data_7W49 # _model_server_result.job_id 4hZxGd8iiavckMkzg86oFQ _model_server_result.datetime_utc '2024-11-15 02:51:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w49 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1104}' # _entry.id 7W49 # _exptl.entry_id 7W49 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.442 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Soraprazan _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7W49 _cell.length_a 105.533 _cell.length_b 105.533 _cell.length_c 370.889 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W49 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 131 B CYS 131 1_555 B SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 162 B CYS 162 1_555 B SG CYS 178 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 201 B CYS 201 1_555 B SG CYS 262 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A C SER 385 A SER 384 1_555 A N BFD 386 A BFD 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C BFD 386 A BFD 385 1_555 A N LYS 387 A LYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B ND2 ASN 99 B ASN 99 1_555 G C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 B ND2 ASN 130 B ASN 130 1_555 H C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 B ND2 ASN 161 B ASN 161 1_555 I C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? metalc ? metalc1 A O ALA 340 A ALA 339 1_555 D RB RB . A RB 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc2 A OE2 GLU 344 A GLU 343 1_555 D RB RB . A RB 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc3 A OD1 BFD 386 A BFD 385 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc4 A OD1 ASP 727 A ASP 726 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc5 A O LYS 736 A LYS 735 1_555 E RB RB . A RB 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc6 A O ALA 738 A ALA 737 1_555 E RB RB . A RB 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc7 A OD2 ASP 757 A ASP 756 1_555 E RB RB . A RB 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? # _chem_comp.formula 'C21 H25 N3 O3' _chem_comp.formula_weight 367.442 _chem_comp.id 8CE _chem_comp.mon_nstd_flag . _chem_comp.name Soraprazan _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 C18 8CE sing 1 n n O03 C19 8CE sing 2 n n C18 C17 8CE sing 3 n n C17 O02 8CE sing 4 n n O02 C08 8CE sing 5 n n C08 C04 8CE sing 6 n n C08 C11 8CE sing 7 n n O01 C11 8CE sing 8 n n C03 C04 8CE sing 9 n y C03 C02 8CE doub 10 n y C04 C05 8CE doub 11 n y C11 C22 8CE sing 12 n n C02 N02 8CE sing 13 n y C22 N03 8CE sing 14 n n C22 C09 8CE sing 15 n n C05 N03 8CE sing 16 n n C05 C06 8CE sing 17 n y N02 C06 8CE sing 18 n y N02 C07 8CE sing 19 n y C06 N01 8CE doub 20 n y C27 C09 8CE doub 21 n y C27 C26 8CE sing 22 n y C09 C23 8CE sing 23 n y C20 C07 8CE sing 24 n n C07 C10 8CE doub 25 n y C26 C25 8CE doub 26 n y C23 C24 8CE doub 27 n y N01 C10 8CE sing 28 n y C10 C21 8CE sing 29 n n C25 C24 8CE sing 30 n y C02 H1 8CE sing 31 n n C03 H2 8CE sing 32 n n C08 H3 8CE sing 33 n n C11 H4 8CE sing 34 n n C17 H5 8CE sing 35 n n C17 H6 8CE sing 36 n n C18 H7 8CE sing 37 n n C18 H8 8CE sing 38 n n C19 H9 8CE sing 39 n n C19 H10 8CE sing 40 n n C19 H11 8CE sing 41 n n C20 H12 8CE sing 42 n n C20 H13 8CE sing 43 n n C20 H14 8CE sing 44 n n C21 H15 8CE sing 45 n n C21 H16 8CE sing 46 n n C21 H17 8CE sing 47 n n C22 H18 8CE sing 48 n n C23 H19 8CE sing 49 n n C24 H20 8CE sing 50 n n C25 H21 8CE sing 51 n n C26 H22 8CE sing 52 n n C27 H23 8CE sing 53 n n N03 H24 8CE sing 54 n n O01 H25 8CE sing 55 n n # _atom_sites.entry_id 7W49 _atom_sites.fract_transf_matrix[1][1] 0.009476 _atom_sites.fract_transf_matrix[1][2] 0.005471 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1101 1102 MG MG . D 4 RB A 1 1102 1104 RB RB . E 4 RB A 1 1103 1105 RB RB . F 5 8CE A 1 1104 1201 8CE SRZ . G 6 NAG B 1 301 301 NAG NAG . H 6 NAG B 1 302 302 NAG NAG . I 6 NAG B 1 303 303 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 8CE . . . F 5 38.538 -39.342 -70.812 1 80.21 ? C02 8CE 1104 A 1 HETATM 2 C C03 8CE . . . F 5 39.597 -38.819 -71.543 1 83.74 ? C03 8CE 1104 A 1 HETATM 3 C C04 8CE . . . F 5 40.876 -38.822 -70.995 1 84.29 ? C04 8CE 1104 A 1 HETATM 4 C C05 8CE . . . F 5 41.084 -39.356 -69.728 1 75.95 ? C05 8CE 1104 A 1 HETATM 5 C C06 8CE . . . F 5 39.973 -39.872 -69.032 1 71.97 ? C06 8CE 1104 A 1 HETATM 6 C C07 8CE . . . F 5 37.878 -40.401 -68.72 1 88.51 ? C07 8CE 1104 A 1 HETATM 7 C C08 8CE . . . F 5 42.008 -38.268 -71.773 1 94.71 ? C08 8CE 1104 A 1 HETATM 8 C C09 8CE . . . F 5 44.631 -38.749 -68.946 1 76.15 ? C09 8CE 1104 A 1 HETATM 9 C C10 8CE . . . F 5 38.594 -40.774 -67.594 1 87.61 ? C10 8CE 1104 A 1 HETATM 10 C C11 8CE . . . F 5 43.126 -37.828 -70.828 1 91.39 ? C11 8CE 1104 A 1 HETATM 11 C C17 8CE . . . F 5 41.437 -37.498 -73.955 1 94.38 ? C17 8CE 1104 A 1 HETATM 12 C C18 8CE . . . F 5 41.239 -36.21 -74.752 1 100.68 ? C18 8CE 1104 A 1 HETATM 13 C C19 8CE . . . F 5 39.235 -35.833 -73.562 1 102.47 ? C19 8CE 1104 A 1 HETATM 14 C C20 8CE . . . F 5 36.398 -40.586 -68.93 1 85.73 ? C20 8CE 1104 A 1 HETATM 15 C C21 8CE . . . F 5 38.045 -41.429 -66.355 1 85.85 ? C21 8CE 1104 A 1 HETATM 16 C C22 8CE . . . F 5 43.551 -38.989 -69.942 1 87.56 ? C22 8CE 1104 A 1 HETATM 17 C C23 8CE . . . F 5 44.877 -39.723 -67.968 1 79.36 ? C23 8CE 1104 A 1 HETATM 18 C C24 8CE . . . F 5 45.869 -39.535 -67.015 1 71.18 ? C24 8CE 1104 A 1 HETATM 19 C C25 8CE . . . F 5 46.64 -38.377 -67.056 1 81.18 ? C25 8CE 1104 A 1 HETATM 20 C C26 8CE . . . F 5 46.412 -37.41 -68.038 1 91.49 ? C26 8CE 1104 A 1 HETATM 21 C C27 8CE . . . F 5 45.412 -37.598 -68.989 1 75.76 ? C27 8CE 1104 A 1 HETATM 22 N N01 8CE . . . F 5 39.879 -40.438 -67.807 1 88.45 ? N01 8CE 1104 A 1 HETATM 23 N N02 8CE . . . F 5 38.74 -39.853 -69.587 1 85.5 ? N02 8CE 1104 A 1 HETATM 24 N N03 8CE . . . F 5 42.346 -39.382 -69.193 1 86.86 ? N03 8CE 1104 A 1 HETATM 25 O O01 8CE . . . F 5 44.232 -37.419 -71.63 1 103.44 ? O01 8CE 1104 A 1 HETATM 26 O O02 8CE . . . F 5 41.581 -37.163 -72.571 1 85.53 ? O02 8CE 1104 A 1 HETATM 27 O O03 8CE . . . F 5 39.86 -35.846 -74.843 1 93.12 ? O03 8CE 1104 A 1 HETATM 28 H H1 8CE . . . F 5 37.541 -39.337 -71.234 1 96.26 ? H1 8CE 1104 A 1 HETATM 29 H H2 8CE . . . F 5 39.429 -38.412 -72.533 1 100.48 ? H2 8CE 1104 A 1 HETATM 30 H H3 8CE . . . F 5 42.401 -39.053 -72.434 1 113.65 ? H3 8CE 1104 A 1 HETATM 31 H H4 8CE . . . F 5 42.783 -37.003 -70.188 1 109.66 ? H4 8CE 1104 A 1 HETATM 32 H H5 8CE . . . F 5 42.327 -38.024 -74.307 1 113.26 ? H5 8CE 1104 A 1 HETATM 33 H H6 8CE . . . F 5 40.58 -38.16 -74.093 1 113.26 ? H6 8CE 1104 A 1 HETATM 34 H H7 8CE . . . F 5 41.794 -35.401 -74.273 1 120.81 ? H7 8CE 1104 A 1 HETATM 35 H H8 8CE . . . F 5 41.642 -36.344 -75.758 1 120.81 ? H8 8CE 1104 A 1 HETATM 36 H H9 8CE . . . F 5 38.902 -36.809 -73.322 1 122.96 ? H9 8CE 1104 A 1 HETATM 37 H H10 8CE . . . F 5 38.408 -35.171 -73.579 1 122.96 ? H10 8CE 1104 A 1 HETATM 38 H H11 8CE . . . F 5 39.931 -35.508 -72.833 1 122.96 ? H11 8CE 1104 A 1 HETATM 39 H H12 8CE . . . F 5 35.941 -39.641 -69.069 1 102.88 ? H12 8CE 1104 A 1 HETATM 40 H H13 8CE . . . F 5 35.977 -41.061 -68.082 1 102.88 ? H13 8CE 1104 A 1 HETATM 41 H H14 8CE . . . F 5 36.236 -41.186 -69.788 1 102.88 ? H14 8CE 1104 A 1 HETATM 42 H H15 8CE . . . F 5 37.589 -42.349 -66.615 1 103.02 ? H15 8CE 1104 A 1 HETATM 43 H H16 8CE . . . F 5 37.326 -40.793 -65.908 1 103.02 ? H16 8CE 1104 A 1 HETATM 44 H H17 8CE . . . F 5 38.834 -41.607 -65.671 1 103.02 ? H17 8CE 1104 A 1 HETATM 45 H H18 8CE . . . F 5 43.972 -39.738 -70.628 1 105.08 ? H18 8CE 1104 A 1 HETATM 46 H H19 8CE . . . F 5 44.286 -40.631 -67.956 1 95.24 ? H19 8CE 1104 A 1 HETATM 47 H H20 8CE . . . F 5 46.041 -40.282 -66.249 1 85.42 ? H20 8CE 1104 A 1 HETATM 48 H H21 8CE . . . F 5 47.421 -38.224 -66.321 1 97.41 ? H21 8CE 1104 A 1 HETATM 49 H H22 8CE . . . F 5 47.015 -36.511 -68.059 1 109.78 ? H22 8CE 1104 A 1 HETATM 50 H H23 8CE . . . F 5 45.244 -36.852 -69.756 1 90.91 ? H23 8CE 1104 A 1 HETATM 51 H H24 8CE . . . F 5 42.469 -39.685 -68.237 1 104.23 ? H24 8CE 1104 A 1 HETATM 52 H H25 8CE . . . F 5 44.481 -38.139 -72.227 1 124.13 ? H25 8CE 1104 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 416 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 52 #