data_7W4A # _model_server_result.job_id vXMju6TKa79TA_mj18rGFg _model_server_result.datetime_utc '2024-11-04 22:47:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7w4a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":304}' # _entry.id 7W4A # _exptl.entry_id 7W4A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.121 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7W4A _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7W4A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 131 B CYS 131 1_555 B SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 162 B CYS 162 1_555 B SG CYS 178 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 201 B CYS 201 1_555 B SG CYS 262 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A C SER 385 A SER 384 1_555 A N BFD 386 A BFD 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C BFD 386 A BFD 385 1_555 A N LYS 387 A LYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B ND2 ASN 99 B ASN 99 1_555 F C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 B ND2 ASN 130 B ASN 130 1_555 G C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 B ND2 ASN 161 B ASN 161 1_555 H C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A OD2 BFD 386 A BFD 385 1_555 E MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 A O THR 388 A THR 387 1_555 E MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc3 A OD2 ASP 727 A ASP 726 1_555 E MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc4 A OD1 ASP 757 A ASP 756 1_555 D NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc5 A OD2 ASP 757 A ASP 756 1_555 D NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 338 n n C1 O3P PCW sing 339 n n C1 H11 PCW sing 340 n n C1 H12 PCW sing 341 n n C2 C3 PCW sing 342 n n C2 O2 PCW sing 343 n n C2 H2 PCW sing 344 n n C3 O3 PCW sing 345 n n C3 H31 PCW sing 346 n n C3 H32 PCW sing 347 n n C4 C5 PCW sing 348 n n C4 O4P PCW sing 349 n n C4 H41 PCW sing 350 n n C4 H42 PCW sing 351 n n C5 N PCW sing 352 n n C5 H51 PCW sing 353 n n C5 H52 PCW sing 354 n n C6 N PCW sing 355 n n C6 H61 PCW sing 356 n n C6 H62 PCW sing 357 n n C6 H63 PCW sing 358 n n C7 N PCW sing 359 n n C7 H71 PCW sing 360 n n C7 H72 PCW sing 361 n n C7 H73 PCW sing 362 n n C8 N PCW sing 363 n n C8 H81 PCW sing 364 n n C8 H82 PCW sing 365 n n C8 H83 PCW sing 366 n n C11 C12 PCW sing 367 n n C11 O3 PCW sing 368 n n C11 O11 PCW doub 369 n n C12 C13 PCW sing 370 n n C12 H121 PCW sing 371 n n C12 H122 PCW sing 372 n n C13 C14 PCW sing 373 n n C13 H131 PCW sing 374 n n C13 H132 PCW sing 375 n n C14 C15 PCW sing 376 n n C14 H141 PCW sing 377 n n C14 H142 PCW sing 378 n n C15 C16 PCW sing 379 n n C15 H151 PCW sing 380 n n C15 H152 PCW sing 381 n n C16 C17 PCW sing 382 n n C16 H161 PCW sing 383 n n C16 H162 PCW sing 384 n n C17 C18 PCW sing 385 n n C17 H171 PCW sing 386 n n C17 H172 PCW sing 387 n n C18 C19 PCW sing 388 n n C18 H181 PCW sing 389 n n C18 H182 PCW sing 390 n n C19 C20 PCW doub 391 z n C19 H19 PCW sing 392 n n C20 C21 PCW sing 393 n n C20 H20 PCW sing 394 n n C21 C22 PCW sing 395 n n C21 H211 PCW sing 396 n n C21 H212 PCW sing 397 n n C22 C23 PCW sing 398 n n C22 H221 PCW sing 399 n n C22 H222 PCW sing 400 n n C23 C24 PCW sing 401 n n C23 H231 PCW sing 402 n n C23 H232 PCW sing 403 n n C24 C25 PCW sing 404 n n C24 H241 PCW sing 405 n n C24 H242 PCW sing 406 n n C25 C26 PCW sing 407 n n C25 H251 PCW sing 408 n n C25 H252 PCW sing 409 n n C26 C27 PCW sing 410 n n C26 H261 PCW sing 411 n n C26 H262 PCW sing 412 n n C27 C28 PCW sing 413 n n C27 H271 PCW sing 414 n n C27 H272 PCW sing 415 n n C28 H281 PCW sing 416 n n C28 H282 PCW sing 417 n n C28 H283 PCW sing 418 n n C31 C32 PCW sing 419 n n C31 O2 PCW sing 420 n n C31 O31 PCW doub 421 n n C32 C33 PCW sing 422 n n C32 H321 PCW sing 423 n n C32 H322 PCW sing 424 n n C33 C34 PCW sing 425 n n C33 H331 PCW sing 426 n n C33 H332 PCW sing 427 n n C34 C35 PCW sing 428 n n C34 H341 PCW sing 429 n n C34 H342 PCW sing 430 n n C35 C36 PCW sing 431 n n C35 H351 PCW sing 432 n n C35 H352 PCW sing 433 n n C36 C37 PCW sing 434 n n C36 H361 PCW sing 435 n n C36 H362 PCW sing 436 n n C37 C38 PCW sing 437 n n C37 H371 PCW sing 438 n n C37 H372 PCW sing 439 n n C38 C39 PCW sing 440 n n C38 H381 PCW sing 441 n n C38 H382 PCW sing 442 n n C39 C40 PCW doub 443 z n C39 H39 PCW sing 444 n n C40 C41 PCW sing 445 n n C40 H40 PCW sing 446 n n C41 C42 PCW sing 447 n n C41 H411 PCW sing 448 n n C41 H412 PCW sing 449 n n C42 C43 PCW sing 450 n n C42 H421 PCW sing 451 n n C42 H422 PCW sing 452 n n C43 C44 PCW sing 453 n n C43 H431 PCW sing 454 n n C43 H432 PCW sing 455 n n C44 C45 PCW sing 456 n n C44 H441 PCW sing 457 n n C44 H442 PCW sing 458 n n C45 C46 PCW sing 459 n n C45 H451 PCW sing 460 n n C45 H452 PCW sing 461 n n C46 C47 PCW sing 462 n n C46 H461 PCW sing 463 n n C46 H462 PCW sing 464 n n C47 C48 PCW sing 465 n n C47 H471 PCW sing 466 n n C47 H472 PCW sing 467 n n C48 H481 PCW sing 468 n n C48 H482 PCW sing 469 n n C48 H483 PCW sing 470 n n O1P P PCW sing 471 n n O1P H1P PCW sing 472 n n O2P P PCW doub 473 n n O3P P PCW sing 474 n n O4P P PCW sing 475 n n # _atom_sites.entry_id 7W4A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 8CK A 1 1101 1101 8CK RvS . D 4 NA A 1 1102 2 NA NA . E 5 MG A 1 1103 3 MG MG . F 6 NAG B 1 301 301 NAG NAG . G 6 NAG B 1 302 302 NAG NAG . H 6 NAG B 1 303 303 NAG NAG . I 7 PCW B 1 304 304 PCW PCW . J 8 HOH A 1 1201 2 HOH HOH . J 8 HOH A 2 1202 4 HOH HOH . J 8 HOH A 3 1203 7 HOH HOH . J 8 HOH A 4 1204 8 HOH HOH . J 8 HOH A 5 1205 3 HOH HOH . J 8 HOH A 6 1206 10 HOH HOH . J 8 HOH A 7 1207 1 HOH HOH . J 8 HOH A 8 1208 9 HOH HOH . J 8 HOH A 9 1209 6 HOH HOH . J 8 HOH A 10 1210 11 HOH HOH . J 8 HOH A 11 1211 5 HOH HOH . J 8 HOH A 12 1212 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCW . . . I 7 125.267 105.792 81.248 1 25.01 ? C1 PCW 304 B 1 HETATM 2 C C2 PCW . . . I 7 124.281 106.081 82.367 1 25.01 ? C2 PCW 304 B 1 HETATM 3 C C3 PCW . . . I 7 124.991 105.994 83.709 1 25.01 ? C3 PCW 304 B 1 HETATM 4 C C4 PCW . . . I 7 128.888 102.445 80.345 1 25.01 ? C4 PCW 304 B 1 HETATM 5 C C5 PCW . . . I 7 128.906 101.141 79.55 1 25.01 ? C5 PCW 304 B 1 HETATM 6 C C6 PCW . . . I 7 129.302 102.531 77.61 1 25.01 ? C6 PCW 304 B 1 HETATM 7 C C7 PCW . . . I 7 129.033 100.172 77.365 1 25.01 ? C7 PCW 304 B 1 HETATM 8 C C8 PCW . . . I 7 127.145 101.51 77.931 1 25.01 ? C8 PCW 304 B 1 HETATM 9 C C11 PCW . . . I 7 124.784 107.239 85.874 1 25.01 ? C11 PCW 304 B 1 HETATM 10 C C12 PCW . . . I 7 124.26 108.51 86.49 1 25.01 ? C12 PCW 304 B 1 HETATM 11 C C13 PCW . . . I 7 122.739 108.426 86.536 1 25.01 ? C13 PCW 304 B 1 HETATM 12 C C14 PCW . . . I 7 122.132 109.818 86.639 1 25.01 ? C14 PCW 304 B 1 HETATM 13 C C15 PCW . . . I 7 122.619 110.701 85.496 1 25.01 ? C15 PCW 304 B 1 HETATM 14 C C16 PCW . . . I 7 122.012 112.095 85.592 1 25.01 ? C16 PCW 304 B 1 HETATM 15 C C17 PCW . . . I 7 122.373 112.753 86.919 1 25.01 ? C17 PCW 304 B 1 HETATM 16 C C18 PCW . . . I 7 121.149 113.42 87.533 1 25.01 ? C18 PCW 304 B 1 HETATM 17 C C19 PCW . . . I 7 120.035 112.406 87.623 1 25.01 ? C19 PCW 304 B 1 HETATM 18 C C20 PCW . . . I 7 119.474 112.115 88.791 1 25.01 ? C20 PCW 304 B 1 HETATM 19 C C21 PCW . . . I 7 119.941 112.8 90.05 1 25.01 ? C21 PCW 304 B 1 HETATM 20 C C22 PCW . . . I 7 118.745 113.436 90.745 1 25.01 ? C22 PCW 304 B 1 HETATM 21 C C23 PCW . . . I 7 118.009 114.369 89.792 1 25.01 ? C23 PCW 304 B 1 HETATM 22 C C24 PCW . . . I 7 116.837 115.056 90.479 1 25.01 ? C24 PCW 304 B 1 HETATM 23 C C25 PCW . . . I 7 117.312 116.015 91.562 1 25.01 ? C25 PCW 304 B 1 HETATM 24 C C26 PCW . . . I 7 116.129 116.757 92.171 1 25.01 ? C26 PCW 304 B 1 HETATM 25 C C27 PCW . . . I 7 116.586 117.799 93.185 1 25.01 ? C27 PCW 304 B 1 HETATM 26 C C28 PCW . . . I 7 115.393 118.454 93.846 1 25.01 ? C28 PCW 304 B 1 HETATM 27 C C31 PCW . . . I 7 122.278 107.36 82.336 1 25.01 ? C31 PCW 304 B 1 HETATM 28 C C32 PCW . . . I 7 121.494 108.599 82.694 1 25.01 ? C32 PCW 304 B 1 HETATM 29 C C33 PCW . . . I 7 120.015 108.245 82.8 1 25.01 ? C33 PCW 304 B 1 HETATM 30 C C34 PCW . . . I 7 119.197 109.426 83.31 1 25.01 ? C34 PCW 304 B 1 HETATM 31 C C35 PCW . . . I 7 117.708 109.101 83.325 1 25.01 ? C35 PCW 304 B 1 HETATM 32 C C36 PCW . . . I 7 116.866 110.362 83.477 1 25.01 ? C36 PCW 304 B 1 HETATM 33 C C37 PCW . . . I 7 116.736 110.759 84.941 1 25.01 ? C37 PCW 304 B 1 HETATM 34 C C38 PCW . . . I 7 115.9 109.739 85.698 1 25.01 ? C38 PCW 304 B 1 HETATM 35 C C39 PCW . . . I 7 116.064 109.939 87.184 1 25.01 ? C39 PCW 304 B 1 HETATM 36 C C40 PCW . . . I 7 114.995 109.975 87.971 1 25.01 ? C40 PCW 304 B 1 HETATM 37 C C41 PCW . . . I 7 115.158 110.171 89.458 1 25.01 ? C41 PCW 304 B 1 HETATM 38 C C42 PCW . . . I 7 114.207 111.254 89.948 1 25.01 ? C42 PCW 304 B 1 HETATM 39 C C43 PCW . . . I 7 114.383 111.472 91.445 1 25.01 ? C43 PCW 304 B 1 HETATM 40 C C44 PCW . . . I 7 113.464 112.569 91.969 1 25.01 ? C44 PCW 304 B 1 HETATM 41 C C45 PCW . . . I 7 113.756 112.847 93.438 1 25.01 ? C45 PCW 304 B 1 HETATM 42 C C46 PCW . . . I 7 112.534 113.406 94.156 1 25.01 ? C46 PCW 304 B 1 HETATM 43 C C47 PCW . . . I 7 112.188 114.809 93.672 1 25.01 ? C47 PCW 304 B 1 HETATM 44 C C48 PCW . . . I 7 111.012 115.372 94.438 1 25.01 ? C48 PCW 304 B 1 HETATM 45 N N PCW . . . I 7 128.593 101.351 78.124 1 25.01 ? N PCW 304 B 1 HETATM 46 O O2 PCW . . . I 7 123.729 107.392 82.242 1 25.01 ? O2 PCW 304 B 1 HETATM 47 O O3 PCW . . . I 7 124.255 106.832 84.59 1 25.01 ? O3 PCW 304 B 1 HETATM 48 O O11 PCW . . . I 7 125.622 106.551 86.432 1 25.01 ? O11 PCW 304 B 1 HETATM 49 O O31 PCW . . . I 7 121.7 106.31 82.124 1 25.01 ? O31 PCW 304 B 1 HETATM 50 O O1P PCW . . . I 7 127.62 103.93 82.984 1 25.01 ? O1P PCW 304 B 1 HETATM 51 O O2P PCW . . . I 7 128.033 105.295 80.784 1 25.01 ? O2P PCW 304 B 1 HETATM 52 O O3P PCW . . . I 7 125.742 104.455 81.384 1 25.01 ? O3P PCW 304 B 1 HETATM 53 O O4P PCW . . . I 7 127.562 102.816 80.721 1 25.01 ? O4P PCW 304 B 1 HETATM 54 P P PCW . . . I 7 127.322 104.189 81.528 1 25.01 ? P PCW 304 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 54 #