data_7W4A # _model_server_result.job_id -WsxwLt3ZxMOP74Gl0M2PQ _model_server_result.datetime_utc '2024-11-04 22:49:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w4a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 7W4A # _exptl.entry_id 7W4A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 362.443 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-fluorophenyl)-4,5-dimethyl-6-[(1R)-1-methyl-3,4-dihydro-1H-isoquinolin-2-yl]pyrimidin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W4A _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W4A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 131 B CYS 131 1_555 B SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 162 B CYS 162 1_555 B SG CYS 178 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 201 B CYS 201 1_555 B SG CYS 262 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A C SER 385 A SER 384 1_555 A N BFD 386 A BFD 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C BFD 386 A BFD 385 1_555 A N LYS 387 A LYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B ND2 ASN 99 B ASN 99 1_555 F C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 B ND2 ASN 130 B ASN 130 1_555 G C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 B ND2 ASN 161 B ASN 161 1_555 H C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A OD2 BFD 386 A BFD 385 1_555 E MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 A O THR 388 A THR 387 1_555 E MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc3 A OD2 ASP 727 A ASP 726 1_555 E MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc4 A OD1 ASP 757 A ASP 756 1_555 D NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc5 A OD2 ASP 757 A ASP 756 1_555 D NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? # _chem_comp.formula 'C22 H23 F N4' _chem_comp.formula_weight 362.443 _chem_comp.id 8CK _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-fluorophenyl)-4,5-dimethyl-6-[(1R)-1-methyl-3,4-dihydro-1H-isoquinolin-2-yl]pyrimidin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms R-revaprazan # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C44 C13 8CK sing 1 n n C16 C17 8CK doub 2 n y C16 C14 8CK sing 3 n y N02 C13 8CK doub 4 n y N02 C15 8CK sing 5 n y N04 C14 8CK sing 6 n n N04 C15 8CK sing 7 n n C17 C18 8CK sing 8 n y C13 C12 8CK sing 9 n y C14 C20 8CK doub 10 n y C15 N03 8CK doub 11 n y C18 F01 8CK sing 12 n n C18 C19 8CK doub 13 n y C20 C19 8CK sing 14 n y C12 C45 8CK sing 15 n n C12 C11 8CK doub 16 n y N03 C11 8CK sing 17 n y C11 N01 8CK sing 18 n n N01 C03 8CK sing 19 n n N01 C05 8CK sing 20 n n C03 C02 8CK sing 21 n n C05 C21 8CK sing 22 n n C05 C06 8CK sing 23 n n C02 C01 8CK sing 24 n n C06 C01 8CK doub 25 n y C06 C08 8CK sing 26 n y C01 C07 8CK sing 27 n y C08 C09 8CK doub 28 n y C07 C10 8CK doub 29 n y C09 C10 8CK sing 30 n y C02 H1 8CK sing 31 n n C02 H2 8CK sing 32 n n C03 H3 8CK sing 33 n n C03 H4 8CK sing 34 n n C05 H5 8CK sing 35 n n C07 H6 8CK sing 36 n n C08 H7 8CK sing 37 n n C09 H8 8CK sing 38 n n C10 H9 8CK sing 39 n n C16 H10 8CK sing 40 n n C17 H11 8CK sing 41 n n C19 H12 8CK sing 42 n n C20 H13 8CK sing 43 n n C21 H14 8CK sing 44 n n C21 H15 8CK sing 45 n n C21 H16 8CK sing 46 n n C44 H17 8CK sing 47 n n C44 H18 8CK sing 48 n n C44 H19 8CK sing 49 n n C45 H20 8CK sing 50 n n C45 H21 8CK sing 51 n n C45 H22 8CK sing 52 n n N04 H23 8CK sing 53 n n # _atom_sites.entry_id 7W4A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 8CK A 1 1101 1101 8CK RvS . D 4 NA A 1 1102 2 NA NA . E 5 MG A 1 1103 3 MG MG . F 6 NAG B 1 301 301 NAG NAG . G 6 NAG B 1 302 302 NAG NAG . H 6 NAG B 1 303 303 NAG NAG . I 7 PCW B 1 304 304 PCW PCW . J 8 HOH A 1 1201 2 HOH HOH . J 8 HOH A 2 1202 4 HOH HOH . J 8 HOH A 3 1203 7 HOH HOH . J 8 HOH A 4 1204 8 HOH HOH . J 8 HOH A 5 1205 3 HOH HOH . J 8 HOH A 6 1206 10 HOH HOH . J 8 HOH A 7 1207 1 HOH HOH . J 8 HOH A 8 1208 9 HOH HOH . J 8 HOH A 9 1209 6 HOH HOH . J 8 HOH A 10 1210 11 HOH HOH . J 8 HOH A 11 1211 5 HOH HOH . J 8 HOH A 12 1212 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 8CK . . . C 3 99.621 111.229 89.217 1 24.39 ? C01 8CK 1101 A 1 HETATM 2 C C02 8CK . . . C 3 100.676 111.338 88.147 1 24.39 ? C02 8CK 1101 A 1 HETATM 3 C C03 8CK . . . C 3 100.235 112.352 87.099 1 24.39 ? C03 8CK 1101 A 1 HETATM 4 C C05 8CK . . . C 3 97.868 111.859 87.546 1 24.39 ? C05 8CK 1101 A 1 HETATM 5 C C06 8CK . . . C 3 98.293 111.47 88.912 1 24.39 ? C06 8CK 1101 A 1 HETATM 6 C C07 8CK . . . C 3 99.987 110.872 90.51 1 24.39 ? C07 8CK 1101 A 1 HETATM 7 C C08 8CK . . . C 3 97.328 111.37 89.905 1 24.39 ? C08 8CK 1101 A 1 HETATM 8 C C09 8CK . . . C 3 97.689 111.016 91.199 1 24.39 ? C09 8CK 1101 A 1 HETATM 9 C C10 8CK . . . C 3 99.021 110.766 91.504 1 24.39 ? C10 8CK 1101 A 1 HETATM 10 C C11 8CK . . . C 3 98.724 111.581 85.217 1 24.39 ? C11 8CK 1101 A 1 HETATM 11 C C12 8CK . . . C 3 99.332 110.556 84.494 1 24.39 ? C12 8CK 1101 A 1 HETATM 12 C C13 8CK . . . C 3 98.987 110.394 83.16 1 24.39 ? C13 8CK 1101 A 1 HETATM 13 C C14 8CK . . . C 3 96.06 114.12 83.241 1 24.39 ? C14 8CK 1101 A 1 HETATM 14 C C15 8CK . . . C 3 97.498 112.198 83.288 1 24.39 ? C15 8CK 1101 A 1 HETATM 15 C C16 8CK . . . C 3 96.112 115.322 82.543 1 24.39 ? C16 8CK 1101 A 1 HETATM 16 C C17 8CK . . . C 3 95.566 116.477 83.095 1 24.39 ? C17 8CK 1101 A 1 HETATM 17 C C18 8CK . . . C 3 94.958 116.433 84.344 1 24.39 ? C18 8CK 1101 A 1 HETATM 18 C C19 8CK . . . C 3 94.898 115.237 85.042 1 24.39 ? C19 8CK 1101 A 1 HETATM 19 C C20 8CK . . . C 3 95.442 114.087 84.487 1 24.39 ? C20 8CK 1101 A 1 HETATM 20 C C21 8CK . . . C 3 97.268 113.259 87.637 1 24.39 ? C21 8CK 1101 A 1 HETATM 21 C C44 8CK . . . C 3 99.62 109.301 82.341 1 24.39 ? C44 8CK 1101 A 1 HETATM 22 C C45 8CK . . . C 3 100.347 109.61 85.085 1 24.39 ? C45 8CK 1101 A 1 HETATM 23 F F01 8CK . . . C 3 94.428 117.541 84.885 1 24.39 ? F01 8CK 1101 A 1 HETATM 24 N N01 8CK . . . C 3 98.957 111.889 86.573 1 24.39 ? N01 8CK 1101 A 1 HETATM 25 N N02 8CK . . . C 3 98.081 111.21 82.582 1 24.39 ? N02 8CK 1101 A 1 HETATM 26 N N03 8CK . . . C 3 97.829 112.367 84.584 1 24.39 ? N03 8CK 1101 A 1 HETATM 27 N N04 8CK . . . C 3 96.591 113.004 82.681 1 24.39 ? N04 8CK 1101 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #