419 22 HOH HOH . L 7 HOH B 20 420 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 6 20.763 -47.496 -119.207 1 116.53 ? C1 NAG 302 B 1 HETATM 2 C C2 NAG . . . I 6 21.232 -48.932 -119.379 1 120.78 ? C2 NAG 302 B 1 HETATM 3 C C3 NAG . . . I 6 21.393 -49.225 -120.871 1 129.66 ? C3 NAG 302 B 1 HETATM 4 C C4 NAG . . . I 6 20.113 -48.888 -121.639 1 132.13 ? C4 NAG 302 B 1 HETATM 5 C C5 NAG . . . I 6 19.549 -47.506 -121.265 1 127.34 ? C5 NAG 302 B 1 HETATM 6 C C6 NAG . . . I 6 18.152 -47.253 -121.801 1 126.79 ? C6 NAG 302 B 1 HETATM 7 C C7 NAG . . . I 6 22.864 -50.402 -118.285 1 111.88 ? C7 NAG 302 B 1 HETATM 8 C C8 NAG . . . I 6 24.184 -50.479 -117.579 1 110.87 ? C8 NAG 302 B 1 HETATM 9 N N2 NAG . . . I 6 22.478 -49.181 -118.672 1 113.73 ? N2 NAG 302 B 1 HETATM 10 O O3 NAG . . . I 6 21.75 -50.59 -121.063 1 131.26 ? O3 NAG 302 B 1 HETATM 11 O O4 NAG . . . I 6 20.388 -48.908 -123.037 1 131.89 ? O4 NAG 302 B 1 HETATM 12 O O5 NAG . . . I 6 19.482 -47.333 -119.837 1 122.77 ? O5 NAG 302 B 1 HETATM 13 O O6 NAG . . . I 6 17.479 -48.444 -122.194 1 124.6 ? O6 NAG 302 B 1 HETATM 14 O O7 NAG . . . I 6 22.179 -51.401 -118.499 1 111.54 ? O7 NAG 302 B 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #