data_7W48 # _model_server_result.job_id YulMrnC6htZg-rVNnDsViA _model_server_result.datetime_utc '2024-11-15 00:12:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1107}' # _entry.id 7W48 # _exptl.entry_id 7W48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 394.467 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2-hydroxyethyl)-N,2-dimethyl-8-[[(4R)-5-methyl-3,4-dihydro-2H-chromen-4-yl]amino]imidazo[1,2-a]pyridine-6-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7W48 _cell.length_a 104.75 _cell.length_b 104.75 _cell.length_c 368.79 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 131 B CYS 131 1_555 B SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 162 B CYS 162 1_555 B SG CYS 178 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 B SG CYS 201 B CYS 201 1_555 B SG CYS 262 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A C SER 385 A SER 384 1_555 A N BFD 386 A BFD 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C BFD 386 A BFD 385 1_555 A N LYS 387 A LYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B ND2 ASN 99 B ASN 99 1_555 J C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 B ND2 ASN 130 B ASN 130 1_555 K C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 B ND2 ASN 161 B ASN 161 1_555 L C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A O ASP 184 A ASP 183 1_555 G RB RB . A RB 1105 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc2 A OD2 ASP 186 A ASP 185 1_555 G RB RB . A RB 1105 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc3 A O SER 226 A SER 225 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc4 A O THR 388 A THR 387 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc5 A O SER 409 A SER 408 1_555 G RB RB . A RB 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc6 A OD1 ASP 727 A ASP 726 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc7 A OD2 ASP 727 A ASP 726 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc8 A O LYS 736 A LYS 735 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc9 A O ALA 738 A ALA 737 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc10 A OD1 ASP 757 A ASP 756 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc11 A OD2 ASP 757 A ASP 756 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.09 ? # _chem_comp.formula 'C22 H26 N4 O3' _chem_comp.formula_weight 394.467 _chem_comp.id 8BZ _chem_comp.mon_nstd_flag . _chem_comp.name N-(2-hydroxyethyl)-N,2-dimethyl-8-[[(4R)-5-methyl-3,4-dihydro-2H-chromen-4-yl]amino]imidazo[1,2-a]pyridine-6-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C22 8BZ sing 1 n n C22 C21 8BZ sing 2 n n C21 N4 8BZ sing 3 n n C20 N4 8BZ sing 4 n n N4 C19 8BZ sing 5 n n O2 C19 8BZ doub 6 n n C19 C13 8BZ sing 7 n n C1 C2 8BZ sing 8 n n C3 C2 8BZ doub 9 n y C3 C4 8BZ sing 10 n y C13 C12 8BZ sing 11 n y C13 C14 8BZ doub 12 n y C2 C7 8BZ sing 13 n y C12 C11 8BZ doub 14 n y C4 C5 8BZ doub 15 n y C14 N2 8BZ sing 16 n y C11 N1 8BZ sing 17 n n C11 C15 8BZ sing 18 n y N1 C8 8BZ sing 19 n n C7 C6 8BZ doub 20 n y C7 C8 8BZ sing 21 n n C5 C6 8BZ sing 22 n y N2 C15 8BZ sing 23 n y N2 C17 8BZ sing 24 n y C15 N3 8BZ doub 25 n y C6 O1 8BZ sing 26 n n C8 C9 8BZ sing 27 n n C17 C16 8BZ doub 28 n y N3 C16 8BZ sing 29 n y C9 C10 8BZ sing 30 n n C16 C18 8BZ sing 31 n n O1 C10 8BZ sing 32 n n C1 H1 8BZ sing 33 n n C1 H2 8BZ sing 34 n n C1 H3 8BZ sing 35 n n C10 H4 8BZ sing 36 n n C10 H5 8BZ sing 37 n n C12 H6 8BZ sing 38 n n C14 H7 8BZ sing 39 n n C17 H8 8BZ sing 40 n n C18 H9 8BZ sing 41 n n C18 H10 8BZ sing 42 n n C18 H11 8BZ sing 43 n n C20 H12 8BZ sing 44 n n C20 H13 8BZ sing 45 n n C20 H14 8BZ sing 46 n n C21 H15 8BZ sing 47 n n C21 H16 8BZ sing 48 n n C22 H17 8BZ sing 49 n n C22 H18 8BZ sing 50 n n C3 H19 8BZ sing 51 n n C4 H20 8BZ sing 52 n n C5 H21 8BZ sing 53 n n C8 H22 8BZ sing 54 n n C9 H23 8BZ sing 55 n n C9 H24 8BZ sing 56 n n N1 H25 8BZ sing 57 n n O3 H26 8BZ sing 58 n n # _atom_sites.entry_id 7W48 _atom_sites.fract_transf_matrix[1][1] 0.009547 _atom_sites.fract_transf_matrix[1][2] 0.005512 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011023 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1101 1102 MG MG . D 4 CE1 A 1 1102 1103 CE1 CE1 . E 5 RB A 1 1103 1104 RB RB . F 5 RB A 1 1104 1105 RB RB . G 5 RB A 1 1105 1106 RB RB . H 4 CE1 A 1 1106 305 CE1 CE1 . I 6 8BZ A 1 1107 1 8BZ XD1 . J 7 NAG B 1 301 301 NAG NAG . K 7 NAG B 1 302 302 NAG NAG . L 7 NAG B 1 303 303 NAG NAG . M 8 PCW B 1 304 304 PCW PCW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8BZ . . . I 6 -44.31 40.981 -70.362 1 92.79 ? C1 8BZ 1107 A 1 HETATM 2 C C10 8BZ . . . I 6 -46.078 39.292 -65.541 1 86.95 ? C10 8BZ 1107 A 1 HETATM 3 C C11 8BZ . . . I 6 -42.366 39.431 -68.471 1 98.44 ? C11 8BZ 1107 A 1 HETATM 4 C C12 8BZ . . . I 6 -41.613 38.838 -69.45 1 89.01 ? C12 8BZ 1107 A 1 HETATM 5 C C13 8BZ . . . I 6 -40.353 39.319 -69.717 1 84.38 ? C13 8BZ 1107 A 1 HETATM 6 C C14 8BZ . . . I 6 -39.85 40.398 -68.996 1 81.59 ? C14 8BZ 1107 A 1 HETATM 7 C C15 8BZ . . . I 6 -41.801 40.599 -67.718 1 96.66 ? C15 8BZ 1107 A 1 HETATM 8 C C16 8BZ . . . I 6 -41.301 42.269 -66.443 1 89.56 ? C16 8BZ 1107 A 1 HETATM 9 C C17 8BZ . . . I 6 -40.215 42.039 -67.252 1 83.81 ? C17 8BZ 1107 A 1 HETATM 10 C C18 8BZ . . . I 6 -41.157 43.408 -65.476 1 80.72 ? C18 8BZ 1107 A 1 HETATM 11 C C19 8BZ . . . I 6 -39.5 38.701 -70.781 1 87.03 ? C19 8BZ 1107 A 1 HETATM 12 C C2 8BZ . . . I 6 -45.548 40.931 -69.502 1 93.17 ? C2 8BZ 1107 A 1 HETATM 13 C C20 8BZ . . . I 6 -39.003 36.465 -71.624 1 86.27 ? C20 8BZ 1107 A 1 HETATM 14 C C21 8BZ . . . I 6 -41.073 37.519 -72.323 1 74.56 ? C21 8BZ 1107 A 1 HETATM 15 C C22 8BZ . . . I 6 -41.444 38.894 -72.865 1 67.79 ? C22 8BZ 1107 A 1 HETATM 16 C C3 8BZ . . . I 6 -46.648 41.568 -70.071 1 93.68 ? C3 8BZ 1107 A 1 HETATM 17 C C4 8BZ . . . I 6 -47.867 41.629 -69.424 1 93.21 ? C4 8BZ 1107 A 1 HETATM 18 C C5 8BZ . . . I 6 -47.986 41.035 -68.182 1 94.05 ? C5 8BZ 1107 A 1 HETATM 19 C C6 8BZ . . . I 6 -46.903 40.394 -67.59 1 91.12 ? C6 8BZ 1107 A 1 HETATM 20 C C7 8BZ . . . I 6 -45.662 40.32 -68.23 1 89.37 ? C7 8BZ 1107 A 1 HETATM 21 C C8 8BZ . . . I 6 -44.571 39.603 -67.481 1 90.04 ? C8 8BZ 1107 A 1 HETATM 22 C C9 8BZ . . . I 6 -45.142 38.58 -66.499 1 85.91 ? C9 8BZ 1107 A 1 HETATM 23 N N1 8BZ . . . I 6 -43.593 38.907 -68.289 1 98.71 ? N1 8BZ 1107 A 1 HETATM 24 N N2 8BZ . . . I 6 -40.554 41.009 -68.035 1 86.78 ? N2 8BZ 1107 A 1 HETATM 25 N N3 8BZ . . . I 6 -42.273 41.391 -66.717 1 94.86 ? N3 8BZ 1107 A 1 HETATM 26 N N4 8BZ . . . I 6 -39.857 37.64 -71.522 1 82.71 ? N4 8BZ 1107 A 1 HETATM 27 O O1 8BZ . . . I 6 -47.121 39.836 -66.349 1 86.78 ? O1 8BZ 1107 A 1 HETATM 28 O O2 8BZ . . . I 6 -38.426 39.238 -70.94 1 95.53 ? O2 8BZ 1107 A 1 HETATM 29 O O3 8BZ . . . I 6 -40.423 39.374 -73.74 1 74.28 ? O3 8BZ 1107 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #