data_7W48 # _model_server_result.job_id AYdDDptR3FpSCturt2cX0Q _model_server_result.datetime_utc '2024-11-15 00:08:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":304}' # _entry.id 7W48 # _exptl.entry_id 7W48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.121 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7W48 _cell.length_a 104.75 _cell.length_b 104.75 _cell.length_c 368.79 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 131 B CYS 131 1_555 B SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 162 B CYS 162 1_555 B SG CYS 178 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 B SG CYS 201 B CYS 201 1_555 B SG CYS 262 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A C SER 385 A SER 384 1_555 A N BFD 386 A BFD 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C BFD 386 A BFD 385 1_555 A N LYS 387 A LYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B ND2 ASN 99 B ASN 99 1_555 J C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 B ND2 ASN 130 B ASN 130 1_555 K C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 B ND2 ASN 161 B ASN 161 1_555 L C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A O ASP 184 A ASP 183 1_555 G RB RB . A RB 1105 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc2 A OD2 ASP 186 A ASP 185 1_555 G RB RB . A RB 1105 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc3 A O SER 226 A SER 225 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc4 A O THR 388 A THR 387 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc5 A O SER 409 A SER 408 1_555 G RB RB . A RB 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc6 A OD1 ASP 727 A ASP 726 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc7 A OD2 ASP 727 A ASP 726 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc8 A O LYS 736 A LYS 735 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc9 A O ALA 738 A ALA 737 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc10 A OD1 ASP 757 A ASP 756 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc11 A OD2 ASP 757 A ASP 756 1_555 F RB RB . A RB 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.09 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 435 n n C1 O3P PCW sing 436 n n C1 H11 PCW sing 437 n n C1 H12 PCW sing 438 n n C2 C3 PCW sing 439 n n C2 O2 PCW sing 440 n n C2 H2 PCW sing 441 n n C3 O3 PCW sing 442 n n C3 H31 PCW sing 443 n n C3 H32 PCW sing 444 n n C4 C5 PCW sing 445 n n C4 O4P PCW sing 446 n n C4 H41 PCW sing 447 n n C4 H42 PCW sing 448 n n C5 N PCW sing 449 n n C5 H51 PCW sing 450 n n C5 H52 PCW sing 451 n n C6 N PCW sing 452 n n C6 H61 PCW sing 453 n n C6 H62 PCW sing 454 n n C6 H63 PCW sing 455 n n C7 N PCW sing 456 n n C7 H71 PCW sing 457 n n C7 H72 PCW sing 458 n n C7 H73 PCW sing 459 n n C8 N PCW sing 460 n n C8 H81 PCW sing 461 n n C8 H82 PCW sing 462 n n C8 H83 PCW sing 463 n n C11 C12 PCW sing 464 n n C11 O3 PCW sing 465 n n C11 O11 PCW doub 466 n n C12 C13 PCW sing 467 n n C12 H121 PCW sing 468 n n C12 H122 PCW sing 469 n n C13 C14 PCW sing 470 n n C13 H131 PCW sing 471 n n C13 H132 PCW sing 472 n n C14 C15 PCW sing 473 n n C14 H141 PCW sing 474 n n C14 H142 PCW sing 475 n n C15 C16 PCW sing 476 n n C15 H151 PCW sing 477 n n C15 H152 PCW sing 478 n n C16 C17 PCW sing 479 n n C16 H161 PCW sing 480 n n C16 H162 PCW sing 481 n n C17 C18 PCW sing 482 n n C17 H171 PCW sing 483 n n C17 H172 PCW sing 484 n n C18 C19 PCW sing 485 n n C18 H181 PCW sing 486 n n C18 H182 PCW sing 487 n n C19 C20 PCW doub 488 z n C19 H19 PCW sing 489 n n C20 C21 PCW sing 490 n n C20 H20 PCW sing 491 n n C21 C22 PCW sing 492 n n C21 H211 PCW sing 493 n n C21 H212 PCW sing 494 n n C22 C23 PCW sing 495 n n C22 H221 PCW sing 496 n n C22 H222 PCW sing 497 n n C23 C24 PCW sing 498 n n C23 H231 PCW sing 499 n n C23 H232 PCW sing 500 n n C24 C25 PCW sing 501 n n C24 H241 PCW sing 502 n n C24 H242 PCW sing 503 n n C25 C26 PCW sing 504 n n C25 H251 PCW sing 505 n n C25 H252 PCW sing 506 n n C26 C27 PCW sing 507 n n C26 H261 PCW sing 508 n n C26 H262 PCW sing 509 n n C27 C28 PCW sing 510 n n C27 H271 PCW sing 511 n n C27 H272 PCW sing 512 n n C28 H281 PCW sing 513 n n C28 H282 PCW sing 514 n n C28 H283 PCW sing 515 n n C31 C32 PCW sing 516 n n C31 O2 PCW sing 517 n n C31 O31 PCW doub 518 n n C32 C33 PCW sing 519 n n C32 H321 PCW sing 520 n n C32 H322 PCW sing 521 n n C33 C34 PCW sing 522 n n C33 H331 PCW sing 523 n n C33 H332 PCW sing 524 n n C34 C35 PCW sing 525 n n C34 H341 PCW sing 526 n n C34 H342 PCW sing 527 n n C35 C36 PCW sing 528 n n C35 H351 PCW sing 529 n n C35 H352 PCW sing 530 n n C36 C37 PCW sing 531 n n C36 H361 PCW sing 532 n n C36 H362 PCW sing 533 n n C37 C38 PCW sing 534 n n C37 H371 PCW sing 535 n n C37 H372 PCW sing 536 n n C38 C39 PCW sing 537 n n C38 H381 PCW sing 538 n n C38 H382 PCW sing 539 n n C39 C40 PCW doub 540 z n C39 H39 PCW sing 541 n n C40 C41 PCW sing 542 n n C40 H40 PCW sing 543 n n C41 C42 PCW sing 544 n n C41 H411 PCW sing 545 n n C41 H412 PCW sing 546 n n C42 C43 PCW sing 547 n n C42 H421 PCW sing 548 n n C42 H422 PCW sing 549 n n C43 C44 PCW sing 550 n n C43 H431 PCW sing 551 n n C43 H432 PCW sing 552 n n C44 C45 PCW sing 553 n n C44 H441 PCW sing 554 n n C44 H442 PCW sing 555 n n C45 C46 PCW sing 556 n n C45 H451 PCW sing 557 n n C45 H452 PCW sing 558 n n C46 C47 PCW sing 559 n n C46 H461 PCW sing 560 n n C46 H462 PCW sing 561 n n C47 C48 PCW sing 562 n n C47 H471 PCW sing 563 n n C47 H472 PCW sing 564 n n C48 H481 PCW sing 565 n n C48 H482 PCW sing 566 n n C48 H483 PCW sing 567 n n O1P P PCW sing 568 n n O1P H1P PCW sing 569 n n O2P P PCW doub 570 n n O3P P PCW sing 571 n n O4P P PCW sing 572 n n # _atom_sites.entry_id 7W48 _atom_sites.fract_transf_matrix[1][1] 0.009547 _atom_sites.fract_transf_matrix[1][2] 0.005512 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011023 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1101 1102 MG MG . D 4 CE1 A 1 1102 1103 CE1 CE1 . E 5 RB A 1 1103 1104 RB RB . F 5 RB A 1 1104 1105 RB RB . G 5 RB A 1 1105 1106 RB RB . H 4 CE1 A 1 1106 305 CE1 CE1 . I 6 8BZ A 1 1107 1 8BZ XD1 . J 7 NAG B 1 301 301 NAG NAG . K 7 NAG B 1 302 302 NAG NAG . L 7 NAG B 1 303 303 NAG NAG . M 8 PCW B 1 304 304 PCW PCW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCW . . . M 8 -23.283 57.137 -80.975 1 148.8 ? C1 PCW 304 B 1 HETATM 2 C C2 PCW . . . M 8 -23.174 57.527 -79.51 1 139.32 ? C2 PCW 304 B 1 HETATM 3 C C3 PCW . . . M 8 -21.914 58.37 -79.361 1 133.02 ? C3 PCW 304 B 1 HETATM 4 C C4 PCW . . . M 8 -19.395 57.013 -84.251 1 142.03 ? C4 PCW 304 B 1 HETATM 5 C C5 PCW . . . M 8 -18.922 55.566 -84.225 1 132.93 ? C5 PCW 304 B 1 HETATM 6 C C6 PCW . . . M 8 -16.94 56.185 -83.008 1 114.43 ? C6 PCW 304 B 1 HETATM 7 C C7 PCW . . . M 8 -17.065 54.083 -84.17 1 116.8 ? C7 PCW 304 B 1 HETATM 8 C C8 PCW . . . M 8 -16.916 56.128 -85.408 1 125.97 ? C8 PCW 304 B 1 HETATM 9 C C11 PCW . . . M 8 -22.061 60.244 -77.788 1 116.92 ? C11 PCW 304 B 1 HETATM 10 C C12 PCW . . . M 8 -21.51 60.961 -76.578 1 119.83 ? C12 PCW 304 B 1 HETATM 11 C C13 PCW . . . M 8 -22.491 60.904 -75.41 1 133.81 ? C13 PCW 304 B 1 HETATM 12 C C14 PCW . . . M 8 -23.795 61.63 -75.721 1 135.97 ? C14 PCW 304 B 1 HETATM 13 C C15 PCW . . . M 8 -24.993 60.695 -75.584 1 128.49 ? C15 PCW 304 B 1 HETATM 14 C C16 PCW . . . M 8 -25.405 60.478 -74.13 1 114.54 ? C16 PCW 304 B 1 HETATM 15 C C17 PCW . . . M 8 -25.767 59.013 -73.904 1 115.39 ? C17 PCW 304 B 1 HETATM 16 C C18 PCW . . . M 8 -26.905 58.803 -72.905 1 119.2 ? C18 PCW 304 B 1 HETATM 17 C C19 PCW . . . M 8 -26.356 58.617 -71.508 1 117.46 ? C19 PCW 304 B 1 HETATM 18 C C20 PCW . . . M 8 -27.15 58.591 -70.436 1 100.58 ? C20 PCW 304 B 1 HETATM 19 C C21 PCW . . . M 8 -28.652 58.729 -70.542 1 94.06 ? C21 PCW 304 B 1 HETATM 20 C C22 PCW . . . M 8 -29.321 57.712 -69.62 1 91.21 ? C22 PCW 304 B 1 HETATM 21 C C23 PCW . . . M 8 -30.55 58.308 -68.94 1 96.97 ? C23 PCW 304 B 1 HETATM 22 C C24 PCW . . . M 8 -31.327 57.26 -68.147 1 88.32 ? C24 PCW 304 B 1 HETATM 23 C C25 PCW . . . M 8 -32.119 57.906 -67.014 1 85.27 ? C25 PCW 304 B 1 HETATM 24 C C26 PCW . . . M 8 -32.975 56.885 -66.271 1 76.75 ? C26 PCW 304 B 1 HETATM 25 C C27 PCW . . . M 8 -33.275 57.357 -64.852 1 66.85 ? C27 PCW 304 B 1 HETATM 26 C C28 PCW . . . M 8 -34.31 56.476 -64.186 1 65.01 ? C28 PCW 304 B 1 HETATM 27 C C31 PCW . . . M 8 -25.545 57.595 -79.042 1 121.68 ? C31 PCW 304 B 1 HETATM 28 C C32 PCW . . . M 8 -26.823 58.364 -78.804 1 114.01 ? C32 PCW 304 B 1 HETATM 29 C C33 PCW . . . M 8 -27.832 57.462 -78.106 1 107.47 ? C33 PCW 304 B 1 HETATM 30 C C34 PCW . . . M 8 -27.347 57.107 -76.706 1 109.23 ? C34 PCW 304 B 1 HETATM 31 C C35 PCW . . . M 8 -27.623 55.643 -76.399 1 101.18 ? C35 PCW 304 B 1 HETATM 32 C C36 PCW . . . M 8 -29.098 55.424 -76.094 1 93.67 ? C36 PCW 304 B 1 HETATM 33 C C37 PCW . . . M 8 -29.218 54.463 -74.922 1 84.34 ? C37 PCW 304 B 1 HETATM 34 C C38 PCW . . . M 8 -30.654 54.266 -74.453 1 77.28 ? C38 PCW 304 B 1 HETATM 35 C C39 PCW . . . M 8 -30.593 53.454 -73.182 1 74.49 ? C39 PCW 304 B 1 HETATM 36 C C40 PCW . . . M 8 -30.855 54.036 -72.014 1 77.27 ? C40 PCW 304 B 1 HETATM 37 C C41 PCW . . . M 8 -30.793 53.256 -70.721 1 71.66 ? C41 PCW 304 B 1 HETATM 38 C C42 PCW . . . M 8 -30.051 54.096 -69.685 1 71.34 ? C42 PCW 304 B 1 HETATM 39 C C43 PCW . . . M 8 -29.891 53.367 -68.356 1 73.01 ? C43 PCW 304 B 1 HETATM 40 C C44 PCW . . . M 8 -31.086 53.59 -67.436 1 68.42 ? C44 PCW 304 B 1 HETATM 41 C C45 PCW . . . M 8 -30.822 53.025 -66.043 1 72.28 ? C45 PCW 304 B 1 HETATM 42 C C46 PCW . . . M 8 -31.784 53.636 -65.031 1 66.14 ? C46 PCW 304 B 1 HETATM 43 C C47 PCW . . . M 8 -31.878 52.787 -63.77 1 55.87 ? C47 PCW 304 B 1 HETATM 44 C C48 PCW . . . M 8 -32.936 53.324 -62.834 1 59.88 ? C48 PCW 304 B 1 HETATM 45 N N PCW . . . M 8 -17.458 55.497 -84.199 1 122.03 ? N PCW 304 B 1 HETATM 46 O O2 PCW . . . M 8 -24.296 58.333 -79.167 1 137.01 ? O2 PCW 304 B 1 HETATM 47 O O3 PCW . . . M 8 -21.796 58.838 -78.023 1 118.41 ? O3 PCW 304 B 1 HETATM 48 O O11 PCW . . . M 8 -22.755 60.83 -78.601 1 117.42 ? O11 PCW 304 B 1 HETATM 49 O O31 PCW . . . M 8 -25.553 56.375 -79.135 1 114.22 ? O31 PCW 304 B 1 HETATM 50 O O1P PCW . . . M 8 -22.015 58.893 -83.079 1 157.16 ? O1P PCW 304 B 1 HETATM 51 O O2P PCW . . . M 8 -22.258 56.436 -83.952 1 147.31 ? O2P PCW 304 B 1 HETATM 52 O O3P PCW . . . M 8 -21.973 56.952 -81.49 1 160.88 ? O3P PCW 304 B 1 HETATM 53 O O4P PCW . . . M 8 -20.054 57.267 -83.017 1 152.64 ? O4P PCW 304 B 1 HETATM 54 P P PCW . . . M 8 -21.653 57.43 -82.988 1 166.7 ? P PCW 304 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 54 #