data_7W48 # _model_server_result.job_id NIS96qp6tDQKgANGfnDsBQ _model_server_result.datetime_utc '2024-11-15 00:01:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 7W48 # _exptl.entry_id 7W48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7W48 _cell.length_a 104.75 _cell.length_b 104.75 _cell.length_c 368.79 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 K N N ? 7 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 131 B CYS 131 1_555 B SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 162 B CYS 162 1_555 B SG CYS 178 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 B SG CYS 201 B CYS 201 1_555 B SG CYS 262 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A C SER 385 A SER 384 1_555 A N BFD 386 A BFD 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C BFD 386 A BFD 385 1_555 A N LYS 387 A LYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B ND2 ASN 99 B ASN 99 1_555 J C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 B ND2 ASN 130 B ASN 130 1_555 K C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 B ND2 ASN 161 B ASN 161 1_555 L C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A O ASP 184 A ASP 183 1_555 G RB RB . A RB 1105 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc2 A OD2 ASP 186 A ASP 185 1_555 G RB RB . A RB 1105 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc3 A O SER 226 A SER 225 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc4 A O THR 388 A THR 387 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc5 A O SER 409 A SER 408 1_555 G RB RB . A RB 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc6 A OD1 ASP 727 A ASP 726 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc7 A OD2 ASP 727 A ASP 726 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc8 A O LYS 736 A LYS 735 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc9 A O ALA 738 A ALA 737 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc10 A OD1 ASP 757 A ASP 756 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc11 A OD2 ASP 757 A ASP 756 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.09 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 405 n n C1 O1 NAG sing 406 n n C1 O5 NAG sing 407 n n C1 H1 NAG sing 408 n n C2 C3 NAG sing 409 n n C2 N2 NAG sing 410 n n C2 H2 NAG sing 411 n n C3 C4 NAG sing 412 n n C3 O3 NAG sing 413 n n C3 H3 NAG sing 414 n n C4 C5 NAG sing 415 n n C4 O4 NAG sing 416 n n C4 H4 NAG sing 417 n n C5 C6 NAG sing 418 n n C5 O5 NAG sing 419 n n C5 H5 NAG sing 420 n n C6 O6 NAG sing 421 n n C6 H61 NAG sing 422 n n C6 H62 NAG sing 423 n n C7 C8 NAG sing 424 n n C7 N2 NAG sing 425 n n C7 O7 NAG doub 426 n n C8 H81 NAG sing 427 n n C8 H82 NAG sing 428 n n C8 H83 NAG sing 429 n n N2 HN2 NAG sing 430 n n O1 HO1 NAG sing 431 n n O3 HO3 NAG sing 432 n n O4 HO4 NAG sing 433 n n O6 HO6 NAG sing 434 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7W48 _atom_sites.fract_transf_matrix[1][1] 0.009547 _atom_sites.fract_transf_matrix[1][2] 0.005512 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011023 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1101 1102 MG MG . D 4 CE1 A 1 1102 1103 CE1 CE1 . E 5 RB A 1 1103 1104 RB RB . F 5 RB A 1 1104 1105 RB RB . G 5 RB A 1 1105 1106 RB RB . H 4 CE1 A 1 1106 305 CE1 CE1 . I 6 8BZ A 1 1107 1 8BZ XD1 . J 7 NAG B 1 301 301 NAG NAG . K 7 NAG B 1 302 302 NAG NAG . L 7 NAG B 1 303 303 NAG NAG . M 8 PCW B 1 304 304 PCW PCW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 7 -60.435 31.344 -109.822 1 83.98 ? C1 NAG 301 B 1 HETATM 2 C C2 NAG . . . J 7 -61.509 30.39 -109.282 1 89.64 ? C2 NAG 301 B 1 HETATM 3 C C3 NAG . . . J 7 -62.755 30.423 -110.166 1 92.67 ? C3 NAG 301 B 1 HETATM 4 C C4 NAG . . . J 7 -63.248 31.851 -110.35 1 86.13 ? C4 NAG 301 B 1 HETATM 5 C C5 NAG . . . J 7 -62.119 32.715 -110.897 1 79.68 ? C5 NAG 301 B 1 HETATM 6 C C6 NAG . . . J 7 -62.49 34.175 -111.002 1 81.34 ? C6 NAG 301 B 1 HETATM 7 C C7 NAG . . . J 7 -60.91 28.392 -107.995 1 86.51 ? C7 NAG 301 B 1 HETATM 8 C C8 NAG . . . J 7 -60.394 26.986 -108.047 1 83.86 ? C8 NAG 301 B 1 HETATM 9 N N2 NAG . . . J 7 -61.005 29.029 -109.168 1 86.44 ? N2 NAG 301 B 1 HETATM 10 O O3 NAG . . . J 7 -63.776 29.628 -109.573 1 92.59 ? O3 NAG 301 B 1 HETATM 11 O O4 NAG . . . J 7 -64.348 31.886 -111.252 1 85.46 ? O4 NAG 301 B 1 HETATM 12 O O5 NAG . . . J 7 -60.996 32.648 -110.01 1 74.41 ? O5 NAG 301 B 1 HETATM 13 O O6 NAG . . . J 7 -62.249 34.855 -109.777 1 77.53 ? O6 NAG 301 B 1 HETATM 14 O O7 NAG . . . J 7 -61.222 28.931 -106.937 1 89.53 ? O7 NAG 301 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #