data_7W48 # _model_server_result.job_id '_jkgxYzCAbR1dR6_4ivmzg' _model_server_result.datetime_utc '2024-11-27 17:07:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1106}' # _entry.id 7W48 # _exptl.entry_id 7W48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.755 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'O-DODECANYL OCTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7W48 _cell.length_a 104.75 _cell.length_b 104.75 _cell.length_c 368.79 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 131 B CYS 131 1_555 B SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 162 B CYS 162 1_555 B SG CYS 178 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 B SG CYS 201 B CYS 201 1_555 B SG CYS 262 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A C SER 385 A SER 384 1_555 A N BFD 386 A BFD 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C BFD 386 A BFD 385 1_555 A N LYS 387 A LYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B ND2 ASN 99 B ASN 99 1_555 J C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 B ND2 ASN 130 B ASN 130 1_555 K C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 B ND2 ASN 161 B ASN 161 1_555 L C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A O ASP 184 A ASP 183 1_555 G RB RB . A RB 1105 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc2 A OD2 ASP 186 A ASP 185 1_555 G RB RB . A RB 1105 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc3 A O SER 226 A SER 225 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc4 A O THR 388 A THR 387 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc5 A O SER 409 A SER 408 1_555 G RB RB . A RB 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc6 A OD1 ASP 727 A ASP 726 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc7 A OD2 ASP 727 A ASP 726 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc8 A O LYS 736 A LYS 735 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc9 A O ALA 738 A ALA 737 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc10 A OD1 ASP 757 A ASP 756 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc11 A OD2 ASP 757 A ASP 756 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.09 ? # _chem_comp.formula 'C28 H58 O9' _chem_comp.formula_weight 538.755 _chem_comp.id CE1 _chem_comp.mon_nstd_flag . _chem_comp.name 'O-DODECANYL OCTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms THESIT # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CE1 sing 146 n n C1 H11 CE1 sing 147 n n C1 H12 CE1 sing 148 n n C1 H13 CE1 sing 149 n n C2 C3 CE1 sing 150 n n C2 H21 CE1 sing 151 n n C2 H22 CE1 sing 152 n n C3 C4 CE1 sing 153 n n C3 H31 CE1 sing 154 n n C3 H32 CE1 sing 155 n n C4 C5 CE1 sing 156 n n C4 H41 CE1 sing 157 n n C4 H42 CE1 sing 158 n n C5 C6 CE1 sing 159 n n C5 H51 CE1 sing 160 n n C5 H52 CE1 sing 161 n n C6 C7 CE1 sing 162 n n C6 H61 CE1 sing 163 n n C6 H62 CE1 sing 164 n n C7 C8 CE1 sing 165 n n C7 H71 CE1 sing 166 n n C7 H72 CE1 sing 167 n n C8 C9 CE1 sing 168 n n C8 H81 CE1 sing 169 n n C8 H82 CE1 sing 170 n n C9 C10 CE1 sing 171 n n C9 H91 CE1 sing 172 n n C9 H92 CE1 sing 173 n n C10 C11 CE1 sing 174 n n C10 H101 CE1 sing 175 n n C10 H102 CE1 sing 176 n n C11 C12 CE1 sing 177 n n C11 H111 CE1 sing 178 n n C11 H112 CE1 sing 179 n n C12 O13 CE1 sing 180 n n C12 H121 CE1 sing 181 n n C12 H122 CE1 sing 182 n n O13 C14 CE1 sing 183 n n C14 C15 CE1 sing 184 n n C14 H141 CE1 sing 185 n n C14 H142 CE1 sing 186 n n C15 O16 CE1 sing 187 n n C15 H151 CE1 sing 188 n n C15 H152 CE1 sing 189 n n O16 C17 CE1 sing 190 n n C17 C18 CE1 sing 191 n n C17 H171 CE1 sing 192 n n C17 H172 CE1 sing 193 n n C18 O19 CE1 sing 194 n n C18 H181 CE1 sing 195 n n C18 H182 CE1 sing 196 n n O19 C20 CE1 sing 197 n n C20 C21 CE1 sing 198 n n C20 H201 CE1 sing 199 n n C20 H202 CE1 sing 200 n n C21 O22 CE1 sing 201 n n C21 H211 CE1 sing 202 n n C21 H212 CE1 sing 203 n n O22 C23 CE1 sing 204 n n C23 C24 CE1 sing 205 n n C23 H231 CE1 sing 206 n n C23 H232 CE1 sing 207 n n C24 O25 CE1 sing 208 n n C24 H241 CE1 sing 209 n n C24 H242 CE1 sing 210 n n O25 C26 CE1 sing 211 n n C26 C27 CE1 sing 212 n n C26 H261 CE1 sing 213 n n C26 H262 CE1 sing 214 n n C27 O28 CE1 sing 215 n n C27 H271 CE1 sing 216 n n C27 H272 CE1 sing 217 n n O28 C29 CE1 sing 218 n n C29 C30 CE1 sing 219 n n C29 H291 CE1 sing 220 n n C29 H292 CE1 sing 221 n n C30 O31 CE1 sing 222 n n C30 H301 CE1 sing 223 n n C30 H302 CE1 sing 224 n n O31 C32 CE1 sing 225 n n C32 C33 CE1 sing 226 n n C32 H321 CE1 sing 227 n n C32 H322 CE1 sing 228 n n C33 O34 CE1 sing 229 n n C33 H331 CE1 sing 230 n n C33 H332 CE1 sing 231 n n O34 C35 CE1 sing 232 n n C35 C36 CE1 sing 233 n n C35 H351 CE1 sing 234 n n C35 H352 CE1 sing 235 n n C36 O37 CE1 sing 236 n n C36 H361 CE1 sing 237 n n C36 H362 CE1 sing 238 n n O37 H37 CE1 sing 239 n n # _atom_sites.entry_id 7W48 _atom_sites.fract_transf_matrix[1][1] 0.009547 _atom_sites.fract_transf_matrix[1][2] 0.005512 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011023 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1101 1102 MG MG . D 4 CE1 A 1 1102 1103 CE1 CE1 . E 5 RB A 1 1103 1104 RB RB . F 5 RB A 1 1104 1105 RB RB . G 5 RB A 1 1105 1106 RB RB . H 4 CE1 A 1 1106 305 CE1 CE1 . I 6 8BZ A 1 1107 1 8BZ XD1 . J 7 NAG B 1 301 301 NAG NAG . K 7 NAG B 1 302 302 NAG NAG . L 7 NAG B 1 303 303 NAG NAG . M 8 PCW B 1 304 304 PCW PCW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CE1 . . . H 4 -15.957 50.814 -71.847 1 86.23 ? C1 CE1 1106 A 1 HETATM 2 C C2 CE1 . . . H 4 -17.061 50.417 -72.803 1 87.48 ? C2 CE1 1106 A 1 HETATM 3 C C3 CE1 . . . H 4 -16.709 49.117 -73.518 1 92.06 ? C3 CE1 1106 A 1 HETATM 4 C C4 CE1 . . . H 4 -15.423 49.273 -74.322 1 88.59 ? C4 CE1 1106 A 1 HETATM 5 C C5 CE1 . . . H 4 -14.53 48.043 -74.201 1 99.75 ? C5 CE1 1106 A 1 HETATM 6 C C6 CE1 . . . H 4 -15.132 46.833 -74.906 1 111.78 ? C6 CE1 1106 A 1 HETATM 7 C C7 CE1 . . . H 4 -14.275 45.586 -74.71 1 103.45 ? C7 CE1 1106 A 1 HETATM 8 C C8 CE1 . . . H 4 -13.426 45.302 -75.944 1 95.59 ? C8 CE1 1106 A 1 HETATM 9 C C9 CE1 . . . H 4 -12.869 43.885 -75.9 1 103.9 ? C9 CE1 1106 A 1 HETATM 10 C C10 CE1 . . . H 4 -11.717 43.709 -76.881 1 113.37 ? C10 CE1 1106 A 1 HETATM 11 C C11 CE1 . . . H 4 -11.425 42.227 -77.064 1 114.56 ? C11 CE1 1106 A 1 HETATM 12 C C12 CE1 . . . H 4 -10.009 41.976 -77.567 1 118.89 ? C12 CE1 1106 A 1 HETATM 13 O O13 CE1 . . . H 4 -9.869 42.399 -78.921 1 118.97 ? O13 CE1 1106 A 1 HETATM 14 C C14 CE1 . . . H 4 -10.544 41.509 -79.809 1 114.71 ? C14 CE1 1106 A 1 HETATM 15 C C15 CE1 . . . H 4 -9.588 40.482 -80.408 1 112.14 ? C15 CE1 1106 A 1 HETATM 16 O O16 CE1 . . . H 4 -9.042 39.695 -79.353 1 102.28 ? O16 CE1 1106 A 1 HETATM 17 C C17 CE1 . . . H 4 -9.668 38.422 -79.257 1 86.43 ? C17 CE1 1106 A 1 HETATM 18 C C18 CE1 . . . H 4 -9.764 38.083 -77.776 1 85.61 ? C18 CE1 1106 A 1 HETATM 19 O O19 CE1 . . . H 4 -10.232 36.748 -77.63 1 85.68 ? O19 CE1 1106 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #